Clone Sequence Records
BO09875.3prime Sequence
930 bp (792 high quality bases) assembled on 2006-04-19
> BO09875.3prime
ATGGTCTAGAAAGCTTGCGTTAACACCCCCCATCAAGTTAACCACCCGGT
TCTTGTACCGCTTGGATATATCCTTCTCGATGTGAGACTGCAGCGTGCGA
GTCTGAGCAATCAGCTCCTCCAGCACGGGATTCAGGTCCTGCCGCTGCTC
CCGCAGCTCGATGGTCAACTGCTTGAGCGCCTCTCGCGTGGCGCGCAGCT
TCTCCACGGCCTTTGTCATTTGCTGCAGCTTGGTGGCCAGCATATTGGCA
TACTTTGGGGAGTGCTTCAGCTGGAAGAGGTGCTGCGTCTGCTTGTCGGA
TGTCTGCTGGATTATTTTCTCCACGGACACGAGTATCTTCCAGATGCTCT
CACCGTCGTGGGTGGCAATGTTGTCCATCAGCGAGAACATGATGTCGCTG
GAGGATTCAAGCTGCTTGAGCTCGTAGATACGCATGCGTAGAAAGGATTC
CAGTTCGTAGATTTCGTCCAGGAAGCGATCGCGATAGTTGGGTGAGTCCA
GCAAAGTGTAGGCCTGATCGCCCTTGGCAGTGCCGCCATCCATGCCGGTG
CCCTCCACCACGATGCCGTACTCCTCGACGGGAATGTCAAAATTGATTTC
CACCGCATCGGTGGGTGCACTCTCAATGCCCCAGTCGATGTTGCCGCCGT
CGCTTTCCGGCAAATCCCCGCTGCCGAAGTCCCCGTAGTCGATAATCTCA
GCCGAAACGGTCGACGAAGTTCCGCCGTTGTCATCCGTTCCGAAGTCAAT
CTCGGCCACAGCATTGTCATCCTTGCTGGCGTTGCCCTCGCTGAGATTTA
GCCGAATGGGCGGCTCCTCGACGGCCAAGGGTGCTTCCTTGTGGATGTAC
TGGTACACGGTGGTGTTGCCAAACTCCACCAGGTGGTTCAGGATAGGCAG
CACTTGCTTGTTTGCGCTGACCTCCGCATA
BO09875.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30291-PA | 1530 | CG30291-RA | 616..1527 | 930..19 | 4510 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30291-RA | 1655 | CG30291-RA | 694..1605 | 930..19 | 4530 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21007805..21008308 | 19..522 | 2520 | 100 | Plus |
| 2R | 25286936 | 2R | 21008361..21008770 | 521..930 | 2020 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:49:55 has no hits.
BO09875.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:40 Download gff for
BO09875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30291-PA | 617..1530 | 15..929 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:00 Download gff for
BO09875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30291-PA | 617..1530 | 15..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:14:12 Download gff for
BO09875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30291-RA | 695..1608 | 15..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:35 Download gff for
BO09875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30291-RA | 695..1608 | 15..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:35 Download gff for
BO09875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21007802..21008307 | 15..521 | 99 | <- | Plus |
| 2R | 21008362..21008769 | 522..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:14:12 Download gff for
BO09875.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16895307..16895812 | 15..521 | 99 | <- | Plus |
| arm_2R | 16895867..16896274 | 522..929 | 99 | | Plus |
BO09875.5prime Sequence
838 bp (824 high quality bases) assembled on 2006-04-19
> BO09875.5prime
GAAGTTATCAGTCGACATGAATGAGTCCGAGATCCCCATCGACATACACA
CGCTGAAGCTGCAGGACTGGCTGATCAGCCGCAGAATTGTGCCCAAGAAT
GTGCAGCAGGAGCTTAGGGAGATCCACAGGAAGATTAGCAACGCCCTGCA
GGACATGCCCTCCAATGAGCAGCTGATCAAGCTGTTGGCCCGGACAAATA
TCAACTACTACCATGTGAAGGAGATCATTGAGATCCTCAAGCAGACGGAG
AAGGACACCAAGAGCGTGTTCGGCACCTACGGCAGCCAGCGCATGAAGGA
CTGGCAAGAGATTAGCCGCCTGTACGAAAAGAATGCCACCTACCTGGCCG
AAACGGCTCAGATTTTCGTGCGCAATGTGAACTACGAGATTCCCGGAGTG
CGAAAGCAGATGGCCAGGCTGGAGCAGCAGGCGGACGAGACCCAGAAGCG
AGCGCACGATCTGAACAAGCCCGAGAGCCAAATCCTGGCCGACCACTCGG
CTTTGCTGGAGCAACTGGGCGTCAAGGGCGACAATCTGCATGCCGAGTTC
GTCCAGGTTCTATCTGGTCTACCGGAACTATACGATAAGTCGCTGGTGGG
CATTGCCAATATTCAGCCGGGCATCGACCTGTATGCGGAGGTCAGCGGCA
ACAAGCAAGTGCTGCCTATCCTGAACCACCTGGTGGAGTTTGGCAACACC
ACCGTGTACCAGTACATCCACAAGGAAGCACCCTTGGCCGTCGAGGAGCC
GCCCATTCGGCTAAATCTCAGCGAGGGCAACGCCAGCAAGGATGACAATG
CTGTGGCCGAGATTGACTTCGGAACGGAATGACACGGC
BO09875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30291-PA | 1530 | CG30291-RA | 1..812 | 17..828 | 4060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30291-RA | 1655 | CG30291-RA | 79..895 | 17..834 | 4065 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21008574..21009204 | 828..198 | 3155 | 100 | Minus |
| 2R | 25286936 | 2R | 21009256..21009430 | 197..23 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:10:59 has no hits.
BO09875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:41 Download gff for
BO09875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30291-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:02 Download gff for
BO09875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30291-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:41:41 Download gff for
BO09875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30291-RA | 79..900 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:45:21 Download gff for
BO09875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30291-RA | 79..900 | 17..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:45:21 Download gff for
BO09875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21008564..21009204 | 198..838 | 99 | <- | Minus |
| 2R | 21009256..21009430 | 23..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:41:41 Download gff for
BO09875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16896069..16896709 | 198..838 | 99 | <- | Minus |
| arm_2R | 16896761..16896935 | 23..197 | 100 | | Minus |
BO09875.complete Sequence
1561 bp (1561 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631603
> BO09875.complete
GAAGTTATCAGTCGACATGAATGAGTCCGAGATCCCCATCGACATACACA
CGCTGAAGCTGCAGGACTGGCTGATCAGCCGCAGAATTGTGCCCAAGAAT
GTGCAGCAGGAGCTTAGGGAGATCCACAGGAAGATTAGCAACGCCCTGCA
GGACATGCCCTCCAATGAGCAGCTGATCAAGCTGTTGGCCCGGACAAATA
TCAACTACTACCATGTGAAGGAGATCATTGAGATCCTCAAGCAGACGGAG
AAGGACACCAAGAGCGTGTTCGGCACCTACGGCAGCCAGCGCATGAAGGA
CTGGCAAGAGATTAGCCGCCTGTACGAAAAGAATGCCACCTACCTGGCCG
AAACGGCTCAGATTTTCGTGCGCAATGTGAACTACGAGATTCCCGGAGTG
CGAAAGCAGATGGCCAGGCTGGAGCAGCAGGCGGACGAGACCCAGAAGCG
AGCGCACGATCTGAACAAGCCCGAGAGCCAAATCCTGGCCGACCACTCGG
CTTTGCTGGAGCAACTGGGCGTCAAGGGCGACAATCTGCATGCCGAGTTC
GTCCAGGTTCTATCTGGTCTACCGGAACTATACGATAAGTCGCTGGTGGG
CATTGCCAATATTCAGCCGGGCATCGACCTGTATGCGGAGGTCAGCGGCA
ACAAGCAAGTGCTGCCTATCCTGAACCACCTGGTGGAGTTTGGCAACACC
ACCGTGTACCAGTACATCCACAAGGAAGCACCCTTGGCCGTCGAGGAGCC
GCCCATTCGGCTAAATCTCAGCGAGGGCAACGCCAGCAAGGATGACAATG
CTGTGGCCGAGATTGACTTCGGAACGGATGACAACGGCGGAACTTCGTCG
ACCGTTTCGGCTGAGATTATCGACTACGGGGACTTCGGCAGCGGGGATTT
GCCGGAAAGCGACGGCGGCAACATCGACTGGGGCATTGAGAGTGCACCCA
CCGATGCGGTGGAAATCAATTTTGACATTCCCGTCGAGGAGTACGGCATC
GTGGTGGAGGGCACCGGCATGGATGGCGGCACTGCCAAGGGCGATCAGGC
CTACACTTTGCTGGACTCACCCAACTATCGCGATCGCTTCCTGGACGAAA
TCTACGAACTGGAATCCTTTCTACGCATGCGTATCTACGAGCTCAAGCAG
CTTGAATCCTCCAGCGACATCATGTTCTCGCTGATGGACAACATTGCCAC
CCACGACGGTGAGAGCATCTGGAAGATACTCGTGTCCGTGGAGAAAATAA
TCCAGCAGACATCCGACAAGCAGACGCAGCACCTCTTCCAGCTGAAGCAC
TCCCCAAAGTATGCCAATATGCTGGCCACCAAGCTGCAGCAAATGACAAA
GGCCGTGGAGAAGCTGCGCGCCACGCGAGAGGCGCTCAAGCAGTTGACCA
TCGAGCTGCGGGAGCAGCGGCAGGACCTGAATCCCGTGCTGGAGGAGCTG
ATTGCTCAGACTCGCACGCTGCAGTCTCACATCGAGAAGGATATATCCAA
GCGGTACAAGAACCGGGTGGTTAACTTGATGGGGGGTGTTAACGCAAGCT
TTCTAGACCAT
BO09875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30291-RA | 1530 | CG30291-PA | 1..1527 | 17..1543 | 7635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30291-RA | 1655 | CG30291-RA | 79..1605 | 17..1543 | 7635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21008361..21009204 | 1041..198 | 4220 | 100 | Minus |
| 2R | 25286936 | 2R | 21007805..21008308 | 1543..1040 | 2520 | 100 | Minus |
| 2R | 25286936 | 2R | 21009256..21009430 | 197..23 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:28:56 has no hits.
BO09875.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:18 Download gff for
BO09875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30291-RA | 1..1530 | 17..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:09 Download gff for
BO09875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30291-RA | 76..1605 | 17..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:00 Download gff for
BO09875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30291-RA | 79..1605 | 17..1545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:18 Download gff for
BO09875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30291-RA | 76..1605 | 17..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:26 Download gff for
BO09875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30291-RA | 79..1605 | 17..1545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:26 Download gff for
BO09875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21007803..21008307 | 1041..1545 | 99 | <- | Minus |
| 2R | 21008362..21009204 | 198..1040 | 100 | <- | Minus |
| 2R | 21009256..21009435 | 17..197 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:00 Download gff for
BO09875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16895308..16895812 | 1041..1545 | 99 | <- | Minus |
| arm_2R | 16895867..16896709 | 198..1040 | 100 | <- | Minus |
| arm_2R | 16896761..16896940 | 17..197 | 98 | | Minus |
BO09875.pep Sequence
Translation from 16 to 1561
> BO09875.pep
MNESEIPIDIHTLKLQDWLISRRIVPKNVQQELREIHRKISNALQDMPSN
EQLIKLLARTNINYYHVKEIIEILKQTEKDTKSVFGTYGSQRMKDWQEIS
RLYEKNATYLAETAQIFVRNVNYEIPGVRKQMARLEQQADETQKRAHDLN
KPESQILADHSALLEQLGVKGDNLHAEFVQVLSGLPELYDKSLVGIANIQ
PGIDLYAEVSGNKQVLPILNHLVEFGNTTVYQYIHKEAPLAVEEPPIRLN
LSEGNASKDDNAVAEIDFGTDDNGGTSSTVSAEIIDYGDFGSGDLPESDG
GNIDWGIESAPTDAVEINFDIPVEEYGIVVEGTGMDGGTAKGDQAYTLLD
SPNYRDRFLDEIYELESFLRMRIYELKQLESSSDIMFSLMDNIATHDGES
IWKILVSVEKIIQQTSDKQTQHLFQLKHSPKYANMLATKLQQMTKAVEKL
RATREALKQLTIELREQRQDLNPVLEELIAQTRTLQSHIEKDISKRYKNR
VVNLMGGVNASFLDH
BO09875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30291-PA | 509 | CG30291-PA | 1..509 | 1..509 | 2592 | 100 | Plus |
