Clone Sequence Records
BO09881.3prime Sequence
919 bp (886 high quality bases) assembled on 2006-04-19
> BO09881.3prime
ATGGTCTAGAAAGCTTGCAAACTTATTGATTCTTCCCGCAAACAAAATAG
TAGAATCCTTATTGATAATGTAATAGTTAAATGGATGCTGGACATGGAAT
TGGACGGGCTGCGGTTCGAACGTGAGCATGGAGGCGTAGCACATGACCAT
TCCCGTGGCGGCCGCAGCCTCCGTTCCCTCCTCGTTGACTTCAATGAAGG
CCTTGTGTATGATGGCTGACACTTTCAATGGCTCCGGACTTTGTAGCATT
TTTCCAAATTCAGCCTGATCGGAGAACATCCTTGACATGCCCAGCTTCTG
GAAAACCTCAGACAATTCCACTTGGAACTCTGCCTTGAACCTGGGCAATT
TGAGCGCTACCTTTGTTTCGTACAACGACTGCGTGATCTGCGAGAGGGTC
GTGAGGCGCAACTTCTCCTCCAGAGCGGGCAGACCCGTCTTGGTGTTGGG
CAGTACGATCAGCATAGAGAGGTCTGAGTCCTTGTAGGGCAGTTCCAGAG
CCATGGCATCTAGCGCCGGCAGATCGGCGTAGCGGAACCGCTCCTTTAAA
CTCATCATCGGAACCTGAACTGTTCGCTCCCCATCCAGGTGAAAGGTGTC
TGGGCGGGTTAAGTGTTTGGCGAACTGGTGCTGCCAGGTGCCCTTGAAGT
GAATGGCGTTCACAAGGACGAGTCGCGATTCGGAGTTCAATACATCAGCC
GGCACAAGGTCCTTGATCAGATGGTTGGTGCGCTGCTCAACCCAATTGTT
GATGGTGGCCGCTGCTTGTACATTTTTGGAAAAGTCCACGCTCTGAGCCG
CCGAGAGGAACTGCTTGGATAACAGCTGATCAAACTCCTGGCGCAGCTGG
TAGCCATCCATGACGAAAATCTTGTTGGCGATGCGCAAGATCTGACTGTC
CTGGTAGGCGGCCAGCACC
BO09881.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9453-PC | 1257 | Spn4-RC | 354..1254 | 919..19 | 4505 | 100 | Minus |
| CG9453-PE | 1236 | Spn4-RE | 333..1233 | 919..19 | 4505 | 100 | Minus |
| CG9453-PF | 1236 | Spn4-RF | 333..1233 | 919..19 | 4505 | 100 | Minus |
| CG9453-PH | 1140 | Spn4-RH | 237..1137 | 919..19 | 4505 | 100 | Minus |
| CG9453-PK | 1140 | Spn4-RK | 237..1137 | 919..19 | 4505 | 100 | Minus |
| CG9453-PB | 1275 | Spn4-RB | 333..1100 | 919..152 | 3840 | 100 | Minus |
| CG9453-PA | 1179 | Spn4-RA | 237..1004 | 919..152 | 3840 | 100 | Minus |
| CG9453-PD | 1236 | Spn4-RD | 333..1100 | 919..152 | 3840 | 100 | Minus |
| CG9453-PG | 1140 | Spn4-RG | 237..1004 | 919..152 | 3840 | 100 | Minus |
| CG9453-PI | 1221 | Spn4-RI | 333..1099 | 919..153 | 3835 | 100 | Minus |
| CG9453-PJ | 1125 | Spn4-RJ | 237..1003 | 919..153 | 3835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RL | 2155 | CG9453-RL | 877..1777 | 919..19 | 4505 | 100 | Minus |
| Spn42Da-RK | 1789 | CG9453-RK | 511..1411 | 919..19 | 4505 | 100 | Minus |
| Spn42Da-RH | 1763 | CG9453-RH | 511..1411 | 919..19 | 4505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877427..6878051 | 295..919 | 3125 | 100 | Plus |
| 2R | 25286936 | 2R | 6877220..6877364 | 152..296 | 725 | 100 | Plus |
| 2R | 25286936 | 2R | 6876600..6876734 | 19..153 | 675 | 100 | Plus |
Blast to na_te.dros performed 2015-01-31 15:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 3903..3966 | 66..1 | 118 | 66.7 | Minus |
BO09881.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:50 Download gff for
BO09881.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-PE | 333..1236 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:14 Download gff for
BO09881.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9453-PF | 333..1236 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:41 Download gff for
BO09881.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RH | 511..1418 | 11..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:43:54 Download gff for
BO09881.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RH | 511..1418 | 11..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:43:54 Download gff for
BO09881.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6877221..6877362 | 153..294 | 100 | <- | Plus |
| 2R | 6876593..6876733 | 11..152 | 97 | <- | Plus |
| 2R | 6877427..6878051 | 295..919 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:41 Download gff for
BO09881.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2764098..2764238 | 11..152 | 97 | <- | Plus |
| arm_2R | 2764726..2764867 | 153..294 | 100 | <- | Plus |
| arm_2R | 2764932..2765556 | 295..919 | 100 | | Plus |
BO09881.5prime Sequence
922 bp (866 high quality bases) assembled on 2006-04-19
> BO09881.5prime
GAAGTTATCAGTCGTCATGAAAACGAGCACACCTCATCCACGGTCGATTT
GGATACTTACAGGTTGCTGGTTGCTCCCCCTGCTCGGCCTAGCCCTCTTC
CCGTTTCCACCGGTCCACACGGCTGACGTCACCATGGCTGACGCCGCCCA
CCAGGAGTTCGCCCGCCGGCTGGCCCTTTTCTCTATCAACGTGTACGGCA
AGCTGTCGGGGCAGAAGCCCGGCGAGAACATCGTCTTCTCGCCCTTTTCC
ATCCAGACTTGTGCGGCGATGGCCAGGCTGGGTGCAGAAAACGAGACGGC
TACCCAGCTGGACCAGGGACTGGGCTTGGCCTCTAGTGACCCAGAGCAAA
TCGCACACAGTTTTCACCAGGTGCTGGCCGCCTACCAGGACAGTCAGATC
TTGCGCATCGCCAACAAGATTTTCGTCATGGATGGCTACCAGCTGCGCCA
GGAGTTTGATCAGCTGTTATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCG
TGGACTTTTCCAAAAATGTACAAGCAGCGGCCACCATCAACAATTGGGTT
GAGCAGCGCACCAACCATCTGATCAAGGACCTTGTGCCGGCTGATGTATT
GAACTCCGAATCGCGACTCGTCCTTGTGAACGCCATTCACTTCAAGGGCA
CCTGGCAGCACCAGTTCGCCAAACACTTAACCCGCCCAGACACCTTTCAC
CTGGATGGGGAGCGAACAGTTCAGGTTCCGATGATGAGTTTAAAGGAGCG
GTTCCGCTACGCCGATCTGCCGGCGCTAGATGCCATGGCTCTGGAACTGC
CCTACAAGGACTCAGACCTCTCTATGCTGATCGTACTGCCCAACACCAAG
ACGGGTCTGCCCGCTCTGGAGGAGAAGTTGCGCCTCACGACCCTCTCGCA
GATCACGCAGTCGTTGTACGAA
BO09881.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9453-PC | 1257 | Spn4-RC | 1..906 | 17..922 | 4530 | 100 | Plus |
| CG9453-PB | 1275 | Spn4-RB | 25..885 | 62..922 | 4305 | 100 | Plus |
| CG9453-PD | 1236 | Spn4-RD | 25..885 | 62..922 | 4305 | 100 | Plus |
| CG9453-PE | 1236 | Spn4-RE | 25..885 | 62..922 | 4305 | 100 | Plus |
| CG9453-PF | 1236 | Spn4-RF | 25..885 | 62..922 | 4305 | 100 | Plus |
| CG9453-PI | 1221 | Spn4-RI | 25..885 | 62..922 | 4305 | 100 | Plus |
| CG9453-PA | 1179 | Spn4-RA | 1..789 | 134..922 | 3945 | 100 | Plus |
| CG9453-PG | 1140 | Spn4-RG | 1..789 | 134..922 | 3945 | 100 | Plus |
| CG9453-PH | 1140 | Spn4-RH | 1..789 | 134..922 | 3945 | 100 | Plus |
| CG9453-PJ | 1125 | Spn4-RJ | 1..789 | 134..922 | 3945 | 100 | Plus |
| CG9453-PK | 1140 | Spn4-RK | 1..789 | 134..922 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:15:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RL | 2155 | CG9453-RL | 524..1429 | 17..922 | 4530 | 100 | Plus |
| Spn42Da-RK | 1789 | CG9453-RK | 202..1063 | 61..922 | 4310 | 100 | Plus |
| Spn42Da-RJ | 1490 | CG9453-RJ | 202..1063 | 61..922 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877499..6878404 | 922..17 | 4530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:15:15 has no hits.
BO09881.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:51 Download gff for
BO09881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-PC | 1..904 | 17..920 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:16 Download gff for
BO09881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9453-PC | 1..904 | 17..920 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:35:27 Download gff for
BO09881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RL | 524..1429 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:28 Download gff for
BO09881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RL | 524..1429 | 17..922 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:28 Download gff for
BO09881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6877499..6878404 | 17..922 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:35:27 Download gff for
BO09881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2765004..2765909 | 17..922 | 100 | | Minus |
BO09881.complete Sequence
1288 bp assembled on 2008-08-15
GenBank Submission: FJ631604
> BO09881.complete
GAAGTTATCAGTCGTCATGAAAACGAGCACACCTCATCCACGGTCGATTT
GGATACTTACAGGTTGCTGGTTGCTCCCCCTGCTCGGCCTAGCCCTCTTC
CCGTTTCCACCGGTCCACACGGCTGACGTCACCATGGCTGACGCCGCCCA
CCAGGAGTTCGCCCGCCGGCTGGCCCTTTTCTCTATCAACGTGTACGGCA
AGCTGTCGGGGCAGAAGCCCGGCGAGAACATCGTCTTCTCGCCCTTTTCC
ATCCAGACTTGTGCGGCGATGGCCAGGCTGGGTGCAGAAAACGAGACGGC
TACCCAGCTGGACCAGGGACTGGGCTTGGCCTCTAGTGACCCAGAGCAAA
TCGCACACAGTTTTCACCAGGTGCTGGCCGCCTACCAGGACAGTCAGATC
TTGCGCATCGCCAACAAGATTTTCGTCATGGATGGCTACCAGCTGCGCCA
GGAGTTTGATCAGCTGTTATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCG
TGGACTTTTCCAAAAATGTACAAGCAGCGGCCACCATCAACAATTGGGTT
GAGCAGCGCACCAACCATCTGATCAAGGACCTTGTGCCGGCTGATGTATT
GAACTCCGAATCGCGACTCGTCCTTGTGAACGCCATTCACTTCAAGGGCA
CCTGGCAGCACCAGTTCGCCAAACACTTAACCCGCCCAGACACCTTTCAC
CTGGATGGGGAGCGAACAGTTCAGGTTCCGATGATGAGTTTAAAGGAGCG
GTTCCGCTACGCCGATCTGCCGGCGCTAGATGCCATGGCTCTGGAACTGC
CCTACAAGGACTCAGACCTCTCTATGCTGATCGTACTGCCCAACACCAAG
ACGGGTCTGCCCGCTCTGGAGGAGAAGTTGCGCCTCACGACCCTCTCGCA
GATCACGCAGTCGTTGTACGAAACAAAGGTAGCGCTCAAATTGCCCAGGT
TCAAGGCAGAGTTCCAAGTGGAATTGTCTGAGGTTTTCCAGAAGCTGGGC
ATGTCAAGGATGTTCTCCGATCAGGCTGAATTTGGAAAAATGCTACAAAG
TCCGGAGCCATTGAAAGTGTCAGCCATCATACACAAGGCCTTCATTGAAG
TCAACGAGGAGGGAACGGAGGCTGCGGCCGCCACGGGAATGGTCATGTGC
TACGCCTCCATGCTCACGTTCGAACCGCAGCCCGTCCAATTCCATGTCCA
GCATCCATTTAACTATTACATTATCAATAAGGATTCTACTATTTTGTTTG
CGGGAAGAATCAATAAGTTTGCAAGCTTTCTAGACCAT
BO09881.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RF | 1236 | CG9453-PF | 25..1233 | 62..1270 | 6045 | 100 | Plus |
| Spn42Da-RE | 1236 | CG9453-PE | 25..1233 | 62..1270 | 6045 | 100 | Plus |
| Spn42Da-RL | 1140 | CG9453-PL | 1..1137 | 134..1270 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:40:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RL | 2155 | CG9453-RL | 524..1777 | 17..1270 | 6270 | 100 | Plus |
| Spn42Da-RK | 1789 | CG9453-RK | 202..1411 | 61..1270 | 6050 | 100 | Plus |
| Spn42Da-RH | 1763 | CG9453-RH | 202..1411 | 61..1270 | 6050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877427..6878404 | 994..17 | 4890 | 100 | Minus |
| 2R | 25286936 | 2R | 6877220..6877364 | 1137..993 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 6876600..6876734 | 1270..1136 | 675 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 3903..3966 | 1223..1288 | 118 | 66.7 | Plus |
BO09881.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:44 Download gff for
BO09881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-RL | 520..1778 | 17..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:03 Download gff for
BO09881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RL | 524..1777 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:52 Download gff for
BO09881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-RC | 520..1773 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:22 Download gff for
BO09881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RL | 524..1777 | 17..1272 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:22 Download gff for
BO09881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6876597..6876733 | 1137..1272 | 98 | <- | Minus |
| 2R | 6877221..6877362 | 995..1136 | 100 | <- | Minus |
| 2R | 6877427..6878404 | 17..994 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:03 Download gff for
BO09881.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2764102..2764238 | 1137..1272 | 98 | <- | Minus |
| arm_2R | 2764726..2764867 | 995..1136 | 100 | <- | Minus |
| arm_2R | 2764932..2765909 | 17..994 | 100 | | Minus |
BO09881.pep Sequence
Translation from 16 to 1288
> BO09881.pep
MKTSTPHPRSIWILTGCWLLPLLGLALFPFPPVHTADVTMADAAHQEFAR
RLALFSINVYGKLSGQKPGENIVFSPFSIQTCAAMARLGAENETATQLDQ
GLGLASSDPEQIAHSFHQVLAAYQDSQILRIANKIFVMDGYQLRQEFDQL
LSKQFLSAAQSVDFSKNVQAAATINNWVEQRTNHLIKDLVPADVLNSESR
LVLVNAIHFKGTWQHQFAKHLTRPDTFHLDGERTVQVPMMSLKERFRYAD
LPALDAMALELPYKDSDLSMLIVLPNTKTGLPALEEKLRLTTLSQITQSL
YETKVALKLPRFKAEFQVELSEVFQKLGMSRMFSDQAEFGKMLQSPEPLK
VSAIIHKAFIEVNEEGTEAAAATGMVMCYASMLTFEPQPVQFHVQHPFNY
YIINKDSTILFAGRINKFASFLDH
BO09881.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-PF | 411 | CG9453-PF | 9..411 | 16..418 | 2057 | 100 | Plus |
| Spn42Da-PE | 411 | CG9453-PE | 9..411 | 16..418 | 2057 | 100 | Plus |
| Spn42Da-PD | 411 | CG9453-PD | 9..410 | 16..417 | 1943 | 95 | Plus |
| Spn42Da-PL | 379 | CG9453-PL | 1..379 | 40..418 | 1921 | 100 | Plus |
| Spn42Da-PK | 379 | CG9453-PK | 1..379 | 40..418 | 1921 | 100 | Plus |
