Clone Sequence Records
BO09865.3prime Sequence
969 bp (792 high quality bases) assembled on 2006-04-19
> BO09865.3prime
ATGGTCTAGAAAGCTTGCCACCAGATCGCAGATGCCGCGATTTAGAAAAA
CCTCCAGGCACGTGTTGTCCACTCGATCGAAGAGCAGTGAGCCAAATCTC
CGGGCCGTATAGTCAACGATCAGCACCATCTTGCAATTGATGCACTTGTC
GCGGTAGTGGAACAGTAGGCCCACCGTGGGATGTACCACATGATCGGCGT
ATCCGGGTGCGGCGCGGTACACCTGATGGTTGCCCATCTCCACAATGGCC
CTGGCATTCACCACCACCTTGCTTCGTATGTAGGCGGGCAGCACCTCCAG
CGTTCGCCGCACCTTCGACTGGGTGTAGAGCAGTCTGTTGAGAACGTGGC
TGGGGGCGTTGAAGGTGTCGTTACTGTCTCGCCGGTGGAAGAATACGTTG
CGGAAGACGAAGCCCGCGGTGCGGCCCTCGTCGCACTGGCGCAGGTAGTC
CGCCAAGGTGTTGTGCTTCAGCGGCATCACCACCTCGTCCAGGTCCACCA
CTGCCGCGTATCGAAAGTTGTCCACCACATTGGCACGGTACACACAGTCG
TTGAACTGCGCCACGATTCCGGCGTAGTGGACATCCTGCATATGCGCTTG
GACATTCCATTCGAAGACATCGGCCAGGCCAATCCGTTGGTAGTGCTCCA
GCACGCGAAGCACCTCCTCGCTGGCCTCTACGTAGTAGAAGTAGAAGTGG
GTTGCACCCTGCAGGCGGTACATCTCCACGAACTCCACCAGCCGCAGCAC
ATTCGAGTAGTTCTCGTGGAGGGGACCCACACACACGGAGATCGTGGGTC
GAGATCGGCCAAACATGTTGGTCATGTTGCGGGGGATACTGATCTGAATA
AAGGTAGGACTAAGGTGACTGAGTCGATTGGACGCGTAGGCCAAGGGCAC
TGCCTGGGGGAAGGCGCAAGGGAGAGCGGCGGGAGGCGTGCAGCGGACAC
ATGATGCTCCACGCGGCAA
BO09865.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12910-PA | 1401 | CG12910-RA | 583..1398 | 834..19 | 4080 | 100 | Minus |
CG12910-PA | 1401 | CG12910-RA | 508..579 | 909..838 | 335 | 98.6 | Minus |
CG12910-PA | 1401 | CG12910-RA | 454..511 | 964..907 | 290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12910-RC | 2487 | CG12910-RC | 1298..2247 | 969..19 | 4655 | 99.5 | Minus |
CG12910-RB | 1705 | CG12910-RB | 516..1465 | 969..19 | 4655 | 99.5 | Minus |
CG12910-RA | 1702 | CG12910-RA | 513..1462 | 969..19 | 4655 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10268150..10268965 | 834..19 | 4080 | 100 | Minus |
2R | 25286936 | 2R | 10267913..10268042 | 969..839 | 575 | 97.7 | Minus |
Blast to na_te.dros performed 2015-02-12 03:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 582..665 | 670..758 | 109 | 61.8 | Plus |
BO09865.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:21 Download gff for
BO09865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-PA | 451..1401 | 18..967 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:32 Download gff for
BO09865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-PA | 451..1401 | 18..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:14:43 Download gff for
BO09865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-RA | 515..1466 | 13..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:38 Download gff for
BO09865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-RA | 515..1466 | 13..967 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:38 Download gff for
BO09865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10267915..10268042 | 839..967 | 97 | -> | Minus |
2R | 10268146..10268969 | 13..838 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:14:43 Download gff for
BO09865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6155420..6155547 | 839..967 | 97 | -> | Minus |
arm_2R | 6155651..6156474 | 13..838 | 99 | | Minus |
BO09865.5prime Sequence
862 bp (821 high quality bases) assembled on 2006-04-19
> BO09865.5prime
GAAGTTATCAGTCGACATGCTGGCCGCCCCGGAGAACCGCTTCCAGCATG
TGTACTTCGCGCTATCCGCCCTGGTGGCTAGCGCCATGCTCGTCCTGGTC
TACATATCCATGCGCTCGAGCCTTAACGAGCGGCTGCGCGAGGATCTGGC
CAAGGCGCAGCGACAGATGATCTTCGAGAGGCCGAATCCACACTGGGACT
ACAGCAACAGTTGGCGCCGGATAGGGAACAGCACGCTCAGGCATGAGATA
TACTCGGCGTATTTCGATGCCAGGACGGATATCGTAGGTAATGTCCGCAT
GGATGACGAGCAGATGACAATTGGTTCGCTGCGCATTTTCGCCATTCTGC
CGGAGCGTCTGCGCGACTCGTCGATAAACTGCATCGTGCGCTTCTCGGAC
TTCTCCAGCCAGGAGATCAAGGCCGAGGAGGCGGGCGCCATGCACGATGT
GCACAACAACACCTTTGCGGCGTGGAGCATCATGTGTCCGCTGCACGCCT
CCCGCCGCTCTCCCTTGCGCCTTCCCCAGGCAGTGGCCTTGGCCTACGCG
TCCAATCGACTCAGTCACCTTAGTCCTACCTTTATTCAGATCAGTTATCC
CCGCAACATGACCAACATGTTTGGCCGATCTCGACCCACGATCTCCGTGT
GTGTGGGTCCCCTCCACGAGAACTACTCGAATGTGCTGCGGCTGGTGGAG
TTCGTGGAGATGTACCGCCTGCAGGGTGCAACCCACTTCTACTTCTACTA
CGTAGAGGCCAGCGAGGAGGTGCTTCGCGTGCTGGAGCACTACCAACGGA
TTGGCCTGNCCGATGTCTTCGAATGGAATGTCCAAGCGCATATGCAGGAT
GTCCACTACGCC
BO09865.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12910-PA | 1401 | CG12910-RA | 1..846 | 17..862 | 4211 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12910-RC | 2487 | CG12910-RC | 847..1695 | 14..862 | 4234 | 99.9 | Plus |
CG12910-RA | 1702 | CG12910-RA | 62..910 | 14..862 | 4234 | 99.9 | Plus |
CG12910-RB | 1705 | CG12910-RB | 176..913 | 125..862 | 3679 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10267734..10268042 | 286..594 | 1545 | 100 | Plus |
2R | 25286936 | 2R | 10268143..10268413 | 592..862 | 1344 | 99.6 | Plus |
2R | 25286936 | 2R | 10267100..10267264 | 125..289 | 825 | 100 | Plus |
2R | 25286936 | 2R | 10266917..10267027 | 14..124 | 555 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 06:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 582..665 | 763..675 | 109 | 61.8 | Minus |
BO09865.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:22 Download gff for
BO09865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:33 Download gff for
BO09865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:40:37 Download gff for
BO09865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-RA | 58..910 | 8..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:51:26 Download gff for
BO09865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-RA | 58..910 | 8..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:51:26 Download gff for
BO09865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10266913..10267027 | 8..124 | 97 | -> | Plus |
2R | 10267100..10267262 | 125..287 | 100 | -> | Plus |
2R | 10267736..10268042 | 288..594 | 100 | -> | Plus |
2R | 10268146..10268413 | 595..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:40:37 Download gff for
BO09865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6154418..6154532 | 8..124 | 97 | -> | Plus |
arm_2R | 6154605..6154767 | 125..287 | 100 | -> | Plus |
arm_2R | 6155241..6155547 | 288..594 | 100 | -> | Plus |
arm_2R | 6155651..6155918 | 595..862 | 99 | | Plus |
BO09865.complete Sequence
1432 bp (1432 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631600
> BO09865.complete
GAAGTTATCAGTCGACATGCTGGCCGCCCCGGAGAACCGCTTCCAGCATG
TGTACTTCGCGCTATCCGCCCTGGTGGCTAGCGCCATGCTCGTCCTGGTC
TACATATCCATGCGCTCGAGCCTTAACGAGCGGCTGCGCGAGGATCTGGC
CAAGGCGCAGCGACAGATGATCTTCGAGAGGCCGAATCCACACTGGGACT
ACAGCAACAGTTGGCGCCGGATAGGGAACAGCACGCTCAGGCATGAGATA
TACTCGGCGTATTTCGATGCCAGGACGGATATCGTAGGTAATGTCCGCAT
GGATGACGAGCAGATGACAATTGGTTCGCTGCGCATTTTCGCCATTCTGC
CGGAGCGTCTGCGCGACTCGTCGATAAACTGCATCGTGCGCTTCTCGGAC
TTCTCCAGCCAGGAGATCAAGGCCGAGGAGGCGGGCGCCATGCACGATGT
GCACAACAACACCTTTGCGGCGTGGAGCATCATGTGTCCGCTGCACGCCT
CCCGCCGCTCTCCCTTGCGCCTTCCCCAGGCAGTGGCCTTGGCCTACGCG
TCCAATCGACTCAGTCACCTTAGTCCTACCTTTATTCAGATCAGTTATCC
CCGCAACATGACCAACATGTTTGGCCGATCTCGACCCACGATCTCCGTGT
GTGTGGGTCCCCTCCACGAGAACTACTCGAATGTGCTGCGGCTGGTGGAG
TTCGTGGAGATGTACCGCCTGCAGGGTGCAACCCACTTCTACTTCTACTA
CGTAGAGGCCAGCGAGGAGGTGCTTCGCGTGCTGGAGCACTACCAACGGA
TTGGCCTGGCCGATGTCTTCGAATGGAATGTCCAAGCGCATATGCAGGAT
GTCCACTACGCCGGAATCGTGGCGCAGTTCAACGACTGTGTGTACCGTGC
CAATGTGGTGGACAACTTTCGATACGCGGCAGTGGTGGACCTGGACGAGG
TGGTGATGCCGCTGAAGCACAACACCTTGGCGGACTACCTGCGCCAGTGC
GACGAGGGCCGCACCGCGGGCTTCGTCTTCCGCAACGTATTCTTCCACCG
GCGAGACAGTAACGACACCTTCAACGCCCCCAGCCACGTTCTCAACAGAC
TGCTCTACACCCAGTCGAAGGTGCGGCGAACGCTGGAGGTGCTGCCCGCC
TACATACGAAGCAAGGTGGTGGTGAATGCCAGGGCCATTGTGGAGATGGG
CAACCATCAGGTGTACCGCGCCGCACCCGGATACGCCGATCATGTGGTAC
ATCCCACGGTGGGCCTACTGTTCCACTACCGCGACAAGTGCATCAATTGC
AAGATGGTGCTGATCGTTGACTATACGGCCCGGAGATTTGGCTCACTGCT
CTTCGATCGAGTGGACAACACGTGCCTGGAGGTTTTTCTAAATCGCGGCA
TCTGCGATCTGGTGGCAAGCTTTCTAGACCAT
BO09865.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12910-RC | 1401 | CG12910-PC | 1..1398 | 17..1414 | 6990 | 100 | Plus |
CG12910-RA | 1401 | CG12910-PA | 1..1398 | 17..1414 | 6990 | 100 | Plus |
CG12910-RB | 1395 | CG12910-PB | 103..1392 | 125..1414 | 6450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12910-RC | 2487 | CG12910-RC | 847..2247 | 14..1414 | 7005 | 100 | Plus |
CG12910-RA | 1702 | CG12910-RA | 62..1462 | 14..1414 | 7005 | 100 | Plus |
CG12910-RB | 1705 | CG12910-RB | 176..1465 | 125..1414 | 6450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10268143..10268965 | 592..1414 | 4115 | 100 | Plus |
2R | 25286936 | 2R | 10267734..10268042 | 286..594 | 1545 | 100 | Plus |
2R | 25286936 | 2R | 10267100..10267264 | 125..289 | 825 | 100 | Plus |
2R | 25286936 | 2R | 10266917..10267027 | 14..124 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:03:38 has no hits.
BO09865.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:15 Download gff for
BO09865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-RA | 1..1401 | 17..1415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:26 Download gff for
BO09865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-RA | 45..1453 | 8..1420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:41 Download gff for
BO09865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-RA | 65..1462 | 17..1416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:15 Download gff for
BO09865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-RA | 45..1453 | 8..1420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:03 Download gff for
BO09865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-RA | 65..1462 | 17..1416 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:03 Download gff for
BO09865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10266920..10267027 | 17..124 | 100 | -> | Plus |
2R | 10267100..10267262 | 125..287 | 100 | -> | Plus |
2R | 10267736..10268042 | 288..594 | 100 | -> | Plus |
2R | 10268146..10268965 | 595..1416 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:41 Download gff for
BO09865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6154425..6154532 | 17..124 | 100 | -> | Plus |
arm_2R | 6154605..6154767 | 125..287 | 100 | -> | Plus |
arm_2R | 6155241..6155547 | 288..594 | 100 | -> | Plus |
arm_2R | 6155651..6156470 | 595..1416 | 99 | | Plus |
BO09865.pep Sequence
Translation from 16 to 1432
> BO09865.pep
MLAAPENRFQHVYFALSALVASAMLVLVYISMRSSLNERLREDLAKAQRQ
MIFERPNPHWDYSNSWRRIGNSTLRHEIYSAYFDARTDIVGNVRMDDEQM
TIGSLRIFAILPERLRDSSINCIVRFSDFSSQEIKAEEAGAMHDVHNNTF
AAWSIMCPLHASRRSPLRLPQAVALAYASNRLSHLSPTFIQISYPRNMTN
MFGRSRPTISVCVGPLHENYSNVLRLVEFVEMYRLQGATHFYFYYVEASE
EVLRVLEHYQRIGLADVFEWNVQAHMQDVHYAGIVAQFNDCVYRANVVDN
FRYAAVVDLDEVVMPLKHNTLADYLRQCDEGRTAGFVFRNVFFHRRDSND
TFNAPSHVLNRLLYTQSKVRRTLEVLPAYIRSKVVVNARAIVEMGNHQVY
RAAPGYADHVVHPTVGLLFHYRDKCINCKMVLIVDYTARRFGSLLFDRVD
NTCLEVFLNRGICDLVASFLDH
BO09865.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12910-PC | 466 | CG12910-PC | 1..466 | 1..466 | 2438 | 100 | Plus |
CG12910-PA | 466 | CG12910-PA | 1..466 | 1..466 | 2438 | 100 | Plus |
CG12910-PB | 464 | CG12910-PB | 18..464 | 24..466 | 2274 | 97.1 | Plus |
CG9395-PD | 840 | CG9395-PD | 230..711 | 54..467 | 326 | 27.1 | Plus |
CG9395-PC | 840 | CG9395-PC | 230..711 | 54..467 | 326 | 27.1 | Plus |