Clone Sequence Records
BO09888.3prime Sequence
907 bp (816 high quality bases) assembled on 2006-04-19
> BO09888.3prime
ATGGTCTAGAAAGCTTGCGGAGCTGGCAGCCACCTCAGCTGTGCTGGGGG
CTGCAGATCCAGTCTCGATTGTCTCAGTCTCCATTGCCAAGTCTTCCGTT
TCGGCGGTGGCATCCATATCAGCTCCACCAGATGGCAGCTTTTGAAGCAG
GGCTCTGCGTGCAGATGGCTCTTTATCAGAGTCATCGTCGGATGATTCAC
TTTCTGAGCTATCGTTTCGCTTGTTTGCGGTATCCGAGGGTGCCTCAAGG
GATAGCCGGGGAGCCACGGGTCGCTTCTTCCTTGCCGGGTTAAGTACATT
GCAGAAGGCACACCGGAAGGTAGTGTACTCGTACTCCTCCTTCGGCAGCA
TTCCGTTGTGGGCGTGGCACGCCTTGCAGATCATGCCGAATCGATCCTTT
GGACTGTCACCCACGATGAAGTCCACAATGCGATCGATGGCACTTCGTGA
TCGATCGTCCACGATGGGAAAAGGCGATCGCCGTCGCAATTCTTGAACGG
CGCGCAACTGCGGCGAAGCTGACGTCATCTGTCCCAGTGAATGTGTGCTG
ATGACGCTGCTGTTCAGCGATGTGTTCTGGTTGTTGTTATTGTTGCGGTA
AACACTGGTGTATGGAGCCAGCGAGCGCTGCTGCTGCTGCTGTCCTCCGG
CTGATGAAGTTCGTGCGACGGCAGCGACGGTCAGTGGAGACCGCTCAACT
TGCGGGCGGTTGGGCGTTGAGCCGGTCGGCAGACCGCTGATGCGGAGCTG
CTTCTTGTCGCCAAAACGCTCCAGGAGATTCACCGCCACCTTATAGGTCT
CTTTGTCCATGACCTGCTCCAATATCTTGCGCTTGTCCTCCTTCAGACGA
GTCAGCTTATCGCCATTTTTGTTGAGCTTGCGCTGGAAGTACCACGTAAA
CAGCCGC
BO09888.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8735-PA | 1164 | CG8735-RA | 273..1161 | 907..19 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8735-RB | 1944 | CG8735-RB | 338..1226 | 907..19 | 4445 | 100 | Minus |
CG8735-RA | 1448 | CG8735-RA | 398..1286 | 907..19 | 4445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8598571..8599009 | 353..791 | 2195 | 100 | Plus |
2R | 25286936 | 2R | 8598113..8598290 | 177..354 | 890 | 100 | Plus |
2R | 25286936 | 2R | 8597690..8597848 | 19..177 | 795 | 100 | Plus |
2R | 25286936 | 2R | 8599267..8599388 | 786..907 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:50:17 has no hits.
BO09888.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:02 Download gff for
BO09888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-PA | 273..1164 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:31 Download gff for
BO09888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-PA | 273..1164 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:37:00 Download gff for
BO09888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 398..1286 | 19..907 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:28 Download gff for
BO09888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 398..1286 | 19..907 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:28 Download gff for
BO09888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8597690..8597847 | 19..176 | 100 | <- | Plus |
2R | 8598113..8598289 | 177..353 | 100 | <- | Plus |
2R | 8598572..8599007 | 354..789 | 100 | <- | Plus |
2R | 8599271..8599388 | 790..907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:37:00 Download gff for
BO09888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4485195..4485352 | 19..176 | 100 | <- | Plus |
arm_2R | 4485618..4485794 | 177..353 | 100 | <- | Plus |
arm_2R | 4486077..4486512 | 354..789 | 100 | <- | Plus |
arm_2R | 4486776..4486893 | 790..907 | 100 | | Plus |
BO09888.5prime Sequence
817 bp (781 high quality bases) assembled on 2006-04-19
> BO09888.5prime
GAAGTTATCAGTCGTCATGGGATTTGTGTTATCCAAGCTGCGGAAAGAAA
AGTCCACGGAGGCGGTGTTGGAGGGGCTGCAGACGCAGATCCAAGCGTTG
GAGAAGTACATGATCAACACCGAGGAGCGCAAGCGCCGGTTCGTGACGAA
CTTCGTGGGCTTCACCATCGGAGCATATATCGTGGGCTTCGGGCTCTGGT
GGTACTTCTACTTCCCGCCGACCATGCAGGAGTGCTTCATGTACCTGGTA
CCGCTGCTGCTATTCCCCATTGTCATCATCTTTCTGCGGCGGCTGTTTAC
GTGGTACTTCCAGCGCAAGCTCAACAAAAATGGCGATAAGCTGACTCGTC
TGAAGGAGGACAAGCGCAAGATATTGGAGCAGGTCATGGACAAAGAGACC
TATAAGGTGGCGGTGAATCTCCTGGAGCGTTTTGGCGACAAGAAGCAGCT
CCGCATCAGCGGTCTGCCGACCGGCTCAACGCCCAACCGCCCGCAAGTTG
AGCGGTCTCCACTGACCGTCGCTGCCGTCGCACGAACTTCATCAGCCGGA
GGACAGCAGCAGCAGCAGCGCTCGCTGGCTCCATACACCAGTGTTTACCG
CAACAATAACAACAACCAGAACACATCGCTGAACAGCAGCGTCATCAGCA
CACATTCACTGGGACAGATGACGTCAGCTTCGCCGCAGTTGCGCGCCGTT
CAAGAATTGCGACGGCGATCGCCTTTTCCCATCGTGGACGATCGATCACG
AAGTGCCATCGATCGCATTGTGGACTTCATCGTGGGTGACAGTCCAAAGG
ATCGATTCGGCATGATC
BO09888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8735-PA | 1164 | CG8735-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8735-RB | 1944 | CG8735-RB | 65..866 | 16..817 | 4010 | 100 | Plus |
CG8735-RA | 1448 | CG8735-RA | 125..926 | 16..817 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8598597..8599009 | 817..405 | 2065 | 100 | Minus |
2R | 25286936 | 2R | 8599472..8599702 | 273..43 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 8599267..8599403 | 410..274 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:19:36 has no hits.
BO09888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:03 Download gff for
BO09888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:32 Download gff for
BO09888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:45:33 Download gff for
BO09888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 116..926 | 7..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:40 Download gff for
BO09888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 116..926 | 7..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:40 Download gff for
BO09888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8599271..8599403 | 274..406 | 100 | <- | Minus |
2R | 8599472..8599701 | 44..273 | 100 | <- | Minus |
2R | 8598597..8599007 | 407..817 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:45:33 Download gff for
BO09888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4486102..4486512 | 407..817 | 100 | <- | Minus |
arm_2R | 4486776..4486908 | 274..406 | 100 | <- | Minus |
arm_2R | 4486977..4487206 | 44..273 | 100 | <- | Minus |
BO09888.complete Sequence
1195 bp assembled on 2008-08-15
GenBank Submission: FJ631607
> BO09888.complete
GAAGTTATCAGTCGTCATGGGATTTGTGTTATCCAAGCTGCGGAAAGAAA
AGTCCACGGAGGCGGTGTTGGAGGGGCTGCAGACGCAGATCCAAGCGTTG
GAGAAGTACATGATCAACACCGAGGAGCGCAAGCGCCGGTTCGTGACGAA
CTTCGTGGGCTTCACCATCGGAGCATATATCGTGGGCTTCGGGCTCTGGT
GGTACTTCTACTTCCCGCCGACCATGCAGGAGTGCTTCATGTACCTGGTA
CCGCTGCTGCTATTCCCCATTGTCATCATCTTTCTGCGGCGGCTGTTTAC
GTGGTACTTCCAGCGCAAGCTCAACAAAAATGGCGATAAGCTGACTCGTC
TGAAGGAGGACAAGCGCAAGATATTGGAGCAGGTCATGGACAAAGAGACC
TATAAGGTGGCGGTGAATCTCCTGGAGCGTTTTGGCGACAAGAAGCAGCT
CCGCATCAGCGGTCTGCCGACCGGCTCAACGCCCAACCGCCCGCAAGTTG
AGCGGTCTCCACTGACCGTCGCTGCCGTCGCACGAACTTCATCAGCCGGA
GGACAGCAGCAGCAGCAGCGCTCGCTGGCTCCATACACCAGTGTTTACCG
CAACAATAACAACAACCAGAACACATCGCTGAACAGCAGCGTCATCAGCA
CACATTCACTGGGACAGATGACGTCAGCTTCGCCGCAGTTGCGCGCCGTT
CAAGAATTGCGACGGCGATCGCCTTTTCCCATCGTGGACGATCGATCACG
AAGTGCCATCGATCGCATTGTGGACTTCATCGTGGGTGACAGTCCAAAGG
ATCGATTCGGCATGATCTGCAAGGCGTGCCACGCCCACAACGGAATGCTG
CCGAAGGAGGAGTACGAGTACACTACCTTCCGGTGTGCCTTCTGCAATGT
ACTTAACCCGGCAAGGAAGAAGCGACCCGTGGCTCCCCGGCTATCCCTTG
AGGCACCCTCGGATACCGCAAACAAGCGAAACGATAGCTCAGAAAGTGAA
TCATCCGACGATGACTCTGATAAAGAGCCATCTGCACGCAGAGCCCTGCT
TCAAAAGCTGCCATCTGGTGGAGCTGATATGGATGCCACCGCCGAAACGG
AAGACTTGGCAATGGAGACTGAGACAATCGAGACTGGATCTGCAGCCCCC
AGCACAGCTGAGGTGGCTGCCAGCTCCGCAAGCTTTCTAGACCAT
BO09888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8735-RB | 1164 | CG8735-PB | 1..1161 | 17..1177 | 5805 | 100 | Plus |
CG8735-RA | 1164 | CG8735-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8735-RB | 1944 | CG8735-RB | 65..1226 | 16..1177 | 5810 | 100 | Plus |
CG8735-RA | 1448 | CG8735-RA | 125..1286 | 16..1177 | 5810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8598571..8599009 | 843..405 | 2195 | 100 | Minus |
2R | 25286936 | 2R | 8599472..8599702 | 273..43 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 8598113..8598290 | 1019..842 | 890 | 100 | Minus |
2R | 25286936 | 2R | 8597690..8597848 | 1177..1019 | 795 | 100 | Minus |
2R | 25286936 | 2R | 8599267..8599403 | 410..274 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:48:17 has no hits.
BO09888.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:42 Download gff for
BO09888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 85..1255 | 7..1177 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:25 Download gff for
BO09888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 126..1286 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:48 Download gff for
BO09888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 95..1255 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:02 Download gff for
BO09888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 126..1286 | 17..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:02 Download gff for
BO09888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8599472..8599701 | 44..273 | 100 | <- | Minus |
2R | 8599811..8599837 | 17..43 | 100 | | Minus |
2R | 8597687..8597847 | 1020..1179 | 98 | <- | Minus |
2R | 8598113..8598289 | 843..1019 | 100 | <- | Minus |
2R | 8598572..8599007 | 407..842 | 100 | <- | Minus |
2R | 8599271..8599403 | 274..406 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:25 Download gff for
BO09888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4487316..4487342 | 17..43 | 100 | | Minus |
arm_2R | 4485192..4485352 | 1020..1179 | 98 | <- | Minus |
arm_2R | 4485618..4485794 | 843..1019 | 100 | <- | Minus |
arm_2R | 4486077..4486512 | 407..842 | 100 | <- | Minus |
arm_2R | 4486776..4486908 | 274..406 | 100 | <- | Minus |
arm_2R | 4486977..4487206 | 44..273 | 100 | <- | Minus |
BO09888.pep Sequence
Translation from 16 to 1195
> BO09888.pep
MGFVLSKLRKEKSTEAVLEGLQTQIQALEKYMINTEERKRRFVTNFVGFT
IGAYIVGFGLWWYFYFPPTMQECFMYLVPLLLFPIVIIFLRRLFTWYFQR
KLNKNGDKLTRLKEDKRKILEQVMDKETYKVAVNLLERFGDKKQLRISGL
PTGSTPNRPQVERSPLTVAAVARTSSAGGQQQQQRSLAPYTSVYRNNNNN
QNTSLNSSVISTHSLGQMTSASPQLRAVQELRRRSPFPIVDDRSRSAIDR
IVDFIVGDSPKDRFGMICKACHAHNGMLPKEEYEYTTFRCAFCNVLNPAR
KKRPVAPRLSLEAPSDTANKRNDSSESESSDDDSDKEPSARRALLQKLPS
GGADMDATAETEDLAMETETIETGSAAPSTAEVAASSASFLDH
BO09888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8735-PB | 387 | CG8735-PB | 1..387 | 1..387 | 1984 | 100 | Plus |
CG8735-PA | 387 | CG8735-PA | 1..387 | 1..387 | 1984 | 100 | Plus |