Clone Sequence Records
BO09887.3prime Sequence
913 bp (841 high quality bases) assembled on 2006-04-19
> BO09887.3prime
ATGGTCTAGAAAGCTTGCTAATCGAATGCTGCTTTCGATGGACATGTGCA
AGTTGTTGAACTCCCTTAGGTGCGAAAGGATGTCGTCCCGCTCCCGTTCA
TAGATATCCCAGAATTTGAGATATTGGTTAACGTGCTGGAGTACCAGGTT
GCGGGCAAAGTCAAGACAGCTCCTAACGTTACGCATCCGCCGCCTGCAGC
TGGTCAAGACCGAACGCACCTGCTGCTCCGGCTCCAATTGGGCGATCACA
AATGCAAAAACGTTTTGCACATCAATCCGCACATCGGTTGGGAAAACCAC
GGATTCCGCGCTCTTTGCCTGGGGGAAGACAATTAGAGACGGCGTGGTTG
GCATGGCCAACTCCCAGGGCAGATCATTAGCCTGGCTATCGAAGCGTACA
AAGTGCACCTCGGGGCTGCCGAGCAGCGCCGAAACCTGCAGAAATGCTTG
GGATAGAACGGCTGACAGAGCGCAGTCAGGACGATGCATAAATACCACAT
TGGTGACATTTGGTCGCTGGATTGCCTGCAACAGCATCTGTCTATTGTAT
TTTCTACTGAACCCAGATTCCATCATGGCAAGAGCATTTTTGTGAGTCCT
TGGCAATGTTCTGGCGTAAAACTGCCGTATAAAATCTTTAAGAGCTACGT
AGGAGAATGTGTGTTGCTGTGGCATAACATACAGTGACTCTTCAGCCGCA
TCCAAGATGAAAACCTGCACCTGCTGATGGGTTTGCTGAATGCCAAGCTG
GTGTAGATAGTCTCTATATTTCACAGAATCGAAGATCACCACGCCCAGCG
ACCGATTGTGGGCTGCGCGCTCCGTCGAGTGCTGCAAATGAGCTGGGCAT
ATTTGGTTACCATTTTGGCAATGCCGATTTTTATGGCCGGGCGTTCATGC
TGTGAGTGTGCCA
BO09887.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13671-PA | 2097 | CG13671-RA | 1278..2094 | 835..19 | 4085 | 100 | Minus |
| CG13671-PA | 2097 | CG13671-RA | 1222..1277 | 890..835 | 255 | 98.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13671-RA | 2278 | CG13671-RA | 1251..2146 | 913..19 | 4395 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8301314..8302209 | 913..19 | 4355 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-03 14:57:23 has no hits.
BO09887.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:00 Download gff for
BO09887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-PA | 1200..2097 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:29 Download gff for
BO09887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-PA | 1200..2097 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:15:47 Download gff for
BO09887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-RA | 1252..2150 | 13..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:43:51 Download gff for
BO09887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-RA | 1252..2150 | 13..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:43:51 Download gff for
BO09887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8301315..8302213 | 13..912 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:15:47 Download gff for
BO09887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8294415..8295313 | 13..912 | 99 | | Minus |
BO09887.5prime Sequence
784 bp (783 high quality bases) assembled on 2006-04-19
> BO09887.5prime
GAAGTTATCAGTCGACATGAAAATAATTTTGAGCCTGCTGCTCCTGGCTC
TCTCTATCGCTCAGTTGGACGCCTCAAGGTCAGCCACATCCGACCAGGCT
CCCATTGTCGAGTGTCCCGGACGCAGTGTTCCCCAGCTCCGTGCGGAAGC
GTCAGAGTCAGAGATCTCGCTGCTATTTTACTACGTGTCCTGGGCCAGCG
AAGCACGGCAGGCACGACTGGTCTACAATGGACTGGCCCACTATTACCAG
GAGTATGGCTTCTTTGGAGCCATCGATTGCTGGCACTTGCAGTGCAATTG
CAGCCGTACTTTGATGCCGGCACCAGGAGTCGCCGGCGCAGGAGGTTATC
CTGACAAATGGCCCACGCTGATCGTGCGCTACGGCCAAAAGCAGTTACTC
CAGTACCAGGGCTCGTGGAGCTTTGAAGATCTCGCCCGGTTCATGAATAA
CCTGCTTCAGCCACTGGACCGGGCACACAGTAGTCAGGATCTCGCCGCCA
TTCGGAAGCACTCGGATGCGGTGGTTTTGGGTCTGCTTGACTCGCCAGAC
GACAAGGCCTACAATCTTTACTTGGCTGCCGGTCTGCGCTGGCTGGAACT
GGATCCGGAGAGGAATATCCGCTTCACCGTGTACTTTGGCAACAGTGCCA
GGAAGATGTTGAAGTCCTCGGAGGCCAAGCTGCCCCAGTTTGTAGTTATC
GACAGCCGAAATGGAGTTCATACGTTTAATGGTACATCTGGAGTATGGAA
GACCATCGACATTCTGCGCTGGGTACGGAGCACA
BO09887.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13671-PA | 2097 | CG13671-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13671-RA | 2278 | CG13671-RA | 53..820 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8300116..8300883 | 17..784 | 3840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:47:28 has no hits.
BO09887.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:01 Download gff for
BO09887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:30 Download gff for
BO09887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:55:42 Download gff for
BO09887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-RA | 53..819 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:31:47 Download gff for
BO09887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-RA | 53..819 | 17..783 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:31:47 Download gff for
BO09887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8300116..8300882 | 17..783 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:55:42 Download gff for
BO09887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8293216..8293982 | 17..783 | 100 | | Plus |
BO09887.complete Sequence
2128 bp (2128 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ631606
> BO09887.complete
GAAGTTATCAGTCGACATGAAAATAATTTTGAGCCTGCTGCTCCTGGCTC
TCTCTATCGCTCAGTTGGACGCCTCAAGGTCAGCCACATCCGACCAGGCT
CCCATTGTCGAGTGTCCCGGACGCAGTGTTCCCCAGCTCCGTGCGGAAGC
GTCAGAGTCAGAGATCTCGCTGCTATTTTACTACGTGTCCTGGGCCAGCG
AAGCACGGCAGGCACGACTGGTCTACAATGGACTGGCCCACTATTACCAG
GAGTATGGCTTCTTTGGAGCCATCGATTGCTGGCACTTGCAGTGCAATTG
CAGCCGTACTTTGATGCCGGCACCAGGAGTCGCCGGCGCAGGAGGTTATC
CTGACAAATGGCCCACGCTGATCGTGCGCTACGGCCAAAAGCAGTTACTC
CAGTACCAGGGCTCGTGGAGCTTTGAAGATCTCGCCCGGTTCATGAATAA
CCTGCTTCAGCCACTGGACCGGGCACACAGTAGTCAGGATCTCGCCGCCA
TTCGGAAGCACTCGGATGCGGTGGTTTTGGGTCTGCTTGACTCGCCAGAC
GACAAGGCCTACAATCTTTACTTGGCTGCCGGTCTGCGCTGGCTGGAACT
GGATCCGGAGAGGAATATCCGCTTCACCGTGTACTTTGGCAACAGTGCCA
GGAAGATGTTGAAGTCCTCGGAGGCCAAGCTGCCCCAGTTTGTAGTTATC
GACAGCCGAAATGGAGTTCATACGTTTAATGGTACATCTGGAGTATGGAA
GACCATCGACATTCTGCGCTGGGTACGGAGCACACTCAAAAATATGTCGC
TGTTCTCCAATGGCTATGGCACTCCTATGACCATCGCCATGAAGGCACGA
CATGTCCCCGTGCTGGCTATGGGAGTTCGAATGAACCAATATCACCATGC
TAGCGTCATGGGCGAGGAGATGGCTTACGCTCAAAAAAAGCAGTCGGAGG
GGTGCGAAGACTACTGGAAAAAATTCGATAAACAATCTGAAGACATATCC
TCCTCCCTAAATCAAGTTCCCAAGGAGCTGTTTGGGGATGGTGAACAAAC
CCGGACATGTTACCCGGCCTGGAGTAAAAACAAGACCACACTTAAGAACT
ATTATCGGATTAATAGGTATCTAAACCACCTATGGAGGCAGTACTCGCAC
CAGAACCATCCGAGTTATCGAAACGTCCCCCACTTGCTGCGGCTTCACTC
CAGAAACCTTTGCCTGGCACACTCACAGCATGGAACGCCGGCCATAAAAA
TCGGCATTGCCAAAATGGTAACCAAATATGGCCAGCTCATTTGGCAGCAC
TCGACGGAGCGCGCAGCCCACAATCGGTCGCTGGGCGTGGTGATCTTCGA
TTCTGTGAAATATAGAGACTATCTACACCAGCTTGGCATTCAGCAAACCC
ATCAGCAGGTGCAGGTTTTCATCTTGGATGCGGCTGAAGAGTCACTGTAT
GTTATGCCACAGCAACACACATTCTCCTACGTAGCTCTTAAAGATTTTAT
ACGGCAGTTTTACGCCAGAACATTGCCAAGGACTCACAAAAATGCTCTTG
CCATGATGGAATCTGGGTTCAGTAGAAAATACAATAGACAGATGCTGTTG
CAGGCAATCCAGCGACCAAATGTCACCAATGTGGTATTTATGCATCGTCC
TGACTGCGCTCTGTCAGCCGTTCTATCCCAAGCATTTCTGCAGGTTTCGG
CGCTGCTCGGCAGCCCCGAGGTGCACTTTGTACGCTTCGATAGCCAGGCT
AATGATCTGCCCTGGGAGTTGGCCATGCCAACCACGCCGTCTCTAATTGT
CTTCCCCCAGGCAAAGAGCGCGGAATCCGTGGTTTTCCCAACCGATGTGC
GGATTGATGTGCAAAACGTTTTTGCATTTGTGATCGCCCAATTGGAGCCG
GAGCAGCAGGTGCGTTCGGTCTTGACCAGCTGCAGGCGGCGGATGCGTAA
CGTTAGGAGCTGTCTTGACTTTGCCCGCAACCTGGTACTCCAGCACGTTA
ACCAATATCTCAAATTCTGGGATATCTATGAACGGGAGCGGGACGACATC
CTTTCGCACCTAAGGGAGTTCAACAACTTGCACATGTCCATCGAAAGCAG
CATTCGATTAGCAAGCTTTCTAGACCAT
BO09887.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13671-RA | 2097 | CG13671-PA | 1..2094 | 17..2110 | 10470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13671-RA | 2278 | CG13671-RA | 53..2146 | 17..2110 | 10470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8300116..8302209 | 17..2110 | 10470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:38:33 has no hits.
BO09887.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:06 Download gff for
BO09887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-RA | 1..2097 | 17..2111 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:21 Download gff for
BO09887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-RA | 426..2523 | 17..2116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:54 Download gff for
BO09887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-RA | 53..2146 | 17..2112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:06 Download gff for
BO09887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-RA | 426..2523 | 17..2116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:34 Download gff for
BO09887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13671-RA | 53..2146 | 17..2112 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:34 Download gff for
BO09887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8300116..8302209 | 17..2112 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:54 Download gff for
BO09887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8293216..8295309 | 17..2112 | 99 | | Plus |
BO09887.pep Sequence
Translation from 16 to 2128
> BO09887.pep
MKIILSLLLLALSIAQLDASRSATSDQAPIVECPGRSVPQLRAEASESEI
SLLFYYVSWASEARQARLVYNGLAHYYQEYGFFGAIDCWHLQCNCSRTLM
PAPGVAGAGGYPDKWPTLIVRYGQKQLLQYQGSWSFEDLARFMNNLLQPL
DRAHSSQDLAAIRKHSDAVVLGLLDSPDDKAYNLYLAAGLRWLELDPERN
IRFTVYFGNSARKMLKSSEAKLPQFVVIDSRNGVHTFNGTSGVWKTIDIL
RWVRSTLKNMSLFSNGYGTPMTIAMKARHVPVLAMGVRMNQYHHASVMGE
EMAYAQKKQSEGCEDYWKKFDKQSEDISSSLNQVPKELFGDGEQTRTCYP
AWSKNKTTLKNYYRINRYLNHLWRQYSHQNHPSYRNVPHLLRLHSRNLCL
AHSQHGTPAIKIGIAKMVTKYGQLIWQHSTERAAHNRSLGVVIFDSVKYR
DYLHQLGIQQTHQQVQVFILDAAEESLYVMPQQHTFSYVALKDFIRQFYA
RTLPRTHKNALAMMESGFSRKYNRQMLLQAIQRPNVTNVVFMHRPDCALS
AVLSQAFLQVSALLGSPEVHFVRFDSQANDLPWELAMPTTPSLIVFPQAK
SAESVVFPTDVRIDVQNVFAFVIAQLEPEQQVRSVLTSCRRRMRNVRSCL
DFARNLVLQHVNQYLKFWDIYERERDDILSHLREFNNLHMSIESSIRLAS
FLDH
BO09887.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13671-PA | 698 | CG13671-PA | 1..698 | 1..698 | 3661 | 100 | Plus |
