Clone BO09894 Report

Search the DGRC for BO09894

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG7011-RA
Protein status:BO09894.pep: validated full length
Sequenced Size:1153

Clone Sequence Records

BO09894.3prime Sequence

823 bp (822 high quality bases) assembled on 2006-04-19

> BO09894.3prime
ATGGTCTAGAAAGCTTGCGCTGAGCTTGCCGACTTCCAGTTTCCGTTGAA
TGGCCTCCCACGAGTTGTTCAGCAGCACGGCGAGAATGCCGGCCACCGTG
AACACGCCTCCGATGATGGAACAGCAATTCGTGGCGAAGTGGCCAAATGA
GCTGTGTCTCTCCGCATATTTCACCATCAGTGGCGAGAGCTCGTAGCTGA
AGAATATCCCCGGCATTCCGCGCTCGCGATCTGAAAGATCTTTTCGGTAT
CGCGTGACGGAGAATTGATTCGTGTATATGGGCTCGCCGTCGCTGTTTCC
TCGCATATATAATGTGGGAACAATTTTTAAATAGTAATTGAACATTTCAC
TTTTGGTTTCAGCCACGTCGACTCGTAGTCCATCCAAGGGATGCGTCTTG
GCGAACTCTATCTTCTCGCCGAACGATAGGTGATTGATTGTGTGCGATAG
CTTCACATTGCTGAACTGAAAGTCATGGATGTGGAACTGGCGGATGGAGA
AGCTCTTGCCGGGCGCAAAGTGAAAGCTGCCGGCCATTCGATTCACTTCC
AGGTGACCCTGGATGCGACAGCCCTCCTTGAAGGCGTCCTCGTCGCTGCG
TTTGTACTTGCCCTTACATTGCTCGATCTTGTCCACGGCCACGGTCCATT
TGCGCAGCCGGTAGGCGTCGAGAACATCCTCGCACGTGTTGCAGCAGTGA
GTAGCATTGTGCTCCGCTCCGTAACAACTGCCGCAAGTGACATTCTTATT
GGGCGGCGAAACTGCAACGATTTCCTTGATGGGCGTCTCCTTGAGGGGCT
CGCCATTGAGATCCAGCCGGTGC

BO09894.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-PA 1122 CG7011-RA 315..1119 823..19 4025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-RA 1343 CG7011-RA 448..1252 823..19 4025 100 Minus
Prp31-RA 1862 CG6876-RA 1691..1826 19..154 680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15162500..15162837 360..697 1690 100 Plus
3L 28110227 3L 15161161..15161373 148..360 1050 99.5 Plus
3L 28110227 3L 15160967..15161102 19..154 680 100 Plus
3L 28110227 3L 15162987..15163112 698..823 630 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:40:18 has no hits.

BO09894.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:15 Download gff for BO09894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-PA 315..1122 15..823 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:48 Download gff for BO09894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-PA 315..1122 15..823 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:28:51 Download gff for BO09894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 448..1255 15..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:50 Download gff for BO09894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 448..1255 15..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:50 Download gff for BO09894.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15160968..15161099 20..151 100 <- Plus
3L 15161165..15161372 152..359 100 <- Plus
3L 15162500..15162837 360..697 100 <- Plus
3L 15162987..15163112 698..823 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:28:51 Download gff for BO09894.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15154068..15154199 20..151 100 <- Plus
arm_3L 15154265..15154472 152..359 100 <- Plus
arm_3L 15155600..15155937 360..697 100 <- Plus
arm_3L 15156087..15156212 698..823 100   Plus

BO09894.5prime Sequence

946 bp (792 high quality bases) assembled on 2006-04-19

> BO09894.5prime
GAAGTTATCAGTCGACATGAAGTTCGCCGACGTGCTGCGTCGCCTGGACG
CCTATCCCCGCACACTGGATGACTTCAGCGTTCGCACAGTGGGCGGCGCC
GCAGTTACAATTATCAGTACCAGCATCATAAGCCTACTGATCTTCCTCGA
GGTCCTCAACTACATGCAGCCAACCCTAAATGAAGAGCTCTTCGTGGACA
CCACTCGTGATCACAAGTTGAGAATAAATCTGGACGTGACACTGCATAAT
CTGGCGTGCAACTACATCTCATTGGACGCAATGGATTCATCTGGCGACAC
ACACTTGAGGGTGGACCACGACGTCTTTAAGCACCGGCTGGATCTCAATG
GCGAGCCCCTCAAGGAGACGCCCATCAAGGAAATCGTTGCAGTTTCGCCG
CCCAATAAGAATGTCACTTGCGGCAGTTGTTACGGAGCGGAGCACAATGC
TACTCACTGCTGCAACACGTGCGAGGATGTTCTCGACGCCTACCGGCTGC
GCAAATGGACCGTGGCCGTGGACAAGATCGAGCAATGTAAGGGCAAGTAC
AAACGCAGCGACGAGGACGCCTTCAAGGAGGGCTGTCGCATCCAGGGTCA
CCTGGAAGTGAATCGAATGGCCGGCAGCTTTCACTTTGCGCCCGGCAAGA
GCTTCTCCATCCGCCAGTTCCACATCCATGACTTTCAGTTCAGCAATGTG
AAGCTATCGCACACAATCAATCACCTATCGTTCGGCGAGAAGATAGAGTT
CGCCAAGACGCATCCCTTGGATGGACTACGAGTCGACGTGGCTGAAACCA
AAAGTGAAATGTTCAATTACTATTTAAAAATTGTTCCCACATTATATATG
CGAGGAAACAGCGACGGCGAGCCCATATACACGAATCANTTCTCCGTCAC
GCGATACCGAAAAGATCTTTCAGATCGCGAGCGCGGAATGGCGGGG

BO09894.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-PA 1122 CG7011-RA 1..930 17..946 4606 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-RA 1343 CG7011-RA 134..1063 17..946 4624 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15162987..15163341 456..102 1775 100 Minus
3L 28110227 3L 15162500..15162837 794..457 1690 100 Minus
3L 28110227 3L 15161221..15161373 946..794 739 98.7 Minus
3L 28110227 3L 15163408..15163495 104..17 440 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:38:37 has no hits.

BO09894.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:16 Download gff for BO09894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-PA 1..930 17..946 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:50 Download gff for BO09894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-PA 1..930 17..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:54:25 Download gff for BO09894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 129..1063 8..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:30:51 Download gff for BO09894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 129..1063 8..946 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:30:51 Download gff for BO09894.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15161221..15161372 795..946 98 <- Minus
3L 15162500..15162837 457..794 100 <- Minus
3L 15162987..15163338 105..456 100 <- Minus
3L 15163408..15163500 8..104 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:54:25 Download gff for BO09894.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15154321..15154472 795..946 98 <- Minus
arm_3L 15155600..15155937 457..794 100 <- Minus
arm_3L 15156087..15156438 105..456 100 <- Minus
arm_3L 15156508..15156600 8..104 95   Minus

BO09894.complete Sequence

1153 bp (1153 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631609

> BO09894.complete
GAAGTTATCAGTCGACATGAAGTTCGCCGACGTGCTGCGTCGCCTGGACG
CCTATCCCCGCACACTGGATGACTTCAGCGTTCGCACAGTGGGCGGCGCC
GCAGTTACAATTATCAGTACCAGCATCATAAGCCTACTGATCTTCCTCGA
GGTCCTCAACTACATGCAGCCAACCCTAAATGAAGAGCTCTTCGTGGACA
CCACTCGTGATCACAAGTTGAGAATAAATCTGGACGTGACACTGCATAAT
CTGGCGTGCAACTACATCTCATTGGACGCAATGGATTCATCTGGCGACAC
ACACTTGAGGGTGGACCACGACGTCTTTAAGCACCGGCTGGATCTCAATG
GCGAGCCCCTCAAGGAGACGCCCATCAAGGAAATCGTTGCAGTTTCGCCG
CCCAATAAGAATGTCACTTGCGGCAGTTGTTACGGAGCGGAGCACAATGC
TACTCACTGCTGCAACACGTGCGAGGATGTTCTCGACGCCTACCGGCTGC
GCAAATGGACCGTGGCCGTGGACAAGATCGAGCAATGTAAGGGCAAGTAC
AAACGCAGCGACGAGGACGCCTTCAAGGAGGGCTGTCGCATCCAGGGTCA
CCTGGAAGTGAATCGAATGGCCGGCAGCTTTCACTTTGCGCCCGGCAAGA
GCTTCTCCATCCGCCAGTTCCACATCCATGACTTTCAGTTCAGCAATGTG
AAGCTATCGCACACAATCAATCACCTATCGTTCGGCGAGAAGATAGAGTT
CGCCAAGACGCATCCCTTGGATGGACTACGAGTCGACGTGGCTGAAACCA
AAAGTGAAATGTTCAATTACTATTTAAAAATTGTTCCCACATTATATATG
CGAGGAAACAGCGACGGCGAGCCCATATACACGAATCAATTCTCCGTCAC
GCGATACCGAAAAGATCTTTCAGATCGCGAGCGCGGAATGCCGGGGATAT
TCTTCAGCTACGAGCTCTCGCCACTGATGGTGAAATATGCGGAGAGACAC
AGCTCATTTGGCCACTTCGCCACGAATTGCTGTTCCATCATCGGAGGCGT
GTTCACGGTGGCCGGCATTCTCGCCGTGCTGCTGAACAACTCGTGGGAGG
CCATTCAACGGAAACTGGAAGTCGGCAAGCTCAGCGCAAGCTTTCTAGAC
CAT

BO09894.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-RA 1122 CG7011-PA 1..1119 17..1135 5595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-RA 1343 CG7011-RA 134..1252 17..1135 5595 100 Plus
Prp31-RA 1862 CG6876-RA 1691..1826 1135..1000 680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15162987..15163341 456..102 1775 100 Minus
3L 28110227 3L 15162500..15162837 794..457 1690 100 Minus
3L 28110227 3L 15161161..15161373 1006..794 1050 99.5 Minus
3L 28110227 3L 15160967..15161102 1135..1000 680 100 Minus
3L 28110227 3L 15163408..15163495 104..17 440 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:24:18 has no hits.

BO09894.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:40 Download gff for BO09894.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 1..1122 17..1139 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:07 Download gff for BO09894.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 125..1251 8..1139 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:58 Download gff for BO09894.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 134..1252 17..1137 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:40 Download gff for BO09894.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 125..1251 8..1139 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:17 Download gff for BO09894.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 134..1252 17..1137 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:17 Download gff for BO09894.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15160965..15161099 1003..1137 98 <- Minus
3L 15161165..15161372 795..1002 100 <- Minus
3L 15162500..15162837 457..794 100 <- Minus
3L 15162987..15163338 105..456 100 <- Minus
3L 15163408..15163495 17..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:58 Download gff for BO09894.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15156508..15156595 17..104 100   Minus
arm_3L 15154065..15154199 1003..1137 98 <- Minus
arm_3L 15154265..15154472 795..1002 100 <- Minus
arm_3L 15155600..15155937 457..794 100 <- Minus
arm_3L 15156087..15156438 105..456 100 <- Minus

BO09894.pep Sequence

Translation from 16 to 1153

> BO09894.pep
MKFADVLRRLDAYPRTLDDFSVRTVGGAAVTIISTSIISLLIFLEVLNYM
QPTLNEELFVDTTRDHKLRINLDVTLHNLACNYISLDAMDSSGDTHLRVD
HDVFKHRLDLNGEPLKETPIKEIVAVSPPNKNVTCGSCYGAEHNATHCCN
TCEDVLDAYRLRKWTVAVDKIEQCKGKYKRSDEDAFKEGCRIQGHLEVNR
MAGSFHFAPGKSFSIRQFHIHDFQFSNVKLSHTINHLSFGEKIEFAKTHP
LDGLRVDVAETKSEMFNYYLKIVPTLYMRGNSDGEPIYTNQFSVTRYRKD
LSDRERGMPGIFFSYELSPLMVKYAERHSSFGHFATNCCSIIGGVFTVAG
ILAVLLNNSWEAIQRKLEVGKLSASFLDH

BO09894.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-PA 373 CG7011-PA 1..373 1..373 1970 100 Plus
CG4293-PE 439 CG4293-PE 19..364 8..356 210 23.2 Plus
CG4293-PD 441 CG4293-PD 19..366 8..356 203 23.8 Plus
CG4293-PC 441 CG4293-PC 19..366 8..356 203 23.8 Plus
CG4293-PA 441 CG4293-PA 19..366 8..356 203 23.8 Plus