Clone Sequence Records
BO09883.3prime Sequence
926 bp (797 high quality bases) assembled on 2006-04-19
> BO09883.3prime
ATGGTCTAGAAAGCTTGCATTGCGTTCAACAAAATCCAGCCAAACGCCGC
CTTTTAAGGCTGGCATAAAGTAGGTATCATCAATTTCATTATCCTTGCGA
GTTTTGGGATTAACCTTGATGTCGAAGTTTCGCACGATTTCCACCAGGGC
AGCTTTGATTTGGGTAAGTGAAAACCGCATACCGGGGCAAATACGTGGTC
CATCGCCAAACCCAAAGAATAGACCCTGATCTCTGTACTTTTTGGCTCCG
CCATTGATGTTCAGGAATCGCTCGGGCTTGAACGATTGAGGTTCCTCATA
GTATTGGGGATCGTGGTGCAAGGCGTTCACAGGAATGATGACTACATCCC
CGGGTCTCAGTTTCACGCTCACTCCGTTTTTGTTCGTCAGTTCACAGGGC
TCAGTTACCACCTTGCGGGCAGCCAGAACAGGTGAGAAAATTCTCAAAGT
TTCATGGATGCAGGCTTCGGTGAAGGGCAGCTCACTTATCTGTTCAAAGG
TCAGCTCGGCGGTACCGATCTCCTCCCTCAACTTCATCTGCTCCTTGGGA
TTGCGTGCCAGGAAAAGGAGTGTGTGGGTAAGCACTTGTGCGGTGGTCTC
GAATCCGTCCGTTAAAAATGTCATTGTGTGCGAGGTCAGCTCCGCCGCAT
TCAGTCCCTTTTTCTCCTGCAACTGCAACATGTAGTTGAGGAAGTCATCT
CGCTGCTGTGCCGCCGGACTTTCCCGCCGAACTTGGATGCACTTCTGCAT
GAGGTCATAGAAGAACGCAGCCACGTCCTTGGCGAACAGCGAAACGGAGT
AGAATTTCGTGATTGGTGGCCATAGATTGGCGACCACCGTGTAGAAAATG
AAGCCAAAAGACTGTTCGAAGACGCGCTTGGTCATTCCCACCATGGGTGT
GGGGATATCCGTGAAACTCTGGGCGG
BO09883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10833-PA | 1509 | Cyp28d1-RA | 599..1506 | 926..19 | 4490 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp28d1-RA | 1617 | CG10833-RA | 641..1548 | 926..19 | 4510 | 99.8 | Minus |
| Cyp28d2-RA | 1673 | CG6081-RA | 1098..1502 | 465..64 | 340 | 72.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5211348..5211821 | 926..453 | 2340 | 99.6 | Minus |
| 2L | 23513712 | 2L | 5211880..5212152 | 453..181 | 1365 | 100 | Minus |
| 2L | 23513712 | 2L | 5212212..5212376 | 183..19 | 825 | 100 | Minus |
| 2L | 23513712 | 2L | 5209058..5209174 | 180..64 | 210 | 78.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:50:23 has no hits.
BO09883.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:54 Download gff for
BO09883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10833-PA | 599..1509 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:20 Download gff for
BO09883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10833-PA | 599..1509 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:37:03 Download gff for
BO09883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28d1-RA | 641..1553 | 11..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:31 Download gff for
BO09883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28d1-RA | 641..1553 | 11..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:31 Download gff for
BO09883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5211348..5211821 | 453..926 | 99 | -> | Minus |
| 2L | 5211881..5212150 | 183..452 | 100 | -> | Minus |
| 2L | 5212213..5212381 | 11..182 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:37:03 Download gff for
BO09883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5211348..5211821 | 453..926 | 99 | -> | Minus |
| arm_2L | 5211881..5212150 | 183..452 | 100 | -> | Minus |
| arm_2L | 5212213..5212381 | 11..182 | 97 | | Minus |
BO09883.5prime Sequence
922 bp (871 high quality bases) assembled on 2006-04-19
> BO09883.5prime
GAAGTTATCAGTCGACATGTGTCCGATTTCCACGGCTCTTTTTGTAATTG
CGGCCATCCTGGCCTTGATCTATGTCTTTCTAACATGGAACTTTAGCTAC
TGGAAGAAGAGGGGCATTCCAACGGCCAAGTCATGGCCCTTTGTGGGCAG
TTTTCCCAGCGTTTTCACCCAGAAACGGAACGTAGTCTACGACATCGATG
AGATCTATGAGCAGTACAAGAACACCGACAGCATTGTGGGAGTGTTTCAA
ACCAGAATTCCACAACTAATGGTCACAACTCCGGAATATGCGCACAAGAT
ATATGTTAGTGACTTCCGCAGCTTCCACGACAATGAGATGGCTAAGTTTA
CCGACAGCAAAACGGATCCCATTTTGGCGAATAATCCGTTCGTATTGACT
GGTGAGGCCTGGAAAGAAAGACGCGCCGAAGTTACACCCGGACTTTCGGC
AAATCGGGTCAAAGCTGCCTATCCCGTCTCGCTGCGCGTTTGTAAAAAGT
TTGTGGAATATATAAGGCGACAGAGCCTGATGGCCCCCGCCCAAGGACTA
AATGCGAAGGATCTCTGCTTGTGCTACACCACCGAAGTGATTTCCGATTG
TGTCCTGGGCATTTCCGCCCAGAGTTTCACGGATAATCCCACACCCATGG
TGGGAATGACCAAGCGCGTCTTCGAACAGTCTTTTGGCTTCATTTTCTAC
ACGGTGGTCGCCAATCTATGGCCACCAATCACGAAATTCTACTCCGTTTC
GCTGTTCGCCAAGGACGTGGCTGCGTTCTTCTATGACCTCATGCAGAAGT
GCATCCAAGTTCGGCGGGAAAGTCCGGCGGCACAGCAGCGAGATGACTTC
CTCAACTACATGTTGCAGTTGCAGGAGAAAAAGGGACTGAATGCGGCGGA
GCTGACCTCGCACACAATGACA
BO09883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10833-PA | 1509 | Cyp28d1-RA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp28d1-RA | 1617 | CG10833-RA | 42..948 | 16..922 | 4535 | 100 | Plus |
| Cyp28d2-RA | 1673 | CG6081-RA | 94..726 | 69..701 | 495 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5211190..5211655 | 457..922 | 2330 | 100 | Plus |
| 2L | 23513712 | 2L | 5210501..5210696 | 16..211 | 980 | 100 | Plus |
| 2L | 23513712 | 2L | 5210751..5210889 | 211..349 | 695 | 100 | Plus |
| 2L | 23513712 | 2L | 5210954..5211063 | 350..459 | 550 | 100 | Plus |
| 2L | 23513712 | 2L | 5208022..5208266 | 457..701 | 295 | 74.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:09:12 has no hits.
BO09883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:55 Download gff for
BO09883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10833-PA | 1..905 | 17..921 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:22 Download gff for
BO09883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10833-PA | 1..905 | 17..921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:19 Download gff for
BO09883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28d1-RA | 38..947 | 11..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:32 Download gff for
BO09883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28d1-RA | 38..947 | 11..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:32 Download gff for
BO09883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5210497..5210695 | 11..210 | 99 | -> | Plus |
| 2L | 5210751..5210889 | 211..349 | 100 | -> | Plus |
| 2L | 5210954..5211061 | 350..457 | 100 | -> | Plus |
| 2L | 5211191..5211654 | 458..921 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:19 Download gff for
BO09883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5210497..5210695 | 11..210 | 99 | -> | Plus |
| arm_2L | 5210751..5210889 | 211..349 | 100 | -> | Plus |
| arm_2L | 5210954..5211061 | 350..457 | 100 | -> | Plus |
| arm_2L | 5211191..5211654 | 458..921 | 100 | | Plus |
BO09883.complete Sequence
1540 bp (1540 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631605
> BO09883.complete
GAAGTTATCAGTCGACATGTGTCCGATTTCCACGGCTCTTTTTGTAATTG
CGGCCATCCTGGCCTTGATCTATGTCTTTCTAACATGGAACTTTAGCTAC
TGGAAGAAGAGGGGCATTCCAACGGCCAAGTCATGGCCCTTTGTGGGCAG
TTTTCCCAGCGTTTTCACCCAGAAACGGAACGTAGTCTACGACATCGATG
AGATCTATGAGCAGTACAAGAACACCGACAGCATTGTGGGAGTGTTTCAA
ACCAGAATTCCACAACTAATGGTCACAACTCCGGAATATGCGCACAAGAT
ATATGTTAGTGACTTCCGCAGCTTCCACGACAATGAGATGGCTAAGTTTA
CCGACAGCAAAACGGATCCCATTTTGGCGAATAATCCGTTCGTATTGACT
GGTGAGGCCTGGAAAGAAAGACGCGCCGAAGTTACACCCGGACTTTCGGC
AAATCGGGTCAAAGCTGCCTATCCCGTCTCGCTGCGCGTTTGTAAAAAGT
TTGTGGAATATATAAGGCGACAGAGCCTGATGGCCCCCGCCCAAGGACTA
AATGCGAAGGATCTCTGCTTGTGCTACACCACCGAAGTGATTTCCGATTG
TGTCCTGGGCATTTCCGCCCAGAGTTTCACGGATAATCCCACACCCATGG
TGGGAATGACCAAGCGCGTCTTCGAACAGTCTTTTGGCTTCATTTTCTAC
ACGGTGGTCGCCAATCTATGGCCACCAATCACGAAATTCTACTCCGTTTC
GCTGTTCGCCAAGGACGTGGCTGCGTTCTTCTATGACCTCATGCAGAAGT
GCATCCAAGTTCGGCGGGAAAGTCCGGCGGCACAGCAGCGAGATGACTTC
CTCAACTACATGTTGCAGTTGCAGGAGAAAAAGGGACTGAATGCGGCGGA
GCTGACCTCGCACACAATGACATTTTTAACGGACGGATTCGAGACCACCG
CACAAGTGCTTACCCACACACTCCTTTTCCTGGCACGCAATCCCAAGGAG
CAGATGAAGTTGAGGGAGGAGATCGGTACCGCCGAGCTGACCTTTGAACA
GATAAGTGAGCTGCCCTTCACCGAAGCCTGCATCCATGAAACTTTGAGAA
TTTTCTCACCTGTTCTGGCTGCCCGCAAGGTGGTAACTGAGCCCTGTGAA
CTGACGAACAAAAACGGAGTGAGCGTGAAACTGAGACCCGGGGATGTAGT
CATCATTCCTGTGAACGCCTTGCACCACGATCCCCAATACTATGAGGAAC
CTCAATCGTTCAAGCCCGAGCGATTCCTGAACATCAATGGCGGAGCCAAA
AAGTACAGAGATCAGGGTCTATTCTTTGGGTTTGGCGATGGACCACGTAT
TTGCCCCGGTATGCGGTTTTCACTTACCCAAATCAAAGCTGCCCTGGTGG
AAATCGTGCGAAACTTCGACATCAAGGTTAATCCCAAAACTCGCAAGGAT
AATGAAATTGATGATACCTACTTTATGCCAGCCTTAAAAGGCGGCGTTTG
GCTGGATTTTGTTGAACGCAATGCAAGCTTTCTAGACCAT
BO09883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:09:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp28d1-RA | 1509 | CG10833-PA | 1..1506 | 17..1522 | 7530 | 100 | Plus |
| Cyp28d2-RA | 1506 | CG6081-PA | 53..685 | 69..701 | 450 | 71.4 | Plus |
| Cyp28d2-RA | 1506 | CG6081-PA | 1057..1461 | 1076..1477 | 295 | 72.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp28d1-RA | 1617 | CG10833-RA | 42..1548 | 16..1522 | 7535 | 100 | Plus |
| Cyp28d2-RA | 1673 | CG6081-RA | 94..726 | 69..701 | 450 | 71.4 | Plus |
| Cyp28d2-RA | 1673 | CG6081-RA | 1098..1502 | 1076..1477 | 295 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5211190..5211821 | 457..1088 | 3160 | 100 | Plus |
| 2L | 23513712 | 2L | 5211880..5212152 | 1088..1360 | 1365 | 100 | Plus |
| 2L | 23513712 | 2L | 5210501..5210696 | 16..211 | 980 | 100 | Plus |
| 2L | 23513712 | 2L | 5212212..5212376 | 1358..1522 | 825 | 100 | Plus |
| 2L | 23513712 | 2L | 5210751..5210889 | 211..349 | 695 | 100 | Plus |
| 2L | 23513712 | 2L | 5210954..5211063 | 350..459 | 550 | 100 | Plus |
| 2L | 23513712 | 2L | 5208022..5208266 | 457..701 | 295 | 74.7 | Plus |
| 2L | 23513712 | 2L | 5209058..5209174 | 1361..1477 | 210 | 78.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:09:27 has no hits.
BO09883.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:07 Download gff for
BO09883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28d1-RA | 1..1509 | 17..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:56 Download gff for
BO09883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28d1-RA | 19..1534 | 11..1530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:42 Download gff for
BO09883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28d1-RA | 43..1548 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:08 Download gff for
BO09883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28d1-RA | 19..1534 | 11..1530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:54 Download gff for
BO09883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28d1-RA | 43..1548 | 17..1524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:54 Download gff for
BO09883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5210502..5210695 | 17..210 | 100 | -> | Plus |
| 2L | 5210751..5210889 | 211..349 | 100 | -> | Plus |
| 2L | 5210954..5211061 | 350..457 | 100 | -> | Plus |
| 2L | 5211191..5211821 | 458..1088 | 100 | -> | Plus |
| 2L | 5211881..5212150 | 1089..1358 | 100 | -> | Plus |
| 2L | 5212213..5212376 | 1359..1524 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:42 Download gff for
BO09883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5210502..5210695 | 17..210 | 100 | -> | Plus |
| arm_2L | 5210751..5210889 | 211..349 | 100 | -> | Plus |
| arm_2L | 5210954..5211061 | 350..457 | 100 | -> | Plus |
| arm_2L | 5211191..5211821 | 458..1088 | 100 | -> | Plus |
| arm_2L | 5211881..5212150 | 1089..1358 | 100 | -> | Plus |
| arm_2L | 5212213..5212376 | 1359..1524 | 98 | | Plus |
BO09883.pep Sequence
Translation from 16 to 1540
> BO09883.pep
MCPISTALFVIAAILALIYVFLTWNFSYWKKRGIPTAKSWPFVGSFPSVF
TQKRNVVYDIDEIYEQYKNTDSIVGVFQTRIPQLMVTTPEYAHKIYVSDF
RSFHDNEMAKFTDSKTDPILANNPFVLTGEAWKERRAEVTPGLSANRVKA
AYPVSLRVCKKFVEYIRRQSLMAPAQGLNAKDLCLCYTTEVISDCVLGIS
AQSFTDNPTPMVGMTKRVFEQSFGFIFYTVVANLWPPITKFYSVSLFAKD
VAAFFYDLMQKCIQVRRESPAAQQRDDFLNYMLQLQEKKGLNAAELTSHT
MTFLTDGFETTAQVLTHTLLFLARNPKEQMKLREEIGTAELTFEQISELP
FTEACIHETLRIFSPVLAARKVVTEPCELTNKNGVSVKLRPGDVVIIPVN
ALHHDPQYYEEPQSFKPERFLNINGGAKKYRDQGLFFGFGDGPRICPGMR
FSLTQIKAALVEIVRNFDIKVNPKTRKDNEIDDTYFMPALKGGVWLDFVE
RNASFLDH
BO09883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp28d1-PA | 502 | CG10833-PA | 1..502 | 1..502 | 2633 | 100 | Plus |
| Cyp28d2-PA | 501 | CG6081-PA | 1..498 | 1..498 | 1856 | 67.7 | Plus |
| Cyp28a5-PA | 505 | CG8864-PA | 6..501 | 8..497 | 1244 | 45.3 | Plus |
| Cyp28c1-PB | 505 | CG1895-PB | 6..499 | 8..501 | 931 | 38.2 | Plus |
| Cyp28c1-PA | 505 | CG1895-PA | 6..499 | 8..501 | 931 | 38.2 | Plus |
