Clone Sequence Records
BO09894.3prime Sequence
823 bp (822 high quality bases) assembled on 2006-04-19
> BO09894.3prime
ATGGTCTAGAAAGCTTGCGCTGAGCTTGCCGACTTCCAGTTTCCGTTGAA
TGGCCTCCCACGAGTTGTTCAGCAGCACGGCGAGAATGCCGGCCACCGTG
AACACGCCTCCGATGATGGAACAGCAATTCGTGGCGAAGTGGCCAAATGA
GCTGTGTCTCTCCGCATATTTCACCATCAGTGGCGAGAGCTCGTAGCTGA
AGAATATCCCCGGCATTCCGCGCTCGCGATCTGAAAGATCTTTTCGGTAT
CGCGTGACGGAGAATTGATTCGTGTATATGGGCTCGCCGTCGCTGTTTCC
TCGCATATATAATGTGGGAACAATTTTTAAATAGTAATTGAACATTTCAC
TTTTGGTTTCAGCCACGTCGACTCGTAGTCCATCCAAGGGATGCGTCTTG
GCGAACTCTATCTTCTCGCCGAACGATAGGTGATTGATTGTGTGCGATAG
CTTCACATTGCTGAACTGAAAGTCATGGATGTGGAACTGGCGGATGGAGA
AGCTCTTGCCGGGCGCAAAGTGAAAGCTGCCGGCCATTCGATTCACTTCC
AGGTGACCCTGGATGCGACAGCCCTCCTTGAAGGCGTCCTCGTCGCTGCG
TTTGTACTTGCCCTTACATTGCTCGATCTTGTCCACGGCCACGGTCCATT
TGCGCAGCCGGTAGGCGTCGAGAACATCCTCGCACGTGTTGCAGCAGTGA
GTAGCATTGTGCTCCGCTCCGTAACAACTGCCGCAAGTGACATTCTTATT
GGGCGGCGAAACTGCAACGATTTCCTTGATGGGCGTCTCCTTGAGGGGCT
CGCCATTGAGATCCAGCCGGTGC
BO09894.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7011-PA | 1122 | CG7011-RA | 315..1119 | 823..19 | 4025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7011-RA | 1343 | CG7011-RA | 448..1252 | 823..19 | 4025 | 100 | Minus |
Prp31-RA | 1862 | CG6876-RA | 1691..1826 | 19..154 | 680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:40:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15162500..15162837 | 360..697 | 1690 | 100 | Plus |
3L | 28110227 | 3L | 15161161..15161373 | 148..360 | 1050 | 99.5 | Plus |
3L | 28110227 | 3L | 15160967..15161102 | 19..154 | 680 | 100 | Plus |
3L | 28110227 | 3L | 15162987..15163112 | 698..823 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:40:18 has no hits.
BO09894.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:15 Download gff for
BO09894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-PA | 315..1122 | 15..823 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:48 Download gff for
BO09894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-PA | 315..1122 | 15..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:28:51 Download gff for
BO09894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 448..1255 | 15..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:50 Download gff for
BO09894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 448..1255 | 15..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:50 Download gff for
BO09894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15160968..15161099 | 20..151 | 100 | <- | Plus |
3L | 15161165..15161372 | 152..359 | 100 | <- | Plus |
3L | 15162500..15162837 | 360..697 | 100 | <- | Plus |
3L | 15162987..15163112 | 698..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:28:51 Download gff for
BO09894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15154068..15154199 | 20..151 | 100 | <- | Plus |
arm_3L | 15154265..15154472 | 152..359 | 100 | <- | Plus |
arm_3L | 15155600..15155937 | 360..697 | 100 | <- | Plus |
arm_3L | 15156087..15156212 | 698..823 | 100 | | Plus |
BO09894.5prime Sequence
946 bp (792 high quality bases) assembled on 2006-04-19
> BO09894.5prime
GAAGTTATCAGTCGACATGAAGTTCGCCGACGTGCTGCGTCGCCTGGACG
CCTATCCCCGCACACTGGATGACTTCAGCGTTCGCACAGTGGGCGGCGCC
GCAGTTACAATTATCAGTACCAGCATCATAAGCCTACTGATCTTCCTCGA
GGTCCTCAACTACATGCAGCCAACCCTAAATGAAGAGCTCTTCGTGGACA
CCACTCGTGATCACAAGTTGAGAATAAATCTGGACGTGACACTGCATAAT
CTGGCGTGCAACTACATCTCATTGGACGCAATGGATTCATCTGGCGACAC
ACACTTGAGGGTGGACCACGACGTCTTTAAGCACCGGCTGGATCTCAATG
GCGAGCCCCTCAAGGAGACGCCCATCAAGGAAATCGTTGCAGTTTCGCCG
CCCAATAAGAATGTCACTTGCGGCAGTTGTTACGGAGCGGAGCACAATGC
TACTCACTGCTGCAACACGTGCGAGGATGTTCTCGACGCCTACCGGCTGC
GCAAATGGACCGTGGCCGTGGACAAGATCGAGCAATGTAAGGGCAAGTAC
AAACGCAGCGACGAGGACGCCTTCAAGGAGGGCTGTCGCATCCAGGGTCA
CCTGGAAGTGAATCGAATGGCCGGCAGCTTTCACTTTGCGCCCGGCAAGA
GCTTCTCCATCCGCCAGTTCCACATCCATGACTTTCAGTTCAGCAATGTG
AAGCTATCGCACACAATCAATCACCTATCGTTCGGCGAGAAGATAGAGTT
CGCCAAGACGCATCCCTTGGATGGACTACGAGTCGACGTGGCTGAAACCA
AAAGTGAAATGTTCAATTACTATTTAAAAATTGTTCCCACATTATATATG
CGAGGAAACAGCGACGGCGAGCCCATATACACGAATCANTTCTCCGTCAC
GCGATACCGAAAAGATCTTTCAGATCGCGAGCGCGGAATGGCGGGG
BO09894.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7011-PA | 1122 | CG7011-RA | 1..930 | 17..946 | 4606 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7011-RA | 1343 | CG7011-RA | 134..1063 | 17..946 | 4624 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15162987..15163341 | 456..102 | 1775 | 100 | Minus |
3L | 28110227 | 3L | 15162500..15162837 | 794..457 | 1690 | 100 | Minus |
3L | 28110227 | 3L | 15161221..15161373 | 946..794 | 739 | 98.7 | Minus |
3L | 28110227 | 3L | 15163408..15163495 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:38:37 has no hits.
BO09894.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:16 Download gff for
BO09894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-PA | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:50 Download gff for
BO09894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-PA | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:54:25 Download gff for
BO09894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 129..1063 | 8..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:30:51 Download gff for
BO09894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 129..1063 | 8..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:30:51 Download gff for
BO09894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15161221..15161372 | 795..946 | 98 | <- | Minus |
3L | 15162500..15162837 | 457..794 | 100 | <- | Minus |
3L | 15162987..15163338 | 105..456 | 100 | <- | Minus |
3L | 15163408..15163500 | 8..104 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:54:25 Download gff for
BO09894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15154321..15154472 | 795..946 | 98 | <- | Minus |
arm_3L | 15155600..15155937 | 457..794 | 100 | <- | Minus |
arm_3L | 15156087..15156438 | 105..456 | 100 | <- | Minus |
arm_3L | 15156508..15156600 | 8..104 | 95 | | Minus |
BO09894.complete Sequence
1153 bp (1153 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631609
> BO09894.complete
GAAGTTATCAGTCGACATGAAGTTCGCCGACGTGCTGCGTCGCCTGGACG
CCTATCCCCGCACACTGGATGACTTCAGCGTTCGCACAGTGGGCGGCGCC
GCAGTTACAATTATCAGTACCAGCATCATAAGCCTACTGATCTTCCTCGA
GGTCCTCAACTACATGCAGCCAACCCTAAATGAAGAGCTCTTCGTGGACA
CCACTCGTGATCACAAGTTGAGAATAAATCTGGACGTGACACTGCATAAT
CTGGCGTGCAACTACATCTCATTGGACGCAATGGATTCATCTGGCGACAC
ACACTTGAGGGTGGACCACGACGTCTTTAAGCACCGGCTGGATCTCAATG
GCGAGCCCCTCAAGGAGACGCCCATCAAGGAAATCGTTGCAGTTTCGCCG
CCCAATAAGAATGTCACTTGCGGCAGTTGTTACGGAGCGGAGCACAATGC
TACTCACTGCTGCAACACGTGCGAGGATGTTCTCGACGCCTACCGGCTGC
GCAAATGGACCGTGGCCGTGGACAAGATCGAGCAATGTAAGGGCAAGTAC
AAACGCAGCGACGAGGACGCCTTCAAGGAGGGCTGTCGCATCCAGGGTCA
CCTGGAAGTGAATCGAATGGCCGGCAGCTTTCACTTTGCGCCCGGCAAGA
GCTTCTCCATCCGCCAGTTCCACATCCATGACTTTCAGTTCAGCAATGTG
AAGCTATCGCACACAATCAATCACCTATCGTTCGGCGAGAAGATAGAGTT
CGCCAAGACGCATCCCTTGGATGGACTACGAGTCGACGTGGCTGAAACCA
AAAGTGAAATGTTCAATTACTATTTAAAAATTGTTCCCACATTATATATG
CGAGGAAACAGCGACGGCGAGCCCATATACACGAATCAATTCTCCGTCAC
GCGATACCGAAAAGATCTTTCAGATCGCGAGCGCGGAATGCCGGGGATAT
TCTTCAGCTACGAGCTCTCGCCACTGATGGTGAAATATGCGGAGAGACAC
AGCTCATTTGGCCACTTCGCCACGAATTGCTGTTCCATCATCGGAGGCGT
GTTCACGGTGGCCGGCATTCTCGCCGTGCTGCTGAACAACTCGTGGGAGG
CCATTCAACGGAAACTGGAAGTCGGCAAGCTCAGCGCAAGCTTTCTAGAC
CAT
BO09894.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:24:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7011-RA | 1122 | CG7011-PA | 1..1119 | 17..1135 | 5595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7011-RA | 1343 | CG7011-RA | 134..1252 | 17..1135 | 5595 | 100 | Plus |
Prp31-RA | 1862 | CG6876-RA | 1691..1826 | 1135..1000 | 680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15162987..15163341 | 456..102 | 1775 | 100 | Minus |
3L | 28110227 | 3L | 15162500..15162837 | 794..457 | 1690 | 100 | Minus |
3L | 28110227 | 3L | 15161161..15161373 | 1006..794 | 1050 | 99.5 | Minus |
3L | 28110227 | 3L | 15160967..15161102 | 1135..1000 | 680 | 100 | Minus |
3L | 28110227 | 3L | 15163408..15163495 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:24:18 has no hits.
BO09894.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:40 Download gff for
BO09894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 1..1122 | 17..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:07 Download gff for
BO09894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 125..1251 | 8..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:58 Download gff for
BO09894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 134..1252 | 17..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:40 Download gff for
BO09894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 125..1251 | 8..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:17 Download gff for
BO09894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 134..1252 | 17..1137 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:17 Download gff for
BO09894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15160965..15161099 | 1003..1137 | 98 | <- | Minus |
3L | 15161165..15161372 | 795..1002 | 100 | <- | Minus |
3L | 15162500..15162837 | 457..794 | 100 | <- | Minus |
3L | 15162987..15163338 | 105..456 | 100 | <- | Minus |
3L | 15163408..15163495 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:58 Download gff for
BO09894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15156508..15156595 | 17..104 | 100 | | Minus |
arm_3L | 15154065..15154199 | 1003..1137 | 98 | <- | Minus |
arm_3L | 15154265..15154472 | 795..1002 | 100 | <- | Minus |
arm_3L | 15155600..15155937 | 457..794 | 100 | <- | Minus |
arm_3L | 15156087..15156438 | 105..456 | 100 | <- | Minus |
BO09894.pep Sequence
Translation from 16 to 1153
> BO09894.pep
MKFADVLRRLDAYPRTLDDFSVRTVGGAAVTIISTSIISLLIFLEVLNYM
QPTLNEELFVDTTRDHKLRINLDVTLHNLACNYISLDAMDSSGDTHLRVD
HDVFKHRLDLNGEPLKETPIKEIVAVSPPNKNVTCGSCYGAEHNATHCCN
TCEDVLDAYRLRKWTVAVDKIEQCKGKYKRSDEDAFKEGCRIQGHLEVNR
MAGSFHFAPGKSFSIRQFHIHDFQFSNVKLSHTINHLSFGEKIEFAKTHP
LDGLRVDVAETKSEMFNYYLKIVPTLYMRGNSDGEPIYTNQFSVTRYRKD
LSDRERGMPGIFFSYELSPLMVKYAERHSSFGHFATNCCSIIGGVFTVAG
ILAVLLNNSWEAIQRKLEVGKLSASFLDH
BO09894.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7011-PA | 373 | CG7011-PA | 1..373 | 1..373 | 1970 | 100 | Plus |
CG4293-PE | 439 | CG4293-PE | 19..364 | 8..356 | 210 | 23.2 | Plus |
CG4293-PD | 441 | CG4293-PD | 19..366 | 8..356 | 203 | 23.8 | Plus |
CG4293-PC | 441 | CG4293-PC | 19..366 | 8..356 | 203 | 23.8 | Plus |
CG4293-PA | 441 | CG4293-PA | 19..366 | 8..356 | 203 | 23.8 | Plus |