Clone Sequence Records
BO09868.3prime Sequence
993 bp (794 high quality bases) assembled on 2006-04-19
> BO09868.3prime
ATGGTCTAGAAAGCTTGCTCCCATAAAGTACTTAATTGACCGCAGTATGG
GGTACTTTTGGCCAGTGCAAAGTCCACGGAAGTCATCGTAACTTAAATCG
AAAAGGGCAATTCCGCCGAGTCCTTTGCCCTTGGCATATACTGCCTTTAT
TCCAGCAAAATCCGGATCATCGAAGCTCAGCCATACGCCAAAATCTCCAT
TATCATCTGCTGGCCGGAGAGCGTAATTTCCGTATTTCTGGGTGAGATCC
GTGACCTTGCGGAGCGGCGCCAATTCTCCTCTATATTGAGCGGATGCGTT
CTGCGACAACTTCGAGCAAATCTCTGGCCAACTTAGTAAGCCCTCAGCAC
TCTGGATTTGTATTCCGCCGGGTGCAACTCCACATGTCTCATGAACAATG
GGAGCACCACTGAGTCCAGATCCCTTCGATAATTTCCATGCTCTGCCATA
ACTGGCTATTCCCAGGTTCAATTTTTGGCCAGGACAATGATTCTGCAGCC
AATAGTTAATCTGGAACTCCACATTCAAATGGGGCAAGCGATTCTGTTCG
TCCTGGAAGAAAATCGGAGCTGTGAAGTCCGCCTCCTCGGGATTTCGTAG
TGGGGTGAGAAAGTCGAAGGCCGCCAGGTTTATATAGTCGAACTGGGGAT
GCAGTTTGGGGACATCGAAGTACCAAGTGGAGTTCACATTGGGCAGGACT
GTCAGAGACAGCATCAGATTAGCAGATCGAAAGGCATTCTTTATATTTCC
AACGAGATCGGTGAATTGTGACTTGTGCTCCTCCGCCTGCGGGTCCACAA
CGAAGTCACCAGTGAAAAGCTTCTTGAACGACTTCCAGTAAGATCCAAGG
GATCCATGGACTTTTCTGGGCTTATTACGGGGTAACTGGAACGCGAGATC
AAGGCCATCGAATCCATTTCGCTTAAGGCAAATCATGCTGCTGTCTATAA
ATTCTGCTGAGCCGTGCGATTCGCCTCCAGAAGCTCTACATAT
BO09868.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4472-PA | 1320 | Idgf1-RA | 385..1317 | 951..19 | 4615 | 99.7 | Minus |
CG4472-PA | 1320 | Idgf1-RA | 342..386 | 993..949 | 225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf1-RA | 1445 | CG4472-RA | 393..1368 | 993..19 | 4825 | 99.7 | Minus |
Idgf2-RB | 1796 | CG4475-RB | 1059..1199 | 706..566 | 210 | 76.6 | Minus |
Idgf2-RC | 1367 | CG4475-RC | 630..770 | 706..566 | 210 | 76.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16446061..16446716 | 674..19 | 3280 | 100 | Minus |
2L | 23513712 | 2L | 16445670..16445990 | 993..674 | 1525 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-01-31 15:38:20 has no hits.
BO09868.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:27 Download gff for
BO09868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-PA | 342..1320 | 15..993 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:39 Download gff for
BO09868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4472-PA | 342..1320 | 15..993 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:42 Download gff for
BO09868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 393..1378 | 10..993 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:43:56 Download gff for
BO09868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 393..1378 | 10..993 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:43:56 Download gff for
BO09868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16445670..16445989 | 675..993 | 99 | -> | Minus |
2L | 16446061..16446726 | 10..674 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:42 Download gff for
BO09868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16445670..16445989 | 675..993 | 99 | -> | Minus |
arm_2L | 16446061..16446726 | 10..674 | 99 | | Minus |
BO09868.5prime Sequence
942 bp (856 high quality bases) assembled on 2006-04-19
> BO09868.5prime
GAAGTTATCAGTCGACATGAGATTCCAGTTGTTTTATATACTGGGCTTGC
TCAGTGTGACAAGTTTGACCCATGCTGCCAGCAATCTGATTTGTTATTAT
GACTCCAACTCGTATTTGCGCCAAGGTTTGGCCAAAATGCATACCAACGA
ATTGGATTTGGCCCTGCAGTTCTGCACCCATTTGGTTTACGGATATGCGG
GCCTGAAGTCCGGTACCCTCGAGCTATTCAGTCTGAATGTGGACCTGGAC
ATGTTCTACTACAAGGACATCACCGCCCTGCGACAGAAGTTTCCTCAACT
GAAGATTCTCCTCAGCGTGGGTGGAGATCGCGATGTGGATGAGGCCCACC
CCAATAAATATGTAGAGCTTCTGGAGGCGAATCGCACGGCTCAGCAGAAT
TTTATAGACAGCAGCATGATTTTGCTTAAGCGAAATGGATTCGATGGCCT
TGATCTCGCGTTCCAGTTACCCCGTAATAAGCCCAGAAAAGTCCATGGAT
CCCTTGGATCTTACTGGAAGTCGTTCAAGAAGCTTTTCACTGGTGACTTC
GTTGTGGACCCGCAGGCGGAGGAGCACAAGTCACAATTCACCGATCTCGT
TGGAAATATAAAGAATGCCTTTCGATCTGCTAATCTGATGCTGTCTCTGA
CAGTCCTGCCCAATGTGAACTCCACTTGGTACTTCGATGTCCCCAAACTG
CATCCCCAGTTCGACTATATAAACCTGGCGGCCTTCGACTTTCTCACCCC
ACTACGAAATCCCGAGGAGGCGGACTTCACAGCTCCGATTTTCTTCCAGG
ACGAACAGAATCGCTTGCCCCATTTGAATGTGGAGTTCCAGATTAACTAT
TGGCTGCAGAATCATTGTCCTGGCCAAAAATTGAACCTGGGAATAGCCAG
TTATGGCAGAGCATGAAAATTATCGAAGGGATCTGGACTCAG
BO09868.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4472-PA | 1320 | Idgf1-RA | 1..926 | 17..942 | 4605 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf1-RA | 1445 | CG4472-RA | 52..977 | 17..942 | 4615 | 99.9 | Plus |
Idgf2-RB | 1796 | CG4475-RB | 1059..1199 | 646..786 | 210 | 76.6 | Plus |
Idgf2-RC | 1367 | CG4475-RC | 630..770 | 646..786 | 210 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16445329..16445990 | 17..678 | 3310 | 100 | Plus |
2L | 23513712 | 2L | 16446061..16446325 | 678..942 | 1310 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:47:56 has no hits.
BO09868.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:28 Download gff for
BO09868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:41 Download gff for
BO09868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4472-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:55:48 Download gff for
BO09868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 52..977 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:31:49 Download gff for
BO09868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 52..977 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:31:49 Download gff for
BO09868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16445329..16445989 | 17..677 | 100 | -> | Plus |
2L | 16446061..16446325 | 678..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:55:48 Download gff for
BO09868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16445329..16445989 | 17..677 | 100 | -> | Plus |
arm_2L | 16446061..16446325 | 678..942 | 99 | | Plus |
BO09868.complete Sequence
1351 bp (1351 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631601
> BO09868.complete
GAAGTTATCAGTCGACATGAGATTCCAGTTGTTTTATATACTGGGCTTGC
TCAGTGTGACAAGTTTGACCCATGCTGCCAGCAATCTGATTTGTTATTAT
GACTCCAACTCGTATTTGCGCCAAGGTTTGGCCAAAATGCATACCAACGA
ATTGGATTTGGCCCTGCAGTTCTGCACCCATTTGGTTTACGGATATGCGG
GCCTGAAGTCCGGTACCCTCGAGCTATTCAGTCTGAATGTGGACCTGGAC
ATGTTCTACTACAAGGACATCACCGCCCTGCGACAGAAGTTTCCTCAACT
GAAGATTCTCCTCAGCGTGGGTGGAGATCGCGATGTGGATGAGGCCCACC
CCAATAAATATGTAGAGCTTCTGGAGGCGAATCGCACGGCTCAGCAGAAT
TTTATAGACAGCAGCATGATTTTGCTTAAGCGAAATGGATTCGATGGCCT
TGATCTCGCGTTCCAGTTACCCCGTAATAAGCCCAGAAAAGTCCATGGAT
CCCTTGGATCTTACTGGAAGTCGTTCAAGAAGCTTTTCACTGGTGACTTC
GTTGTGGACCCGCAGGCGGAGGAGCACAAGTCACAATTCACCGATCTCGT
TGGAAATATAAAGAATGCCTTTCGATCTGCTAATCTGATGCTGTCTCTGA
CAGTCCTGCCCAATGTGAACTCCACTTGGTACTTCGATGTCCCCAAACTG
CATCCCCAGTTCGACTATATAAACCTGGCGGCCTTCGACTTTCTCACCCC
ACTACGAAATCCCGAGGAGGCGGACTTCACAGCTCCGATTTTCTTCCAGG
ACGAACAGAATCGCTTGCCCCATTTGAATGTGGAGTTCCAGATTAACTAT
TGGCTGCAGAATCATTGTCCTGGCCAAAAATTGAACCTGGGAATAGCCAG
TTATGGCAGAGCATGGAAATTATCGAAGGGATCTGGACTCAGTGGTGCTC
CCATTGTTCATGAGACATGTGGAGTTGCACCCGGCGGAATACAAATCCAG
AGTGCTGAGGGCTTACTAAGTTGGCCAGAGATTTGCTCGAAGTTGTCGCA
GAACGCATCCGCTCAATATAGAGGAGAATTGGCGCCGCTCCGCAAGGTCA
CGGATCTCACCCAGAAATACGGAAATTACGCTCTCCGGCCAGCAGATGAT
AATGGAGATTTTGGCGTATGGCTGAGCTTCGATGATCCGGATTTTGCTGG
AATAAAGGCAGTATATGCCAAGGGCAAAGGACTCGGCGGAATTGCCCTTT
TCGATTTAAGTTACGATGACTTCCGTGGACTTTGCACTGGCCAAAAGTAC
CCCATACTGCGGTCAATTAAGTACTTTATGGGAGCAAGCTTTCTAGACCA
T
BO09868.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf1-RA | 1320 | CG4472-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Idgf2-RB | 1107 | CG4475-PB | 420..560 | 646..786 | 210 | 76.6 | Plus |
Idgf2-RC | 1107 | CG4475-PC | 420..560 | 646..786 | 210 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:21:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf1-RA | 1445 | CG4472-RA | 52..1368 | 17..1333 | 6585 | 100 | Plus |
Idgf2-RB | 1796 | CG4475-RB | 1059..1199 | 646..786 | 210 | 76.6 | Plus |
Idgf2-RC | 1367 | CG4475-RC | 630..770 | 646..786 | 210 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16445329..16445990 | 17..678 | 3310 | 100 | Plus |
2L | 23513712 | 2L | 16446061..16446716 | 678..1333 | 3280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:21:45 has no hits.
BO09868.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:16 Download gff for
BO09868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 1..1320 | 17..1337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:07 Download gff for
BO09868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 50..1376 | 17..1342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:58 Download gff for
BO09868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 52..1368 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:17 Download gff for
BO09868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 50..1376 | 17..1342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:48 Download gff for
BO09868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 52..1368 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:48 Download gff for
BO09868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16445329..16445989 | 17..677 | 100 | -> | Plus |
2L | 16446061..16446716 | 678..1335 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:58 Download gff for
BO09868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16445329..16445989 | 17..677 | 100 | -> | Plus |
arm_2L | 16446061..16446716 | 678..1335 | 99 | | Plus |
BO09868.pep Sequence
Translation from 16 to 1351
> BO09868.pep
MRFQLFYILGLLSVTSLTHAASNLICYYDSNSYLRQGLAKMHTNELDLAL
QFCTHLVYGYAGLKSGTLELFSLNVDLDMFYYKDITALRQKFPQLKILLS
VGGDRDVDEAHPNKYVELLEANRTAQQNFIDSSMILLKRNGFDGLDLAFQ
LPRNKPRKVHGSLGSYWKSFKKLFTGDFVVDPQAEEHKSQFTDLVGNIKN
AFRSANLMLSLTVLPNVNSTWYFDVPKLHPQFDYINLAAFDFLTPLRNPE
EADFTAPIFFQDEQNRLPHLNVEFQINYWLQNHCPGQKLNLGIASYGRAW
KLSKGSGLSGAPIVHETCGVAPGGIQIQSAEGLLSWPEICSKLSQNASAQ
YRGELAPLRKVTDLTQKYGNYALRPADDNGDFGVWLSFDDPDFAGIKAVY
AKGKGLGGIALFDLSYDDFRGLCTGQKYPILRSIKYFMGASFLDH
BO09868.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf1-PA | 439 | CG4472-PA | 1..439 | 1..439 | 2326 | 100 | Plus |
Idgf2-PA | 440 | CG4475-PA | 18..438 | 18..436 | 1338 | 58.5 | Plus |
Idgf3-PD | 441 | CG4559-PD | 23..438 | 20..436 | 1242 | 54.4 | Plus |
Idgf3-PA | 441 | CG4559-PA | 23..438 | 20..436 | 1242 | 54.4 | Plus |
Idgf3-PB | 441 | CG4559-PB | 23..438 | 20..436 | 1242 | 54.4 | Plus |