Clone BO09888 Report

Search the DGRC for BO09888

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG8735-RA
Protein status:BO09888.pep: Imported from assembly
Sequenced Size:1195

Clone Sequence Records

BO09888.3prime Sequence

907 bp (816 high quality bases) assembled on 2006-04-19

> BO09888.3prime
ATGGTCTAGAAAGCTTGCGGAGCTGGCAGCCACCTCAGCTGTGCTGGGGG
CTGCAGATCCAGTCTCGATTGTCTCAGTCTCCATTGCCAAGTCTTCCGTT
TCGGCGGTGGCATCCATATCAGCTCCACCAGATGGCAGCTTTTGAAGCAG
GGCTCTGCGTGCAGATGGCTCTTTATCAGAGTCATCGTCGGATGATTCAC
TTTCTGAGCTATCGTTTCGCTTGTTTGCGGTATCCGAGGGTGCCTCAAGG
GATAGCCGGGGAGCCACGGGTCGCTTCTTCCTTGCCGGGTTAAGTACATT
GCAGAAGGCACACCGGAAGGTAGTGTACTCGTACTCCTCCTTCGGCAGCA
TTCCGTTGTGGGCGTGGCACGCCTTGCAGATCATGCCGAATCGATCCTTT
GGACTGTCACCCACGATGAAGTCCACAATGCGATCGATGGCACTTCGTGA
TCGATCGTCCACGATGGGAAAAGGCGATCGCCGTCGCAATTCTTGAACGG
CGCGCAACTGCGGCGAAGCTGACGTCATCTGTCCCAGTGAATGTGTGCTG
ATGACGCTGCTGTTCAGCGATGTGTTCTGGTTGTTGTTATTGTTGCGGTA
AACACTGGTGTATGGAGCCAGCGAGCGCTGCTGCTGCTGCTGTCCTCCGG
CTGATGAAGTTCGTGCGACGGCAGCGACGGTCAGTGGAGACCGCTCAACT
TGCGGGCGGTTGGGCGTTGAGCCGGTCGGCAGACCGCTGATGCGGAGCTG
CTTCTTGTCGCCAAAACGCTCCAGGAGATTCACCGCCACCTTATAGGTCT
CTTTGTCCATGACCTGCTCCAATATCTTGCGCTTGTCCTCCTTCAGACGA
GTCAGCTTATCGCCATTTTTGTTGAGCTTGCGCTGGAAGTACCACGTAAA
CAGCCGC

BO09888.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-PA 1164 CG8735-RA 273..1161 907..19 4445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-RB 1944 CG8735-RB 338..1226 907..19 4445 100 Minus
CG8735-RA 1448 CG8735-RA 398..1286 907..19 4445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8598571..8599009 353..791 2195 100 Plus
2R 25286936 2R 8598113..8598290 177..354 890 100 Plus
2R 25286936 2R 8597690..8597848 19..177 795 100 Plus
2R 25286936 2R 8599267..8599388 786..907 610 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:50:17 has no hits.

BO09888.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:02 Download gff for BO09888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-PA 273..1164 16..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:31 Download gff for BO09888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-PA 273..1164 16..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:37:00 Download gff for BO09888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 398..1286 19..907 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:28 Download gff for BO09888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 398..1286 19..907 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:28 Download gff for BO09888.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8597690..8597847 19..176 100 <- Plus
2R 8598113..8598289 177..353 100 <- Plus
2R 8598572..8599007 354..789 100 <- Plus
2R 8599271..8599388 790..907 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:37:00 Download gff for BO09888.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4485195..4485352 19..176 100 <- Plus
arm_2R 4485618..4485794 177..353 100 <- Plus
arm_2R 4486077..4486512 354..789 100 <- Plus
arm_2R 4486776..4486893 790..907 100   Plus

BO09888.5prime Sequence

817 bp (781 high quality bases) assembled on 2006-04-19

> BO09888.5prime
GAAGTTATCAGTCGTCATGGGATTTGTGTTATCCAAGCTGCGGAAAGAAA
AGTCCACGGAGGCGGTGTTGGAGGGGCTGCAGACGCAGATCCAAGCGTTG
GAGAAGTACATGATCAACACCGAGGAGCGCAAGCGCCGGTTCGTGACGAA
CTTCGTGGGCTTCACCATCGGAGCATATATCGTGGGCTTCGGGCTCTGGT
GGTACTTCTACTTCCCGCCGACCATGCAGGAGTGCTTCATGTACCTGGTA
CCGCTGCTGCTATTCCCCATTGTCATCATCTTTCTGCGGCGGCTGTTTAC
GTGGTACTTCCAGCGCAAGCTCAACAAAAATGGCGATAAGCTGACTCGTC
TGAAGGAGGACAAGCGCAAGATATTGGAGCAGGTCATGGACAAAGAGACC
TATAAGGTGGCGGTGAATCTCCTGGAGCGTTTTGGCGACAAGAAGCAGCT
CCGCATCAGCGGTCTGCCGACCGGCTCAACGCCCAACCGCCCGCAAGTTG
AGCGGTCTCCACTGACCGTCGCTGCCGTCGCACGAACTTCATCAGCCGGA
GGACAGCAGCAGCAGCAGCGCTCGCTGGCTCCATACACCAGTGTTTACCG
CAACAATAACAACAACCAGAACACATCGCTGAACAGCAGCGTCATCAGCA
CACATTCACTGGGACAGATGACGTCAGCTTCGCCGCAGTTGCGCGCCGTT
CAAGAATTGCGACGGCGATCGCCTTTTCCCATCGTGGACGATCGATCACG
AAGTGCCATCGATCGCATTGTGGACTTCATCGTGGGTGACAGTCCAAAGG
ATCGATTCGGCATGATC

BO09888.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-PA 1164 CG8735-RA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-RB 1944 CG8735-RB 65..866 16..817 4010 100 Plus
CG8735-RA 1448 CG8735-RA 125..926 16..817 4010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8598597..8599009 817..405 2065 100 Minus
2R 25286936 2R 8599472..8599702 273..43 1155 100 Minus
2R 25286936 2R 8599267..8599403 410..274 685 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:19:36 has no hits.

BO09888.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:03 Download gff for BO09888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:32 Download gff for BO09888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:45:33 Download gff for BO09888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 116..926 7..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:40 Download gff for BO09888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 116..926 7..817 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:40 Download gff for BO09888.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8599271..8599403 274..406 100 <- Minus
2R 8599472..8599701 44..273 100 <- Minus
2R 8598597..8599007 407..817 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:45:33 Download gff for BO09888.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4486102..4486512 407..817 100 <- Minus
arm_2R 4486776..4486908 274..406 100 <- Minus
arm_2R 4486977..4487206 44..273 100 <- Minus

BO09888.complete Sequence

1195 bp assembled on 2008-08-15

GenBank Submission: FJ631607

> BO09888.complete
GAAGTTATCAGTCGTCATGGGATTTGTGTTATCCAAGCTGCGGAAAGAAA
AGTCCACGGAGGCGGTGTTGGAGGGGCTGCAGACGCAGATCCAAGCGTTG
GAGAAGTACATGATCAACACCGAGGAGCGCAAGCGCCGGTTCGTGACGAA
CTTCGTGGGCTTCACCATCGGAGCATATATCGTGGGCTTCGGGCTCTGGT
GGTACTTCTACTTCCCGCCGACCATGCAGGAGTGCTTCATGTACCTGGTA
CCGCTGCTGCTATTCCCCATTGTCATCATCTTTCTGCGGCGGCTGTTTAC
GTGGTACTTCCAGCGCAAGCTCAACAAAAATGGCGATAAGCTGACTCGTC
TGAAGGAGGACAAGCGCAAGATATTGGAGCAGGTCATGGACAAAGAGACC
TATAAGGTGGCGGTGAATCTCCTGGAGCGTTTTGGCGACAAGAAGCAGCT
CCGCATCAGCGGTCTGCCGACCGGCTCAACGCCCAACCGCCCGCAAGTTG
AGCGGTCTCCACTGACCGTCGCTGCCGTCGCACGAACTTCATCAGCCGGA
GGACAGCAGCAGCAGCAGCGCTCGCTGGCTCCATACACCAGTGTTTACCG
CAACAATAACAACAACCAGAACACATCGCTGAACAGCAGCGTCATCAGCA
CACATTCACTGGGACAGATGACGTCAGCTTCGCCGCAGTTGCGCGCCGTT
CAAGAATTGCGACGGCGATCGCCTTTTCCCATCGTGGACGATCGATCACG
AAGTGCCATCGATCGCATTGTGGACTTCATCGTGGGTGACAGTCCAAAGG
ATCGATTCGGCATGATCTGCAAGGCGTGCCACGCCCACAACGGAATGCTG
CCGAAGGAGGAGTACGAGTACACTACCTTCCGGTGTGCCTTCTGCAATGT
ACTTAACCCGGCAAGGAAGAAGCGACCCGTGGCTCCCCGGCTATCCCTTG
AGGCACCCTCGGATACCGCAAACAAGCGAAACGATAGCTCAGAAAGTGAA
TCATCCGACGATGACTCTGATAAAGAGCCATCTGCACGCAGAGCCCTGCT
TCAAAAGCTGCCATCTGGTGGAGCTGATATGGATGCCACCGCCGAAACGG
AAGACTTGGCAATGGAGACTGAGACAATCGAGACTGGATCTGCAGCCCCC
AGCACAGCTGAGGTGGCTGCCAGCTCCGCAAGCTTTCTAGACCAT

BO09888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-RB 1164 CG8735-PB 1..1161 17..1177 5805 100 Plus
CG8735-RA 1164 CG8735-PA 1..1161 17..1177 5805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-RB 1944 CG8735-RB 65..1226 16..1177 5810 100 Plus
CG8735-RA 1448 CG8735-RA 125..1286 16..1177 5810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8598571..8599009 843..405 2195 100 Minus
2R 25286936 2R 8599472..8599702 273..43 1155 100 Minus
2R 25286936 2R 8598113..8598290 1019..842 890 100 Minus
2R 25286936 2R 8597690..8597848 1177..1019 795 100 Minus
2R 25286936 2R 8599267..8599403 410..274 685 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:48:17 has no hits.

BO09888.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:42 Download gff for BO09888.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 85..1255 7..1177 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:25 Download gff for BO09888.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 126..1286 17..1179 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:48 Download gff for BO09888.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 95..1255 17..1179 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:02 Download gff for BO09888.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 126..1286 17..1179 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:02 Download gff for BO09888.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8599472..8599701 44..273 100 <- Minus
2R 8599811..8599837 17..43 100   Minus
2R 8597687..8597847 1020..1179 98 <- Minus
2R 8598113..8598289 843..1019 100 <- Minus
2R 8598572..8599007 407..842 100 <- Minus
2R 8599271..8599403 274..406 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:25 Download gff for BO09888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4487316..4487342 17..43 100   Minus
arm_2R 4485192..4485352 1020..1179 98 <- Minus
arm_2R 4485618..4485794 843..1019 100 <- Minus
arm_2R 4486077..4486512 407..842 100 <- Minus
arm_2R 4486776..4486908 274..406 100 <- Minus
arm_2R 4486977..4487206 44..273 100 <- Minus

BO09888.pep Sequence

Translation from 16 to 1195

> BO09888.pep
MGFVLSKLRKEKSTEAVLEGLQTQIQALEKYMINTEERKRRFVTNFVGFT
IGAYIVGFGLWWYFYFPPTMQECFMYLVPLLLFPIVIIFLRRLFTWYFQR
KLNKNGDKLTRLKEDKRKILEQVMDKETYKVAVNLLERFGDKKQLRISGL
PTGSTPNRPQVERSPLTVAAVARTSSAGGQQQQQRSLAPYTSVYRNNNNN
QNTSLNSSVISTHSLGQMTSASPQLRAVQELRRRSPFPIVDDRSRSAIDR
IVDFIVGDSPKDRFGMICKACHAHNGMLPKEEYEYTTFRCAFCNVLNPAR
KKRPVAPRLSLEAPSDTANKRNDSSESESSDDDSDKEPSARRALLQKLPS
GGADMDATAETEDLAMETETIETGSAAPSTAEVAASSASFLDH

BO09888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-PB 387 CG8735-PB 1..387 1..387 1984 100 Plus
CG8735-PA 387 CG8735-PA 1..387 1..387 1984 100 Plus