Clone Sequence Records
BO09890.3prime Sequence
957 bp (826 high quality bases) assembled on 2006-04-19
> BO09890.3prime
ATGGTCTAGAAAGCTTGCTGGCCTCGGCAATAGTTGCGGCTTGATGCCCA
GCCGGTCGATGATGTACTGCGGCATGCAGAGCGTTGGGTTGATGGCCTTC
AGGCCGGAATGTCCCAGTAGCGAGAGTCCGCCGATGCCGAACAGCGTGTG
GAATATGTCCGGCATGTTGCCAGTTCTGTCCGAGAAGCCACCGGTCTCCG
TGTCCTGGCACGACAGTATGAACTGCTGCAGCTTCTCCGAGCTGATCCAG
TGCAGGCGGCCCATGATGGTGAGCGAGGCGAGCACCCACCACGAATAGCA
TACATCCGGCAGCTTCTCGGGCCGTCCATTTAGCCCACCGGAGGGCAGCT
GCCGCTCGCAGAGCCACCAGCCCAGTTTGTCCACGTCGAGCAGATGCAGG
CGATGGGTCAGCGAGAAGAAGCCGACGCAGCAGTAGATGAGCCCCGCATG
CGACTCGGCGCCCGGCTTGGAACCGAATCCACCGTCCGTCTGATTGCAGC
ACGAGAGCACGAACTTGACCGCCTTCTCCACGTCGATGGTCTGCTCCATG
CGGCCGAGCAGCGTTAGGGAGGCCACCGCACAGAAGCTGAACCTGGTGTC
CACCTCGCCCCACTTGTCGCCAAAGAAGCTGCCGTCGGGCTGCTGCAGTC
CGACCACGAATCGGACCACCGCCTCGCGGTCGATCTCCTCGAGGGCGTCG
TAGGTGCAGAGGATCTGGATGGCCGACAGGGTGTACAGCAGGTGGGGATC
GTGGCCCTCGCAGGGTGCGAATCCGCCCGTGTTCGGACACTGACAACGCT
TCACAAACTCGATGATGGACTTGCGCTCCNATCGCTCCAGCTGGCCCATA
ATGTCCAGGGCAGTGGTGCCCCNATAGATGCCCGACATGCGCAGAAACTC
GGTCATGCAGTACTCGTAGTCGTCCTCCTGCTTTCCATGGGTCTCGATGT
ACTCCAC
BO09890.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18627-PA | 1044 | betaggt-II-RA | 103..1041 | 957..19 | 4607 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaggt-II-RA | 1433 | CG18627-RA | 255..1193 | 957..19 | 4643 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2879366..2879880 | 957..443 | 2523 | 99.2 | Minus |
2L | 23513712 | 2L | 2880043..2880468 | 444..19 | 2130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:30:15 has no hits.
BO09890.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:07 Download gff for
BO09890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18627-PA | 103..1044 | 16..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:37 Download gff for
BO09890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18627-PA | 103..1044 | 16..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:42:46 Download gff for
BO09890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 255..1193 | 19..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:53:35 Download gff for
BO09890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 255..1193 | 19..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:53:35 Download gff for
BO09890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2879366..2879879 | 444..957 | 99 | -> | Minus |
2L | 2880044..2880468 | 19..443 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:42:46 Download gff for
BO09890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2879366..2879879 | 444..957 | 99 | -> | Minus |
arm_2L | 2880044..2880468 | 19..443 | 100 | | Minus |
BO09890.5prime Sequence
872 bp (863 high quality bases) assembled on 2006-04-19
> BO09890.5prime
GAAGTTATCAGTCGACATGGACTTCACGACCTTCGTTAAGCCCTCAAATG
GCGGTGGCGACAGCGGCGGTGGTGGTGATGCGGATGGCGGCGGCCAGAAG
CTGCAGTTCTGGAAGCATGTGGAGTACATCGAGAACCATGGGAAGCAGGA
GGACGACTACGAGTACTGCATGACCGAGTTTCTGCGCATGTCGGGCATCT
ATTGGGGCACCACTGCCCTGGACATTATGGGCCAGCTGGAGCGATTGGAG
CGCAAGTCCATCATCGAGTTTGTGAAGCGTTGTCAGTGTCCGAACACGGG
CGGATTCGCACCCTGCGAGGGCCACGATCCCCACCTGCTGTACACCCTGT
CGGCCATCCAGATCCTCTGCACCTACGACGCCCTCGAGGAGATCGACCGC
GAGGCGGTGGTCCGATTCGTGGTCGGACTGCAGCAGCCCGACGGCAGCTT
CTTTGGCGACAAGTGGGGCGAGGTGGACACCAGGTTCAGCTTCTGTGCGG
TGGCCTCCCTAACGCTGCTCGGCCGCATGGAGCAGACCATCGACGTGGAG
AAGGCGGTCAAGTTCGTGCTCTCGTGCTGCAATCAGACGGACGGTGGATT
CGGTTCCAAGCCGGGCGCCGAGTCGCATGCGGGGCTCATCTACTGCTGCG
TCGGCTTCTTCTCGCTGACCCATCGCCTGCATCTGCTCGACGTGGACAAA
CTGGGCTGGTGGCTCTGCGAGCGGCAGCTGCCCTCCGGTGGGCTAAATGG
ACGGCCCGAGAAGCTGCCGGATGTATGCTATTCGTGGTGGGTGCTCGCCT
CGCTCACCATCATGGGCCGCCTGCACTGGATCAGCTCGGAGAAGCTGCAG
CAGTTCATACTGTCGTGGCAGG
BO09890.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18627-PA | 1044 | betaggt-II-RA | 1..851 | 17..867 | 4230 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaggt-II-RA | 1433 | CG18627-RA | 153..1008 | 17..872 | 4250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2879264..2879880 | 17..633 | 3070 | 99.8 | Plus |
2L | 23513712 | 2L | 2880043..2880283 | 632..872 | 1190 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:56:15 has no hits.
BO09890.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:08 Download gff for
BO09890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18627-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:39 Download gff for
BO09890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18627-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:28:37 Download gff for
BO09890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 146..1008 | 7..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:06 Download gff for
BO09890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 146..1008 | 7..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:06 Download gff for
BO09890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2879257..2879879 | 7..632 | 99 | -> | Plus |
2L | 2880044..2880283 | 633..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:28:37 Download gff for
BO09890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2879257..2879879 | 7..632 | 99 | -> | Plus |
arm_2L | 2880044..2880283 | 633..872 | 99 | | Plus |
BO09890.complete Sequence
1075 bp assembled on 2008-08-15
GenBank Submission: FJ631608
> BO09890.complete
GAAGTTATCAGTCGACATGGACTTCACGACCTTCGTTAAGCCCTCAAATG
GCGGTGGCGACAGCGGCGGTGGTGGTGATGCGGATGGCGGCGGCCAGAAG
CTGCAGTTCTGGAAGCATGTGGAGTACATCGAGAACCATGGGAAGCAGGA
GGACGACTACGAGTACTGCATGACCGAGTTTCTGCGCATGTCGGGCATCT
ATTGGGGCACCACTGCCCTGGACATTATGGGCCAGCTGGAGCGATTGGAG
CGCAAGTCCATCATCGAGTTTGTGAAGCGTTGTCAGTGTCCGAACACGGG
CGGATTCGCACCCTGCGAGGGCCACGATCCCCACCTGCTGTACACCCTGT
CGGCCATCCAGATCCTCTGCACCTACGACGCCCTCGAGGAGATCGACCGC
GAGGCGGTGGTCCGATTCGTGGTCGGACTGCAGCAGCCCGACGGCAGCTT
CTTTGGCGACAAGTGGGGCGAGGTGGACACCAGGTTCAGCTTCTGTGCGG
TGGCCTCCCTAACGCTGCTCGGCCGCATGGAGCAGACCATCGACGTGGAG
AAGGCGGTCAAGTTCGTGCTCTCGTGCTGCAATCAGACGGACGGTGGATT
CGGTTCCAAGCCGGGCGCCGAGTCGCATGCGGGGCTCATCTACTGCTGCG
TCGGCTTCTTCTCGCTGACCCATCGCCTGCATCTGCTCGACGTGGACAAA
CTGGGCTGGTGGCTCTGCGAGCGGCAGCTGCCCTCCGGTGGGCTAAATGG
ACGGCCCGAGAAGCTGCCGGATGTATGCTATTCGTGGTGGGTGCTCGCCT
CGCTCACCATCATGGGCCGCCTGCACTGGATCAGCTCGGAGAAGCTGCAG
CAGTTCATACTGTCGTGCCAGGACACGGAGACCGGTGGCTTCTCGGACAG
AACTGGCAACATGCCGGACATATTCCACACGCTGTTCGGCATCGGCGGAC
TCTCGCTACTGGGACATTCCGGCCTGAAGGCCATCAACCCAACGCTCTGC
ATGCCGCAGTACATCATCGACCGGCTGGGCATCAAGCCGCAACTATTGCC
GAGGCCAGCAAGCTTTCTAGACCAT
BO09890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaggt-II-RA | 1044 | CG18627-PA | 1..1041 | 17..1057 | 5190 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaggt-II-RA | 1433 | CG18627-RA | 153..1193 | 17..1057 | 5190 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2879264..2879880 | 17..633 | 3070 | 99.8 | Plus |
2L | 23513712 | 2L | 2880043..2880468 | 632..1057 | 2130 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:48:50 has no hits.
BO09890.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:51 Download gff for
BO09890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 134..1181 | 7..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:28 Download gff for
BO09890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 153..1193 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:11 Download gff for
BO09890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 141..1181 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:55 Download gff for
BO09890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 153..1193 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:55 Download gff for
BO09890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2879264..2879879 | 17..632 | 99 | -> | Plus |
2L | 2880044..2880468 | 633..1059 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:28 Download gff for
BO09890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2879264..2879879 | 17..632 | 99 | -> | Plus |
arm_2L | 2880044..2880468 | 633..1059 | 99 | | Plus |
BO09890.pep Sequence
Translation from 16 to 1075
> BO09890.pep
MDFTTFVKPSNGGGDSGGGGDADGGGQKLQFWKHVEYIENHGKQEDDYEY
CMTEFLRMSGIYWGTTALDIMGQLERLERKSIIEFVKRCQCPNTGGFAPC
EGHDPHLLYTLSAIQILCTYDALEEIDREAVVRFVVGLQQPDGSFFGDKW
GEVDTRFSFCAVASLTLLGRMEQTIDVEKAVKFVLSCCNQTDGGFGSKPG
AESHAGLIYCCVGFFSLTHRLHLLDVDKLGWWLCERQLPSGGLNGRPEKL
PDVCYSWWVLASLTIMGRLHWISSEKLQQFILSCQDTETGGFSDRTGNMP
DIFHTLFGIGGLSLLGHSGLKAINPTLCMPQYIIDRLGIKPQLLPRPASF
LDH
BO09890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaggt-II-PA | 347 | CG18627-PA | 1..347 | 1..347 | 1899 | 100 | Plus |
CG17565-PA | 419 | CG17565-PA | 91..363 | 61..318 | 345 | 31.4 | Plus |
betaggt-I-PB | 376 | CG3469-PB | 37..336 | 57..329 | 335 | 32.1 | Plus |
betaggt-I-PA | 395 | CG3469-PA | 37..336 | 57..329 | 335 | 32.1 | Plus |