Clone BO09890 Report

Search the DGRC for BO09890

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:90
Vector:pDNR-Dual
Associated Gene/Transcriptbetaggt-II-RA
Protein status:BO09890.pep: Imported from assembly
Sequenced Size:1075

Clone Sequence Records

BO09890.3prime Sequence

957 bp (826 high quality bases) assembled on 2006-04-19

> BO09890.3prime
ATGGTCTAGAAAGCTTGCTGGCCTCGGCAATAGTTGCGGCTTGATGCCCA
GCCGGTCGATGATGTACTGCGGCATGCAGAGCGTTGGGTTGATGGCCTTC
AGGCCGGAATGTCCCAGTAGCGAGAGTCCGCCGATGCCGAACAGCGTGTG
GAATATGTCCGGCATGTTGCCAGTTCTGTCCGAGAAGCCACCGGTCTCCG
TGTCCTGGCACGACAGTATGAACTGCTGCAGCTTCTCCGAGCTGATCCAG
TGCAGGCGGCCCATGATGGTGAGCGAGGCGAGCACCCACCACGAATAGCA
TACATCCGGCAGCTTCTCGGGCCGTCCATTTAGCCCACCGGAGGGCAGCT
GCCGCTCGCAGAGCCACCAGCCCAGTTTGTCCACGTCGAGCAGATGCAGG
CGATGGGTCAGCGAGAAGAAGCCGACGCAGCAGTAGATGAGCCCCGCATG
CGACTCGGCGCCCGGCTTGGAACCGAATCCACCGTCCGTCTGATTGCAGC
ACGAGAGCACGAACTTGACCGCCTTCTCCACGTCGATGGTCTGCTCCATG
CGGCCGAGCAGCGTTAGGGAGGCCACCGCACAGAAGCTGAACCTGGTGTC
CACCTCGCCCCACTTGTCGCCAAAGAAGCTGCCGTCGGGCTGCTGCAGTC
CGACCACGAATCGGACCACCGCCTCGCGGTCGATCTCCTCGAGGGCGTCG
TAGGTGCAGAGGATCTGGATGGCCGACAGGGTGTACAGCAGGTGGGGATC
GTGGCCCTCGCAGGGTGCGAATCCGCCCGTGTTCGGACACTGACAACGCT
TCACAAACTCGATGATGGACTTGCGCTCCNATCGCTCCAGCTGGCCCATA
ATGTCCAGGGCAGTGGTGCCCCNATAGATGCCCGACATGCGCAGAAACTC
GGTCATGCAGTACTCGTAGTCGTCCTCCTGCTTTCCATGGGTCTCGATGT
ACTCCAC

BO09890.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG18627-PA 1044 betaggt-II-RA 103..1041 957..19 4607 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
betaggt-II-RA 1433 CG18627-RA 255..1193 957..19 4643 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2879366..2879880 957..443 2523 99.2 Minus
2L 23513712 2L 2880043..2880468 444..19 2130 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:30:15 has no hits.

BO09890.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:07 Download gff for BO09890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18627-PA 103..1044 16..957 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:37 Download gff for BO09890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18627-PA 103..1044 16..957 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:42:46 Download gff for BO09890.3prime
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 255..1193 19..957 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:53:35 Download gff for BO09890.3prime
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 255..1193 19..957 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:53:35 Download gff for BO09890.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2879366..2879879 444..957 99 -> Minus
2L 2880044..2880468 19..443 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:42:46 Download gff for BO09890.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2879366..2879879 444..957 99 -> Minus
arm_2L 2880044..2880468 19..443 100   Minus

BO09890.5prime Sequence

872 bp (863 high quality bases) assembled on 2006-04-19

> BO09890.5prime
GAAGTTATCAGTCGACATGGACTTCACGACCTTCGTTAAGCCCTCAAATG
GCGGTGGCGACAGCGGCGGTGGTGGTGATGCGGATGGCGGCGGCCAGAAG
CTGCAGTTCTGGAAGCATGTGGAGTACATCGAGAACCATGGGAAGCAGGA
GGACGACTACGAGTACTGCATGACCGAGTTTCTGCGCATGTCGGGCATCT
ATTGGGGCACCACTGCCCTGGACATTATGGGCCAGCTGGAGCGATTGGAG
CGCAAGTCCATCATCGAGTTTGTGAAGCGTTGTCAGTGTCCGAACACGGG
CGGATTCGCACCCTGCGAGGGCCACGATCCCCACCTGCTGTACACCCTGT
CGGCCATCCAGATCCTCTGCACCTACGACGCCCTCGAGGAGATCGACCGC
GAGGCGGTGGTCCGATTCGTGGTCGGACTGCAGCAGCCCGACGGCAGCTT
CTTTGGCGACAAGTGGGGCGAGGTGGACACCAGGTTCAGCTTCTGTGCGG
TGGCCTCCCTAACGCTGCTCGGCCGCATGGAGCAGACCATCGACGTGGAG
AAGGCGGTCAAGTTCGTGCTCTCGTGCTGCAATCAGACGGACGGTGGATT
CGGTTCCAAGCCGGGCGCCGAGTCGCATGCGGGGCTCATCTACTGCTGCG
TCGGCTTCTTCTCGCTGACCCATCGCCTGCATCTGCTCGACGTGGACAAA
CTGGGCTGGTGGCTCTGCGAGCGGCAGCTGCCCTCCGGTGGGCTAAATGG
ACGGCCCGAGAAGCTGCCGGATGTATGCTATTCGTGGTGGGTGCTCGCCT
CGCTCACCATCATGGGCCGCCTGCACTGGATCAGCTCGGAGAAGCTGCAG
CAGTTCATACTGTCGTGGCAGG

BO09890.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG18627-PA 1044 betaggt-II-RA 1..851 17..867 4230 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
betaggt-II-RA 1433 CG18627-RA 153..1008 17..872 4250 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2879264..2879880 17..633 3070 99.8 Plus
2L 23513712 2L 2880043..2880283 632..872 1190 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 17:56:15 has no hits.

BO09890.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:08 Download gff for BO09890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18627-PA 1..856 17..872 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:39 Download gff for BO09890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18627-PA 1..856 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:28:37 Download gff for BO09890.5prime
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 146..1008 7..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:06 Download gff for BO09890.5prime
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 146..1008 7..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:06 Download gff for BO09890.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2879257..2879879 7..632 99 -> Plus
2L 2880044..2880283 633..872 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:28:37 Download gff for BO09890.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2879257..2879879 7..632 99 -> Plus
arm_2L 2880044..2880283 633..872 99   Plus

BO09890.complete Sequence

1075 bp assembled on 2008-08-15

GenBank Submission: FJ631608

> BO09890.complete
GAAGTTATCAGTCGACATGGACTTCACGACCTTCGTTAAGCCCTCAAATG
GCGGTGGCGACAGCGGCGGTGGTGGTGATGCGGATGGCGGCGGCCAGAAG
CTGCAGTTCTGGAAGCATGTGGAGTACATCGAGAACCATGGGAAGCAGGA
GGACGACTACGAGTACTGCATGACCGAGTTTCTGCGCATGTCGGGCATCT
ATTGGGGCACCACTGCCCTGGACATTATGGGCCAGCTGGAGCGATTGGAG
CGCAAGTCCATCATCGAGTTTGTGAAGCGTTGTCAGTGTCCGAACACGGG
CGGATTCGCACCCTGCGAGGGCCACGATCCCCACCTGCTGTACACCCTGT
CGGCCATCCAGATCCTCTGCACCTACGACGCCCTCGAGGAGATCGACCGC
GAGGCGGTGGTCCGATTCGTGGTCGGACTGCAGCAGCCCGACGGCAGCTT
CTTTGGCGACAAGTGGGGCGAGGTGGACACCAGGTTCAGCTTCTGTGCGG
TGGCCTCCCTAACGCTGCTCGGCCGCATGGAGCAGACCATCGACGTGGAG
AAGGCGGTCAAGTTCGTGCTCTCGTGCTGCAATCAGACGGACGGTGGATT
CGGTTCCAAGCCGGGCGCCGAGTCGCATGCGGGGCTCATCTACTGCTGCG
TCGGCTTCTTCTCGCTGACCCATCGCCTGCATCTGCTCGACGTGGACAAA
CTGGGCTGGTGGCTCTGCGAGCGGCAGCTGCCCTCCGGTGGGCTAAATGG
ACGGCCCGAGAAGCTGCCGGATGTATGCTATTCGTGGTGGGTGCTCGCCT
CGCTCACCATCATGGGCCGCCTGCACTGGATCAGCTCGGAGAAGCTGCAG
CAGTTCATACTGTCGTGCCAGGACACGGAGACCGGTGGCTTCTCGGACAG
AACTGGCAACATGCCGGACATATTCCACACGCTGTTCGGCATCGGCGGAC
TCTCGCTACTGGGACATTCCGGCCTGAAGGCCATCAACCCAACGCTCTGC
ATGCCGCAGTACATCATCGACCGGCTGGGCATCAAGCCGCAACTATTGCC
GAGGCCAGCAAGCTTTCTAGACCAT

BO09890.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
betaggt-II-RA 1044 CG18627-PA 1..1041 17..1057 5190 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
betaggt-II-RA 1433 CG18627-RA 153..1193 17..1057 5190 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2879264..2879880 17..633 3070 99.8 Plus
2L 23513712 2L 2880043..2880468 632..1057 2130 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:48:50 has no hits.

BO09890.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:51 Download gff for BO09890.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 134..1181 7..1057 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:28 Download gff for BO09890.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 153..1193 17..1059 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:11 Download gff for BO09890.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 141..1181 17..1059 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:55 Download gff for BO09890.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 153..1193 17..1059 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:55 Download gff for BO09890.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2879264..2879879 17..632 99 -> Plus
2L 2880044..2880468 633..1059 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:28 Download gff for BO09890.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2879264..2879879 17..632 99 -> Plus
arm_2L 2880044..2880468 633..1059 99   Plus

BO09890.pep Sequence

Translation from 16 to 1075

> BO09890.pep
MDFTTFVKPSNGGGDSGGGGDADGGGQKLQFWKHVEYIENHGKQEDDYEY
CMTEFLRMSGIYWGTTALDIMGQLERLERKSIIEFVKRCQCPNTGGFAPC
EGHDPHLLYTLSAIQILCTYDALEEIDREAVVRFVVGLQQPDGSFFGDKW
GEVDTRFSFCAVASLTLLGRMEQTIDVEKAVKFVLSCCNQTDGGFGSKPG
AESHAGLIYCCVGFFSLTHRLHLLDVDKLGWWLCERQLPSGGLNGRPEKL
PDVCYSWWVLASLTIMGRLHWISSEKLQQFILSCQDTETGGFSDRTGNMP
DIFHTLFGIGGLSLLGHSGLKAINPTLCMPQYIIDRLGIKPQLLPRPASF
LDH

BO09890.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
betaggt-II-PA 347 CG18627-PA 1..347 1..347 1899 100 Plus
CG17565-PA 419 CG17565-PA 91..363 61..318 345 31.4 Plus
betaggt-I-PB 376 CG3469-PB 37..336 57..329 335 32.1 Plus
betaggt-I-PA 395 CG3469-PA 37..336 57..329 335 32.1 Plus