Clone BO09865 Report

Search the DGRC for BO09865

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG12910-RA
Protein status:BO09865.pep: validated full length
Sequenced Size:1432

Clone Sequence Records

BO09865.3prime Sequence

969 bp (792 high quality bases) assembled on 2006-04-19

> BO09865.3prime
ATGGTCTAGAAAGCTTGCCACCAGATCGCAGATGCCGCGATTTAGAAAAA
CCTCCAGGCACGTGTTGTCCACTCGATCGAAGAGCAGTGAGCCAAATCTC
CGGGCCGTATAGTCAACGATCAGCACCATCTTGCAATTGATGCACTTGTC
GCGGTAGTGGAACAGTAGGCCCACCGTGGGATGTACCACATGATCGGCGT
ATCCGGGTGCGGCGCGGTACACCTGATGGTTGCCCATCTCCACAATGGCC
CTGGCATTCACCACCACCTTGCTTCGTATGTAGGCGGGCAGCACCTCCAG
CGTTCGCCGCACCTTCGACTGGGTGTAGAGCAGTCTGTTGAGAACGTGGC
TGGGGGCGTTGAAGGTGTCGTTACTGTCTCGCCGGTGGAAGAATACGTTG
CGGAAGACGAAGCCCGCGGTGCGGCCCTCGTCGCACTGGCGCAGGTAGTC
CGCCAAGGTGTTGTGCTTCAGCGGCATCACCACCTCGTCCAGGTCCACCA
CTGCCGCGTATCGAAAGTTGTCCACCACATTGGCACGGTACACACAGTCG
TTGAACTGCGCCACGATTCCGGCGTAGTGGACATCCTGCATATGCGCTTG
GACATTCCATTCGAAGACATCGGCCAGGCCAATCCGTTGGTAGTGCTCCA
GCACGCGAAGCACCTCCTCGCTGGCCTCTACGTAGTAGAAGTAGAAGTGG
GTTGCACCCTGCAGGCGGTACATCTCCACGAACTCCACCAGCCGCAGCAC
ATTCGAGTAGTTCTCGTGGAGGGGACCCACACACACGGAGATCGTGGGTC
GAGATCGGCCAAACATGTTGGTCATGTTGCGGGGGATACTGATCTGAATA
AAGGTAGGACTAAGGTGACTGAGTCGATTGGACGCGTAGGCCAAGGGCAC
TGCCTGGGGGAAGGCGCAAGGGAGAGCGGCGGGAGGCGTGCAGCGGACAC
ATGATGCTCCACGCGGCAA

BO09865.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-PA 1401 CG12910-RA 583..1398 834..19 4080 100 Minus
CG12910-PA 1401 CG12910-RA 508..579 909..838 335 98.6 Minus
CG12910-PA 1401 CG12910-RA 454..511 964..907 290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-RC 2487 CG12910-RC 1298..2247 969..19 4655 99.5 Minus
CG12910-RB 1705 CG12910-RB 516..1465 969..19 4655 99.5 Minus
CG12910-RA 1702 CG12910-RA 513..1462 969..19 4655 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10268150..10268965 834..19 4080 100 Minus
2R 25286936 2R 10267913..10268042 969..839 575 97.7 Minus
Blast to na_te.dros performed 2015-02-12 03:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 582..665 670..758 109 61.8 Plus

BO09865.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:21 Download gff for BO09865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-PA 451..1401 18..967 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:32 Download gff for BO09865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-PA 451..1401 18..967 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:14:43 Download gff for BO09865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 515..1466 13..967 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:38 Download gff for BO09865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 515..1466 13..967 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:38 Download gff for BO09865.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10267915..10268042 839..967 97 -> Minus
2R 10268146..10268969 13..838 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:14:43 Download gff for BO09865.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6155420..6155547 839..967 97 -> Minus
arm_2R 6155651..6156474 13..838 99   Minus

BO09865.5prime Sequence

862 bp (821 high quality bases) assembled on 2006-04-19

> BO09865.5prime
GAAGTTATCAGTCGACATGCTGGCCGCCCCGGAGAACCGCTTCCAGCATG
TGTACTTCGCGCTATCCGCCCTGGTGGCTAGCGCCATGCTCGTCCTGGTC
TACATATCCATGCGCTCGAGCCTTAACGAGCGGCTGCGCGAGGATCTGGC
CAAGGCGCAGCGACAGATGATCTTCGAGAGGCCGAATCCACACTGGGACT
ACAGCAACAGTTGGCGCCGGATAGGGAACAGCACGCTCAGGCATGAGATA
TACTCGGCGTATTTCGATGCCAGGACGGATATCGTAGGTAATGTCCGCAT
GGATGACGAGCAGATGACAATTGGTTCGCTGCGCATTTTCGCCATTCTGC
CGGAGCGTCTGCGCGACTCGTCGATAAACTGCATCGTGCGCTTCTCGGAC
TTCTCCAGCCAGGAGATCAAGGCCGAGGAGGCGGGCGCCATGCACGATGT
GCACAACAACACCTTTGCGGCGTGGAGCATCATGTGTCCGCTGCACGCCT
CCCGCCGCTCTCCCTTGCGCCTTCCCCAGGCAGTGGCCTTGGCCTACGCG
TCCAATCGACTCAGTCACCTTAGTCCTACCTTTATTCAGATCAGTTATCC
CCGCAACATGACCAACATGTTTGGCCGATCTCGACCCACGATCTCCGTGT
GTGTGGGTCCCCTCCACGAGAACTACTCGAATGTGCTGCGGCTGGTGGAG
TTCGTGGAGATGTACCGCCTGCAGGGTGCAACCCACTTCTACTTCTACTA
CGTAGAGGCCAGCGAGGAGGTGCTTCGCGTGCTGGAGCACTACCAACGGA
TTGGCCTGNCCGATGTCTTCGAATGGAATGTCCAAGCGCATATGCAGGAT
GTCCACTACGCC

BO09865.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-PA 1401 CG12910-RA 1..846 17..862 4211 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-RC 2487 CG12910-RC 847..1695 14..862 4234 99.9 Plus
CG12910-RA 1702 CG12910-RA 62..910 14..862 4234 99.9 Plus
CG12910-RB 1705 CG12910-RB 176..913 125..862 3679 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10267734..10268042 286..594 1545 100 Plus
2R 25286936 2R 10268143..10268413 592..862 1344 99.6 Plus
2R 25286936 2R 10267100..10267264 125..289 825 100 Plus
2R 25286936 2R 10266917..10267027 14..124 555 100 Plus
Blast to na_te.dros performed 2015-02-12 06:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 582..665 763..675 109 61.8 Minus

BO09865.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:22 Download gff for BO09865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:33 Download gff for BO09865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:40:37 Download gff for BO09865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 58..910 8..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:51:26 Download gff for BO09865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 58..910 8..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:51:26 Download gff for BO09865.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10266913..10267027 8..124 97 -> Plus
2R 10267100..10267262 125..287 100 -> Plus
2R 10267736..10268042 288..594 100 -> Plus
2R 10268146..10268413 595..862 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:40:37 Download gff for BO09865.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6154418..6154532 8..124 97 -> Plus
arm_2R 6154605..6154767 125..287 100 -> Plus
arm_2R 6155241..6155547 288..594 100 -> Plus
arm_2R 6155651..6155918 595..862 99   Plus

BO09865.complete Sequence

1432 bp (1432 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631600

> BO09865.complete
GAAGTTATCAGTCGACATGCTGGCCGCCCCGGAGAACCGCTTCCAGCATG
TGTACTTCGCGCTATCCGCCCTGGTGGCTAGCGCCATGCTCGTCCTGGTC
TACATATCCATGCGCTCGAGCCTTAACGAGCGGCTGCGCGAGGATCTGGC
CAAGGCGCAGCGACAGATGATCTTCGAGAGGCCGAATCCACACTGGGACT
ACAGCAACAGTTGGCGCCGGATAGGGAACAGCACGCTCAGGCATGAGATA
TACTCGGCGTATTTCGATGCCAGGACGGATATCGTAGGTAATGTCCGCAT
GGATGACGAGCAGATGACAATTGGTTCGCTGCGCATTTTCGCCATTCTGC
CGGAGCGTCTGCGCGACTCGTCGATAAACTGCATCGTGCGCTTCTCGGAC
TTCTCCAGCCAGGAGATCAAGGCCGAGGAGGCGGGCGCCATGCACGATGT
GCACAACAACACCTTTGCGGCGTGGAGCATCATGTGTCCGCTGCACGCCT
CCCGCCGCTCTCCCTTGCGCCTTCCCCAGGCAGTGGCCTTGGCCTACGCG
TCCAATCGACTCAGTCACCTTAGTCCTACCTTTATTCAGATCAGTTATCC
CCGCAACATGACCAACATGTTTGGCCGATCTCGACCCACGATCTCCGTGT
GTGTGGGTCCCCTCCACGAGAACTACTCGAATGTGCTGCGGCTGGTGGAG
TTCGTGGAGATGTACCGCCTGCAGGGTGCAACCCACTTCTACTTCTACTA
CGTAGAGGCCAGCGAGGAGGTGCTTCGCGTGCTGGAGCACTACCAACGGA
TTGGCCTGGCCGATGTCTTCGAATGGAATGTCCAAGCGCATATGCAGGAT
GTCCACTACGCCGGAATCGTGGCGCAGTTCAACGACTGTGTGTACCGTGC
CAATGTGGTGGACAACTTTCGATACGCGGCAGTGGTGGACCTGGACGAGG
TGGTGATGCCGCTGAAGCACAACACCTTGGCGGACTACCTGCGCCAGTGC
GACGAGGGCCGCACCGCGGGCTTCGTCTTCCGCAACGTATTCTTCCACCG
GCGAGACAGTAACGACACCTTCAACGCCCCCAGCCACGTTCTCAACAGAC
TGCTCTACACCCAGTCGAAGGTGCGGCGAACGCTGGAGGTGCTGCCCGCC
TACATACGAAGCAAGGTGGTGGTGAATGCCAGGGCCATTGTGGAGATGGG
CAACCATCAGGTGTACCGCGCCGCACCCGGATACGCCGATCATGTGGTAC
ATCCCACGGTGGGCCTACTGTTCCACTACCGCGACAAGTGCATCAATTGC
AAGATGGTGCTGATCGTTGACTATACGGCCCGGAGATTTGGCTCACTGCT
CTTCGATCGAGTGGACAACACGTGCCTGGAGGTTTTTCTAAATCGCGGCA
TCTGCGATCTGGTGGCAAGCTTTCTAGACCAT

BO09865.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-RC 1401 CG12910-PC 1..1398 17..1414 6990 100 Plus
CG12910-RA 1401 CG12910-PA 1..1398 17..1414 6990 100 Plus
CG12910-RB 1395 CG12910-PB 103..1392 125..1414 6450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-RC 2487 CG12910-RC 847..2247 14..1414 7005 100 Plus
CG12910-RA 1702 CG12910-RA 62..1462 14..1414 7005 100 Plus
CG12910-RB 1705 CG12910-RB 176..1465 125..1414 6450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10268143..10268965 592..1414 4115 100 Plus
2R 25286936 2R 10267734..10268042 286..594 1545 100 Plus
2R 25286936 2R 10267100..10267264 125..289 825 100 Plus
2R 25286936 2R 10266917..10267027 14..124 555 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:03:38 has no hits.

BO09865.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:15 Download gff for BO09865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 1..1401 17..1415 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:26 Download gff for BO09865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 45..1453 8..1420 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:41 Download gff for BO09865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 65..1462 17..1416 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:15 Download gff for BO09865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 45..1453 8..1420 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:03 Download gff for BO09865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 65..1462 17..1416 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:03 Download gff for BO09865.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10266920..10267027 17..124 100 -> Plus
2R 10267100..10267262 125..287 100 -> Plus
2R 10267736..10268042 288..594 100 -> Plus
2R 10268146..10268965 595..1416 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:41 Download gff for BO09865.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6154425..6154532 17..124 100 -> Plus
arm_2R 6154605..6154767 125..287 100 -> Plus
arm_2R 6155241..6155547 288..594 100 -> Plus
arm_2R 6155651..6156470 595..1416 99   Plus

BO09865.pep Sequence

Translation from 16 to 1432

> BO09865.pep
MLAAPENRFQHVYFALSALVASAMLVLVYISMRSSLNERLREDLAKAQRQ
MIFERPNPHWDYSNSWRRIGNSTLRHEIYSAYFDARTDIVGNVRMDDEQM
TIGSLRIFAILPERLRDSSINCIVRFSDFSSQEIKAEEAGAMHDVHNNTF
AAWSIMCPLHASRRSPLRLPQAVALAYASNRLSHLSPTFIQISYPRNMTN
MFGRSRPTISVCVGPLHENYSNVLRLVEFVEMYRLQGATHFYFYYVEASE
EVLRVLEHYQRIGLADVFEWNVQAHMQDVHYAGIVAQFNDCVYRANVVDN
FRYAAVVDLDEVVMPLKHNTLADYLRQCDEGRTAGFVFRNVFFHRRDSND
TFNAPSHVLNRLLYTQSKVRRTLEVLPAYIRSKVVVNARAIVEMGNHQVY
RAAPGYADHVVHPTVGLLFHYRDKCINCKMVLIVDYTARRFGSLLFDRVD
NTCLEVFLNRGICDLVASFLDH

BO09865.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-PC 466 CG12910-PC 1..466 1..466 2438 100 Plus
CG12910-PA 466 CG12910-PA 1..466 1..466 2438 100 Plus
CG12910-PB 464 CG12910-PB 18..464 24..466 2274 97.1 Plus
CG9395-PD 840 CG9395-PD 230..711 54..467 326 27.1 Plus
CG9395-PC 840 CG9395-PC 230..711 54..467 326 27.1 Plus