Clone BO09868 Report

Search the DGRC for BO09868

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptIdgf1-RA
Protein status:BO09868.pep: validated full length
Sequenced Size:1351

Clone Sequence Records

BO09868.3prime Sequence

993 bp (794 high quality bases) assembled on 2006-04-19

> BO09868.3prime
ATGGTCTAGAAAGCTTGCTCCCATAAAGTACTTAATTGACCGCAGTATGG
GGTACTTTTGGCCAGTGCAAAGTCCACGGAAGTCATCGTAACTTAAATCG
AAAAGGGCAATTCCGCCGAGTCCTTTGCCCTTGGCATATACTGCCTTTAT
TCCAGCAAAATCCGGATCATCGAAGCTCAGCCATACGCCAAAATCTCCAT
TATCATCTGCTGGCCGGAGAGCGTAATTTCCGTATTTCTGGGTGAGATCC
GTGACCTTGCGGAGCGGCGCCAATTCTCCTCTATATTGAGCGGATGCGTT
CTGCGACAACTTCGAGCAAATCTCTGGCCAACTTAGTAAGCCCTCAGCAC
TCTGGATTTGTATTCCGCCGGGTGCAACTCCACATGTCTCATGAACAATG
GGAGCACCACTGAGTCCAGATCCCTTCGATAATTTCCATGCTCTGCCATA
ACTGGCTATTCCCAGGTTCAATTTTTGGCCAGGACAATGATTCTGCAGCC
AATAGTTAATCTGGAACTCCACATTCAAATGGGGCAAGCGATTCTGTTCG
TCCTGGAAGAAAATCGGAGCTGTGAAGTCCGCCTCCTCGGGATTTCGTAG
TGGGGTGAGAAAGTCGAAGGCCGCCAGGTTTATATAGTCGAACTGGGGAT
GCAGTTTGGGGACATCGAAGTACCAAGTGGAGTTCACATTGGGCAGGACT
GTCAGAGACAGCATCAGATTAGCAGATCGAAAGGCATTCTTTATATTTCC
AACGAGATCGGTGAATTGTGACTTGTGCTCCTCCGCCTGCGGGTCCACAA
CGAAGTCACCAGTGAAAAGCTTCTTGAACGACTTCCAGTAAGATCCAAGG
GATCCATGGACTTTTCTGGGCTTATTACGGGGTAACTGGAACGCGAGATC
AAGGCCATCGAATCCATTTCGCTTAAGGCAAATCATGCTGCTGTCTATAA
ATTCTGCTGAGCCGTGCGATTCGCCTCCAGAAGCTCTACATAT

BO09868.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4472-PA 1320 Idgf1-RA 385..1317 951..19 4615 99.7 Minus
CG4472-PA 1320 Idgf1-RA 342..386 993..949 225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf1-RA 1445 CG4472-RA 393..1368 993..19 4825 99.7 Minus
Idgf2-RB 1796 CG4475-RB 1059..1199 706..566 210 76.6 Minus
Idgf2-RC 1367 CG4475-RC 630..770 706..566 210 76.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16446061..16446716 674..19 3280 100 Minus
2L 23513712 2L 16445670..16445990 993..674 1525 99.1 Minus
Blast to na_te.dros performed on 2015-01-31 15:38:20 has no hits.

BO09868.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:27 Download gff for BO09868.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf1-PA 342..1320 15..993 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:39 Download gff for BO09868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4472-PA 342..1320 15..993 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:42 Download gff for BO09868.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 393..1378 10..993 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:43:56 Download gff for BO09868.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 393..1378 10..993 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:43:56 Download gff for BO09868.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16445670..16445989 675..993 99 -> Minus
2L 16446061..16446726 10..674 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:42 Download gff for BO09868.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16445670..16445989 675..993 99 -> Minus
arm_2L 16446061..16446726 10..674 99   Minus

BO09868.5prime Sequence

942 bp (856 high quality bases) assembled on 2006-04-19

> BO09868.5prime
GAAGTTATCAGTCGACATGAGATTCCAGTTGTTTTATATACTGGGCTTGC
TCAGTGTGACAAGTTTGACCCATGCTGCCAGCAATCTGATTTGTTATTAT
GACTCCAACTCGTATTTGCGCCAAGGTTTGGCCAAAATGCATACCAACGA
ATTGGATTTGGCCCTGCAGTTCTGCACCCATTTGGTTTACGGATATGCGG
GCCTGAAGTCCGGTACCCTCGAGCTATTCAGTCTGAATGTGGACCTGGAC
ATGTTCTACTACAAGGACATCACCGCCCTGCGACAGAAGTTTCCTCAACT
GAAGATTCTCCTCAGCGTGGGTGGAGATCGCGATGTGGATGAGGCCCACC
CCAATAAATATGTAGAGCTTCTGGAGGCGAATCGCACGGCTCAGCAGAAT
TTTATAGACAGCAGCATGATTTTGCTTAAGCGAAATGGATTCGATGGCCT
TGATCTCGCGTTCCAGTTACCCCGTAATAAGCCCAGAAAAGTCCATGGAT
CCCTTGGATCTTACTGGAAGTCGTTCAAGAAGCTTTTCACTGGTGACTTC
GTTGTGGACCCGCAGGCGGAGGAGCACAAGTCACAATTCACCGATCTCGT
TGGAAATATAAAGAATGCCTTTCGATCTGCTAATCTGATGCTGTCTCTGA
CAGTCCTGCCCAATGTGAACTCCACTTGGTACTTCGATGTCCCCAAACTG
CATCCCCAGTTCGACTATATAAACCTGGCGGCCTTCGACTTTCTCACCCC
ACTACGAAATCCCGAGGAGGCGGACTTCACAGCTCCGATTTTCTTCCAGG
ACGAACAGAATCGCTTGCCCCATTTGAATGTGGAGTTCCAGATTAACTAT
TGGCTGCAGAATCATTGTCCTGGCCAAAAATTGAACCTGGGAATAGCCAG
TTATGGCAGAGCATGAAAATTATCGAAGGGATCTGGACTCAG

BO09868.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4472-PA 1320 Idgf1-RA 1..926 17..942 4605 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf1-RA 1445 CG4472-RA 52..977 17..942 4615 99.9 Plus
Idgf2-RB 1796 CG4475-RB 1059..1199 646..786 210 76.6 Plus
Idgf2-RC 1367 CG4475-RC 630..770 646..786 210 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16445329..16445990 17..678 3310 100 Plus
2L 23513712 2L 16446061..16446325 678..942 1310 99.6 Plus
Blast to na_te.dros performed on 2015-02-04 03:47:56 has no hits.

BO09868.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:28 Download gff for BO09868.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf1-PA 1..926 17..942 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:41 Download gff for BO09868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4472-PA 1..926 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:55:48 Download gff for BO09868.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 52..977 17..942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:31:49 Download gff for BO09868.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 52..977 17..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:31:49 Download gff for BO09868.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16445329..16445989 17..677 100 -> Plus
2L 16446061..16446325 678..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:55:48 Download gff for BO09868.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16445329..16445989 17..677 100 -> Plus
arm_2L 16446061..16446325 678..942 99   Plus

BO09868.complete Sequence

1351 bp (1351 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631601

> BO09868.complete
GAAGTTATCAGTCGACATGAGATTCCAGTTGTTTTATATACTGGGCTTGC
TCAGTGTGACAAGTTTGACCCATGCTGCCAGCAATCTGATTTGTTATTAT
GACTCCAACTCGTATTTGCGCCAAGGTTTGGCCAAAATGCATACCAACGA
ATTGGATTTGGCCCTGCAGTTCTGCACCCATTTGGTTTACGGATATGCGG
GCCTGAAGTCCGGTACCCTCGAGCTATTCAGTCTGAATGTGGACCTGGAC
ATGTTCTACTACAAGGACATCACCGCCCTGCGACAGAAGTTTCCTCAACT
GAAGATTCTCCTCAGCGTGGGTGGAGATCGCGATGTGGATGAGGCCCACC
CCAATAAATATGTAGAGCTTCTGGAGGCGAATCGCACGGCTCAGCAGAAT
TTTATAGACAGCAGCATGATTTTGCTTAAGCGAAATGGATTCGATGGCCT
TGATCTCGCGTTCCAGTTACCCCGTAATAAGCCCAGAAAAGTCCATGGAT
CCCTTGGATCTTACTGGAAGTCGTTCAAGAAGCTTTTCACTGGTGACTTC
GTTGTGGACCCGCAGGCGGAGGAGCACAAGTCACAATTCACCGATCTCGT
TGGAAATATAAAGAATGCCTTTCGATCTGCTAATCTGATGCTGTCTCTGA
CAGTCCTGCCCAATGTGAACTCCACTTGGTACTTCGATGTCCCCAAACTG
CATCCCCAGTTCGACTATATAAACCTGGCGGCCTTCGACTTTCTCACCCC
ACTACGAAATCCCGAGGAGGCGGACTTCACAGCTCCGATTTTCTTCCAGG
ACGAACAGAATCGCTTGCCCCATTTGAATGTGGAGTTCCAGATTAACTAT
TGGCTGCAGAATCATTGTCCTGGCCAAAAATTGAACCTGGGAATAGCCAG
TTATGGCAGAGCATGGAAATTATCGAAGGGATCTGGACTCAGTGGTGCTC
CCATTGTTCATGAGACATGTGGAGTTGCACCCGGCGGAATACAAATCCAG
AGTGCTGAGGGCTTACTAAGTTGGCCAGAGATTTGCTCGAAGTTGTCGCA
GAACGCATCCGCTCAATATAGAGGAGAATTGGCGCCGCTCCGCAAGGTCA
CGGATCTCACCCAGAAATACGGAAATTACGCTCTCCGGCCAGCAGATGAT
AATGGAGATTTTGGCGTATGGCTGAGCTTCGATGATCCGGATTTTGCTGG
AATAAAGGCAGTATATGCCAAGGGCAAAGGACTCGGCGGAATTGCCCTTT
TCGATTTAAGTTACGATGACTTCCGTGGACTTTGCACTGGCCAAAAGTAC
CCCATACTGCGGTCAATTAAGTACTTTATGGGAGCAAGCTTTCTAGACCA
T

BO09868.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf1-RA 1320 CG4472-PA 1..1317 17..1333 6585 100 Plus
Idgf2-RB 1107 CG4475-PB 420..560 646..786 210 76.6 Plus
Idgf2-RC 1107 CG4475-PC 420..560 646..786 210 76.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf1-RA 1445 CG4472-RA 52..1368 17..1333 6585 100 Plus
Idgf2-RB 1796 CG4475-RB 1059..1199 646..786 210 76.6 Plus
Idgf2-RC 1367 CG4475-RC 630..770 646..786 210 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16445329..16445990 17..678 3310 100 Plus
2L 23513712 2L 16446061..16446716 678..1333 3280 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:21:45 has no hits.

BO09868.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:16 Download gff for BO09868.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 1..1320 17..1337 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:07 Download gff for BO09868.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 50..1376 17..1342 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:58 Download gff for BO09868.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 52..1368 17..1335 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:17 Download gff for BO09868.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 50..1376 17..1342 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:48 Download gff for BO09868.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 52..1368 17..1335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:48 Download gff for BO09868.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16445329..16445989 17..677 100 -> Plus
2L 16446061..16446716 678..1335 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:58 Download gff for BO09868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16445329..16445989 17..677 100 -> Plus
arm_2L 16446061..16446716 678..1335 99   Plus

BO09868.pep Sequence

Translation from 16 to 1351

> BO09868.pep
MRFQLFYILGLLSVTSLTHAASNLICYYDSNSYLRQGLAKMHTNELDLAL
QFCTHLVYGYAGLKSGTLELFSLNVDLDMFYYKDITALRQKFPQLKILLS
VGGDRDVDEAHPNKYVELLEANRTAQQNFIDSSMILLKRNGFDGLDLAFQ
LPRNKPRKVHGSLGSYWKSFKKLFTGDFVVDPQAEEHKSQFTDLVGNIKN
AFRSANLMLSLTVLPNVNSTWYFDVPKLHPQFDYINLAAFDFLTPLRNPE
EADFTAPIFFQDEQNRLPHLNVEFQINYWLQNHCPGQKLNLGIASYGRAW
KLSKGSGLSGAPIVHETCGVAPGGIQIQSAEGLLSWPEICSKLSQNASAQ
YRGELAPLRKVTDLTQKYGNYALRPADDNGDFGVWLSFDDPDFAGIKAVY
AKGKGLGGIALFDLSYDDFRGLCTGQKYPILRSIKYFMGASFLDH

BO09868.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf1-PA 439 CG4472-PA 1..439 1..439 2326 100 Plus
Idgf2-PA 440 CG4475-PA 18..438 18..436 1338 58.5 Plus
Idgf3-PD 441 CG4559-PD 23..438 20..436 1242 54.4 Plus
Idgf3-PA 441 CG4559-PA 23..438 20..436 1242 54.4 Plus
Idgf3-PB 441 CG4559-PB 23..438 20..436 1242 54.4 Plus