Clone BO09871 Report

Search the DGRC for BO09871

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptLsp1beta-RA
Protein status:BO09871.pep: validated full length
Sequenced Size:2401

Clone Sequence Records

BO09871.3prime Sequence

958 bp (798 high quality bases) assembled on 2006-04-19

> BO09871.3prime
ATGGTCTAGAAAGCTTGCGAACTTGAAGTACTTGGTGTAGTAATCGTTGA
AGAAGGTGTAGTCGAAGTGGCCGTAGTTGGAGTAGCTCTTGTACTTGTAG
TAGGGCTCCATGGTGTCGGCGTGGTAGATGGACACGTCCTTGAAGTACAT
GTTGGGCACGAAGAACTCGTACTCGTCGATCGCACGGTCGAAGGGATAGC
CGAAGGGCAGGCTGTCCACGTAGCGCGCTCCGGATCCGATACCACAGGAG
TAGGTGTAGTCGAAGGTGGAGAACTGCTCGTGGGCGGGGGCCACGTACGG
CACCACCATGAAGAACATCTGCATGGGCATGCCCTTCTGCCAGCCCATGG
GCAGGACGAGGCGGTCGGGGAATCCGCAGTGGGGCTCGCTGATGTCCAGG
GGGAAGTCGTACTTGCCGTCGAAGGCCATCATCGTGTAGTAGTAGAGCTC
GGTGTAGGTGGTGCGGTCCTTGACGGTCCAGTAGAACTCGCTGGACTTGC
GAGTGATCTTGTTGGTGCCGGCCTTCAGCTCGTAGTAGAACTCGTCGATC
TCCATGAAGTTCATGCGGTTCTCGGCCAGGGAAATGACTTTGCCGAACTC
GTCGAACTTGGGTCCCAGGAAGGCGCGGATGACCACCTTCTCGACCTTCT
CGGACTCGATGGTGTAGGTGTAGGTGAAGGGCTTGTGGTTGAGGCGCATC
TGGCGGGCGAACAGCGACATGTCCCACACGAACTTGCCGTCCTGGAAGAT
CATCTTGTCGTTGAGCATGTTGGTCACATCGAAATCGACCAGGTCGAAGT
AGGTGGTTAGGTCGCTGACCTCCACGTTCTTCATGGTCACGCCGGGCATC
ANGAGCTGCTCCTTGGTGTACTTGGGCAGGTAGTGCATGAACTGGAAGTA
CACCTGGGCGATGGACTTGTAGAACATGTAGTACATCGGGTCGCGCATCA
TGGTCTCG

BO09871.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4178-PA 2370 Lsp1beta-RA 1428..2367 958..19 4681 99.8 Minus
CG2559-PA 2451 Lsp1alpha-RA 2185..2342 282..125 315 87.9 Minus
CG2559-PA 2451 Lsp1alpha-RA 2080..2165 387..302 280 93 Minus
CG2559-PA 2451 Lsp1alpha-RA 1987..2057 480..410 230 92.9 Minus
CG2559-PA 2451 Lsp1alpha-RA 2387..2447 80..20 205 93.4 Minus
CG2559-PA 2451 Lsp1alpha-RA 1540..1610 927..857 205 91.5 Minus
CG2559-PA 2451 Lsp1alpha-RA 1663..1724 804..743 185 91.9 Minus
CG2559-PA 2451 Lsp1alpha-RA 1825..1876 642..591 160 92.3 Minus
CG2559-PA 2451 Lsp1alpha-RA 1777..1811 690..656 150 97.1 Minus
CG6821-PA 2319 Lsp1gamma-RA 1585..1618 783..750 145 97 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
Lsp1beta-RB 2749 CG4178-RB 1660..2599 958..19 4689 99.9 Minus
Lsp1beta-RA 2605 CG4178-RA 1516..2455 958..19 4689 99.9 Minus
Lsp1alpha-RA 2625 CG2559-RA 1601..2539 958..20 2374 83.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 900227..901166 958..19 4689 99.9 Minus
X 23542271 X 12491958..12492896 958..20 2374 83.5 Minus
3L 28110227 3L 68146..68832 801..112 745 74.2 Minus
Blast to na_te.dros performed 2015-02-03 14:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6981..7054 105..32 109 60.8 Minus

BO09871.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:33 Download gff for BO09871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4178-PA 1428..2370 16..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:48 Download gff for BO09871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4178-PA 1428..2370 16..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:16:00 Download gff for BO09871.3prime
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 1516..2460 13..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:44:02 Download gff for BO09871.3prime
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 1516..2460 13..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:44:02 Download gff for BO09871.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 900227..901171 13..958 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:16:00 Download gff for BO09871.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 900227..901171 13..958 99   Minus

BO09871.5prime Sequence

924 bp (884 high quality bases) assembled on 2006-04-19

> BO09871.5prime
GAAGTTATCAGTCGACATGAAGATCGCCATCGCATTGCTGGCCTGCCTGG
GCCTGGCCGCCGCTGCCAGCTTCCACCAGACCCACGAAGTCAAGATCGCC
GACAAGGCCTTCCTGATGAAGCAGAAGTTCCTCTTCGAGATCGTCTACCG
CGTGGAGGATCCGCTGATGTTCGAGGACCACATCAAGCAGGGCGAGAAAT
TCTACTTTGAGGAGTCCTACTACACTCACTACGACATGTACATGAAGAAG
TTCTTCGAGGCCTACAAGGCTCACGCCCTGCTGCCCAAGGGCGAGTTCTT
CGGCGCCCTGGTCATGTCCCACGCCAAGCAGGCCCGCGGTCTGTTCAACT
TCTTCTACTACGCCAAGGACTGGGAGACCTTCGCCGCCAACGTGGCCTGG
GCCCGCATGCACGTGAATGAGGGCATGTTCGTCTACGCCCTGACCATGGC
CGTGATCCACCGCAACGACTTCCATGGACTGATGCTGCCCTCGATCTACG
AGATCTTCCCACAGTTCTTCTTCAACAGCAAGTTTGTGTTCGAAGCGGAG
AAGTTCGACTACGAGATGTGGATGAAGATGACGATGTACGAGAAGGAGTA
CATGGATGTGTACTACAAGACCAACGGATACGACTACTCAACCATGTACC
GGTCCAGCGACTACACCTACATGAAGGACTTCAAGACCTGGCAGTGGTGG
AAACTGATGGGTCTGGGCGAGCACTGGTACACCGAGGACAAGTTCATTCT
GCGCGAGAACATCTACGAGTTCAACCAGGAGACCAAGTGGCTGTCGATGA
TGAAGGACGTGAAGAAGTTCTACATGCCCGTGGACTACACCCGCGACCTG
AACCTCTACNACAAGGAGTCCAAGCTGTCCTACTTCACCGAGGATCTGGG
CTGGAACGCCTACTGGTACTATCT

BO09871.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4178-PA 2370 Lsp1beta-RA 1..908 17..924 4521 99.8 Plus
CG2559-PA 2451 Lsp1alpha-RA 814..986 749..921 496 91.3 Plus
CG2559-PA 2451 Lsp1alpha-RA 62..158 78..174 360 94.8 Plus
CG2559-PA 2451 Lsp1alpha-RA 708..796 643..731 295 93.2 Plus
CG2559-PA 2451 Lsp1alpha-RA 221..296 237..312 230 92.1 Plus
CG6821-PA 2319 Lsp1gamma-RA 306..364 325..383 220 94.9 Plus
CG2559-PA 2451 Lsp1alpha-RA 307..362 323..378 180 92.8 Plus
CG6821-PA 2319 Lsp1gamma-RA 73..125 92..144 165 92.4 Plus
CG2559-PA 2451 Lsp1alpha-RA 403..464 419..480 160 90.3 Plus
CG2559-PA 2451 Lsp1alpha-RA 484..522 500..538 145 94.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Lsp1beta-RB 2749 CG4178-RB 223..1140 7..924 4549 99.7 Plus
Lsp1beta-RA 2605 CG4178-RA 79..996 7..924 4549 99.7 Plus
Lsp1alpha-RA 2625 CG2559-RA 93..696 17..620 1475 83.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 899010..899707 227..924 3479 99.9 Plus
2L 23513712 2L 898722..898941 7..226 1070 99.1 Plus
X 23542271 X 12490660..12491053 227..620 1070 84.8 Plus
X 23542271 X 12491157..12491435 643..921 979 90 Plus
3L 28110227 3L 66799..67167 239..607 780 80.8 Plus
X 23542271 X 12490383..12490540 17..174 445 85.4 Plus
Blast to na_te.dros performed on 2015-02-02 12:23:27 has no hits.

BO09871.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:34 Download gff for BO09871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4178-PA 1..908 17..924 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:49 Download gff for BO09871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4178-PA 1..908 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:58:55 Download gff for BO09871.5prime
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 73..996 1..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:40:10 Download gff for BO09871.5prime
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 73..996 1..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:40:10 Download gff for BO09871.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 898716..898941 1..226 97 -> Plus
2L 899010..899707 227..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:58:55 Download gff for BO09871.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 898716..898941 1..226 97 -> Plus
arm_2L 899010..899707 227..924 99   Plus

BO09871.complete Sequence

2401 bp (2401 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631602

> BO09871.complete
GAAGTTATCAGTCGACATGAAGATCGCCATCGCATTGCTGGCCTGCCTGG
GCCTGGCCGCCGCTGCCAGCTTCCACCAGACCCACGAAGTCAAGATCGCC
GACAAGGCCTTCCTGATGAAGCAGAAGTTCCTCTTCGAGATCGTCTACCG
CGTGGAGGATCCGCTGATGTTCGAGGACCACATCAAGCAGGGCGAGAAAT
TCTACTTTGAGGAGTCCTACTACACTCACTACGACATGTACATGAAGAAG
TTCTTCGAGGCCTACAAGGCTCACGCCCTGCTGCCCAAGGGCGAGTTCTT
CGGCGCCCTGGTCATGTCCCACGCCAAGCAGGCCCGCGGTCTGTTCAACT
TCTTCTACTACGCCAAGGACTGGGAGACCTTCGCCGCCAACGTGGCCTGG
GCCCGCATGCACGTGAATGAGGGCATGTTCGTCTACGCCCTGACCATGGC
CGTGATCCACCGCAACGACTTCCATGGACTGATGCTGCCCTCGATCTACG
AGATCTTCCCACAGTTCTTCTTCAACAGCAAGTTTGTGTTCGAAGCGGAG
AAGTTCGACTACGAGATGTGGATGAAGATGACGATGTACGAGAAGGAGTA
CATGGATGTGTACTACAAGACCAACGGATACGACTACTCAACCATGTACC
GGTCCAGCGACTACACCTACATGAAGGACTTCAAGACCTGGCAGTGGTGG
AAACTGATGGGTCTGGGCGAGCACTGGTACACCGAGGACAAGTTCATTCT
GCGCGAGAACATCTACGAGTTCAACCAGGAGACCAAGTGGCTGTCGATGA
TGAAGGACGTGAAGAAGTTCTACATGCCCGTGGACTACACCCGCGACCTG
AACCTCTACAACAAGGAGTCCAAGCTGTCCTACTTCACCGAGGATCTGGG
CTGGAACGCCTACTGGTACTATCTGAACATGGACTACTCCTTCTTCCTGG
ACGGCAACACCTTCGATCTCAAGAACGACCGTCGCGGCGAGTGGTGGCTC
TACAACGTGCACCAGCTGCTCAGCAGATACTACATGGAGCGCCTGTCGCA
CGGATTCGGCGAGATCCCCGAGTTCTCCTGGTACCAGCAGATCGAGATGG
GCTACGACCCCCAGCTGATCTACTACAACGGCATTGGCTACAGCTTCCGC
AAGAACTACTACGAGATGGAGACCTACGCCAACTACGATATGCTGGACAA
GATCACCGGCTTCCTGAAGCGCATTCACAACATCGTCGAAATGGGCTACT
ACAAGACCGCCGATGGCCACACCATCGATCTGCGCAAACCCGAGGCCATC
GAGTTCATTGGCAACATGCTGCAGGGCAACGTGGACGCCATGGACAAGAT
GTTCTACCAGTTCTGGTACATGCTCGCCCACATGTACTTCGCTGACGCCG
ACTATTACCAGATGGACGTGTACCCCAACGTGATGCTTAACTTCGAGACC
ATGATGCGCGACCCGATGTACTACATGTTCTACAAGTCCATCGCCCAGGT
GTACTTCCAGTTCATGCACTACCTGCCCAAGTACACCAAGGAGCAGCTCC
TGATGCCCGGCGTGACCATGAAGAACGTGGAGGTCAGCGACCTAACCACC
TACTTCGACCTGGTCGATTTCGATGTGACCAACATGCTCAACGACAAGAT
GATCTTCCAGGACGGCAAGTTCGTGTGGGACATGTCGCTGTTCGCCCGCC
AGATGCGCCTCAACCACAAGCCCTTCACCTACACCTACACCATCGAGTCC
GAGAAGGTCGAGAAGGTGGTCATCCGCGCCTTCCTGGGACCCAAGTTCGA
CGAGTTCGGCAAAGTCATTTCCCTGGCCGAGAACCGCATGAACTTCATGG
AGATCGACGAGTTCTACTACGAGCTGAAGGCCGGCACCAACAAGATCACT
CGCAAGTCCAGCGAGTTCTACTGGACCGTCAAGGACCGCACCACCTACAC
CGAGCTCTACTACTACACGATGATGGCCTTCGACGGCAAGTACGACTTCC
CCCTGGACATCAGCGAGCCCCACTGCGGATTCCCCGACCGCCTCGTCCTG
CCCATGGGCTGGCAGAAGGGCATGCCCATGCAGATGTTCTTCATGGTGGT
GCCGTACGTGGCCCCCGCCCACGAGCAGTTCTCCACCTTCGACTACACCT
ACTCCTGTGGTATCGGATCCGGAGCGCGCTACGTGGACAGCCTGCCCTTC
GGCTATCCCTTCGACCGTGCGATCGACGAGTACGAGTTCTTCGTGCCCAA
CATGTACTTCAAGGACGTGTCCATCTACCACGCCGACACCATGGAGCCCT
ACTACAAGTACAAGAGCTACTCCAACTACGGCCACTTCGACTACACCTTC
TTCAACGATTACTACACCAAGTACTTCAAGTTCGCAAGCTTTCTAGACCA
T

BO09871.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Lsp1beta-RB 2370 CG4178-PB 1..2367 17..2383 11835 100 Plus
Lsp1beta-RA 2370 CG4178-PA 1..2367 17..2383 11835 100 Plus
Lsp1alpha-RA 2451 CG2559-PA 708..2447 643..2382 4770 84.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
Lsp1beta-RB 2749 CG4178-RB 223..2599 7..2383 11855 99.9 Plus
Lsp1beta-RA 2605 CG4178-RA 79..2455 7..2383 11855 99.9 Plus
Lsp1alpha-RA 2625 CG2559-RA 800..2539 643..2382 4770 84.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 899010..901166 227..2383 10785 100 Plus
X 23542271 X 12491157..12492896 643..2382 4770 84.9 Plus
3L 28110227 3L 67212..68832 667..2290 1260 72 Plus
2L 23513712 2L 898722..898941 7..226 1070 99.1 Plus
X 23542271 X 12490660..12491053 227..620 1070 84.8 Plus
3L 28110227 3L 66799..67167 239..607 780 80.8 Plus
X 23542271 X 12490383..12490540 17..174 445 85.4 Plus
3L 28110227 3L 66587..66672 92..177 235 84.9 Plus
Blast to na_te.dros performed on 2014-11-27 13:25:34 has no hits.

BO09871.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:40 Download gff for BO09871.complete
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 1..2370 17..2386 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:23 Download gff for BO09871.complete
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 70..2457 1..2389 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:40:58 Download gff for BO09871.complete
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 89..2455 17..2385 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:40 Download gff for BO09871.complete
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 70..2457 1..2389 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:11 Download gff for BO09871.complete
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 89..2455 17..2385 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:11 Download gff for BO09871.complete
Subject Subject Range Query Range Percent Splice Strand
2L 898732..898941 17..226 100 -> Plus
2L 899010..901166 227..2385 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:40:58 Download gff for BO09871.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 898732..898941 17..226 100 -> Plus
arm_2L 899010..901166 227..2385 99   Plus

BO09871.pep Sequence

Translation from 16 to 2401

> BO09871.pep
MKIAIALLACLGLAAAASFHQTHEVKIADKAFLMKQKFLFEIVYRVEDPL
MFEDHIKQGEKFYFEESYYTHYDMYMKKFFEAYKAHALLPKGEFFGALVM
SHAKQARGLFNFFYYAKDWETFAANVAWARMHVNEGMFVYALTMAVIHRN
DFHGLMLPSIYEIFPQFFFNSKFVFEAEKFDYEMWMKMTMYEKEYMDVYY
KTNGYDYSTMYRSSDYTYMKDFKTWQWWKLMGLGEHWYTEDKFILRENIY
EFNQETKWLSMMKDVKKFYMPVDYTRDLNLYNKESKLSYFTEDLGWNAYW
YYLNMDYSFFLDGNTFDLKNDRRGEWWLYNVHQLLSRYYMERLSHGFGEI
PEFSWYQQIEMGYDPQLIYYNGIGYSFRKNYYEMETYANYDMLDKITGFL
KRIHNIVEMGYYKTADGHTIDLRKPEAIEFIGNMLQGNVDAMDKMFYQFW
YMLAHMYFADADYYQMDVYPNVMLNFETMMRDPMYYMFYKSIAQVYFQFM
HYLPKYTKEQLLMPGVTMKNVEVSDLTTYFDLVDFDVTNMLNDKMIFQDG
KFVWDMSLFARQMRLNHKPFTYTYTIESEKVEKVVIRAFLGPKFDEFGKV
ISLAENRMNFMEIDEFYYELKAGTNKITRKSSEFYWTVKDRTTYTELYYY
TMMAFDGKYDFPLDISEPHCGFPDRLVLPMGWQKGMPMQMFFMVVPYVAP
AHEQFSTFDYTYSCGIGSGARYVDSLPFGYPFDRAIDEYEFFVPNMYFKD
VSIYHADTMEPYYKYKSYSNYGHFDYTFFNDYYTKYFKFASFLDH

BO09871.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
Lsp1beta-PB 789 CG4178-PB 1..789 1..789 4346 100 Plus
Lsp1beta-PA 789 CG4178-PA 1..789 1..789 4346 100 Plus
Lsp1alpha-PA 816 CG2559-PA 1..815 1..788 3670 79.3 Plus
Lsp1gamma-PA 772 CG6821-PA 1..769 1..777 2755 62.4 Plus
Lsp2-PB 701 CG6806-PB 11..695 4..757 928 30.7 Plus