Clone Sequence Records
BO09902.5prime Sequence
883 bp (814 high quality bases) assembled on 2006-04-19
> BO09902.5prime
GAAGTTATCAGTCGACATGACTTGGGGATTTGTAACCTGCGGCCCCAACG
AGGCTTTAGTTGTCTCTGGGTGCTGCTACATGAAGCCGCTTTTGGTGCCG
GGAGGACGAGCATTCGTTTGGCCAGTGGGCCAGCAGGTTCAGCGAATTTC
GTTGAACACGATGACCCTCCAGGTAGAGAGTCCTTGCGTGTACACCAGCC
AAGGAGTGCCCATCTCGGTGACAGGCATTGCACAGGTGAAGGTCCAGGGT
CAGAACGAAGACATGCTGCTGACCGCCTGTGAGCAGTTCTTGGGCAAATC
AGAGGCAGAGATCAACCACATCGCCTTGGTCACCCTGGAGGGGCATCAGC
GTGCCATCATGGGTTCGATGACCGTGGAGGAGATCTACAAGGACCGCAAG
AAGTTCAGCAAGCAGGTGTTTGAGGTGGCCTCCAGCGATTTGGCCAACAT
GGGAATAACCGTGGTTTCCTACACCATCAAGGATTTGCGCGATGAGGAGG
GCTACCTGCGGTCATTGGGTATGGCTCGCACGGCGGAGGTGAAGCGCGAT
GCCCGCATTGGCGAGGCTGAGGCCCGAGCGGAGGCCCACATTAAGGAGGC
TATTGCCGAGGAGCAACGCATGGCCGCACGCTTCCTCAACGATACCGATA
TTGCCAAGGCCCAGCGCGACTTTGAGCTGAAGAAGGCAGCATACGATGTG
GAAGTGCAGACCAAAAAGGCCGAGGCCGAGATGGCCTACGAGCTGCAAGC
GGCCAAGACCAAGCAGCGCATCAAGGAGGAGCAGATGCAGGTGAAGGTGA
TCGAGCGCACGCAGGAGATTGCCGTCCAGGAGCANGAGATCATGCGCCGC
GAGCGGGAGCTGGAGGCCACCATCCGCCGACCG
BO09902.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8200-PA | 1281 | Flo-RA | 1..867 | 17..883 | 4191 | 99.3 | Plus |
| CG8200-PB | 1293 | Flo-RB | 1..486 | 17..502 | 2405 | 99.7 | Plus |
| CG8200-PB | 1293 | Flo-RB | 494..879 | 498..883 | 1811 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Flo1-RA | 1818 | CG8200-RA | 235..1101 | 17..883 | 4249 | 99.3 | Plus |
| Flo1-RB | 1830 | CG8200-RB | 235..1113 | 17..883 | 4119 | 98 | Plus |
| CG30466-RB | 2017 | CG30466-RB | 159..211 | 69..17 | 265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15567330..15567715 | 883..498 | 1859 | 98.7 | Minus |
| 2R | 25286936 | 2R | 15568151..15568507 | 500..144 | 1770 | 99.7 | Minus |
| 2R | 25286936 | 2R | 15568751..15568827 | 144..68 | 385 | 100 | Minus |
| 2R | 25286936 | 2R | 15569118..15569170 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:15:11 has no hits.
BO09902.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:26 Download gff for
BO09902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:00 Download gff for
BO09902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8200-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:38:52 Download gff for
BO09902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-1-RA | 232..1101 | 14..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:00:07 Download gff for
BO09902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo1-RA | 232..1101 | 14..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:00:07 Download gff for
BO09902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15567330..15567713 | 500..883 | 98 | <- | Minus |
| 2R | 15568152..15568506 | 145..499 | 99 | <- | Minus |
| 2R | 15568751..15568826 | 69..144 | 100 | <- | Minus |
| 2R | 15569119..15569172 | 11..68 | 91 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:38:52 Download gff for
BO09902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11454835..11455218 | 500..883 | 98 | <- | Minus |
| arm_2R | 11455657..11456011 | 145..499 | 99 | <- | Minus |
| arm_2R | 11456256..11456331 | 69..144 | 100 | <- | Minus |
| arm_2R | 11456624..11456677 | 11..68 | 91 | <- | Minus |
BO09902.3prime Sequence
878 bp (823 high quality bases) assembled on 2006-04-19
> BO09902.3prime
ATGGTCTAGAATGCTTGCGCCAGCATGCACAGACCGAGCAATGTCCACGC
CGGTTATGTTCTTGACCAGCTCTGGCACTTTGTTGACGATCGACAGAACC
TCGCCGGTCAGCTTGGCAGCACCGATATCGCCAGTTCCGCTGGACACCAT
CGTGATCTTCTTAGCCTGCGACAGTGGAGCAGCCACCTCGGCGGCAACCT
TTGGCAGTGTGTCCAGGAGCATCTCCACCATCGCAGCCTCGCGGTACTCG
CGATAGGCCTCTGCCTTCATGGCCATCTGCTCGGCCTCTGCTTTAGCCTT
GGCCGCAATGGCAAAGGCCTCAGCCTCACCACGAATCCTGATCGATTCAG
CCTCGGCCTCGGCTTCCATGACCACGCGCTGCTTGTTGGCCTCGGCCAAT
TTCTCCATGCGGAACTTCTCCGCCTCGGCCGGTCGGCGGATGGTGGCCTC
CAGCTCCCGCTCGCGGCGCATGATCTCCTGCTCCTGGACGGCAATCTCCT
GCGTGCGCTCGATCACCTTCACCTGCATCTGCTCCTCCTTGATGCGCTGC
TTGGTCTTGGCCGCTTGCAGCTCGTAGGCCATCTCGGCCTCGGCCTTTTT
GGTCTGCACTTCCACATCGTATGCTGCCTTCTTCAGCTCAAAGTCGCGCT
GGGCCTTGGCAATATCGGTATCGTTGAGGAAGCGTGCGGCCATGCGTTGC
TCCTCGGCAATAGCCTCCTTAATGTGGGCCTCCGCTCGGGCCTCAGCCTC
GCCAATGCGGGCATCGCGCTTCACCTCCGCCGTGCGAGCCATACCCAATG
ACCGCAGGTAGCCCTCCTCATCGCGCAAATCCTTGATGGTGTAGGAAACC
ACGGTTATTCCCATGTTGGCCAAATCGC
BO09902.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8200-PA | 1281 | Flo-RA | 419..1278 | 878..19 | 4100 | 99 | Minus |
| CG8200-PB | 1293 | Flo-RB | 494..1290 | 815..19 | 3785 | 98.9 | Minus |
| CG8200-PB | 1293 | Flo-RB | 419..486 | 878..811 | 340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Flo1-RA | 1818 | CG8200-RA | 653..1512 | 878..19 | 4180 | 99.1 | Minus |
| Flo1-RB | 1830 | CG8200-RB | 653..1524 | 878..19 | 4050 | 97.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15567243..15567715 | 343..815 | 2305 | 99.2 | Plus |
| 2R | 25286936 | 2R | 15566803..15566969 | 34..200 | 820 | 99.4 | Plus |
| 2R | 25286936 | 2R | 15567026..15567173 | 196..343 | 695 | 98 | Plus |
| 2R | 25286936 | 2R | 15568151..15568216 | 813..878 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:18:55 has no hits.
BO09902.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:25 Download gff for
BO09902.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-PA | 419..1281 | 15..878 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:32:59 Download gff for
BO09902.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8200-PA | 419..1281 | 15..878 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:33:54 Download gff for
BO09902.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-1-RA | 653..1515 | 15..878 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:53:34 Download gff for
BO09902.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo1-RA | 653..1515 | 15..878 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:53:34 Download gff for
BO09902.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15566803..15566967 | 34..198 | 99 | <- | Plus |
| 2R | 15567029..15567172 | 199..342 | 97 | <- | Plus |
| 2R | 15567243..15567713 | 343..813 | 99 | <- | Plus |
| 2R | 15568152..15568216 | 814..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:33:54 Download gff for
BO09902.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11454308..11454472 | 34..198 | 99 | <- | Plus |
| arm_2R | 11454534..11454677 | 199..342 | 97 | <- | Plus |
| arm_2R | 11454748..11455218 | 343..813 | 99 | <- | Plus |
| arm_2R | 11455657..11455721 | 814..878 | 100 | | Plus |
BO09902.complete Sequence
1312 bp assembled on 2008-08-15
GenBank Submission: MN238606
> BO09902.complete
GAAGTTATCAGTCGACATGACTTGGGGATTTGTAACCTGCGGCCCCAACG
AGGCTTTAGTTGTCTCTGGGTGCTGCTACATGAAGCCGCTTTTGGTGCCG
GGAGGACGAGCATTCGTTTGGCCAGTGGGCCAGCAGGTTCAGCGAATTTC
GTTGAACACGATGACCCTCCAGGTAGAGAGTCCTTGCGTGTACACCAGCC
AAGGAGTGCCCATCTCGGTGACAGGCATTGCACAGGTGAAGGTCCAGGGT
CAGAACGAAGACATGCTGCTGACCGCCTGTGAGCAGTTCTTGGGCAAATC
AGAGGCAGAGATCAACCACATCGCCTTGGTCACCCTGGAGGGGCATCAGC
GTGCCATCATGGGTTCGATGACCGTGGAGGAGATCTACAAGGACCGCAAG
AAGTTCAGCAAGCAGGTGTTTGAGGTGGCCTCCAGCGATTTGGCCAACAT
GGGAATAACCGTGGTTTCCTACACCATCAAGGATTTGCGCGATGAGGAGG
GCTACCTGCGGTCATTGGGTATGGCTCGCACGGCGGAGGTGAAGCGCGAT
GCCCGCATTGGCGAGGCTGAGGCCCGAGCGGAGGCCCACATTAAGGAGGC
TATTGCCGAGGAGCAACGCATGGCCGCACGCTTCCTCAACGATACCGATA
TTGCCAAGGCCCAGCGCGACTTTGAGCTGAAGAAGGCAGCATACGATGTG
GAAGTGCAGACCAAAAAGGCCGAGGCCGAGATGGCCTACGAGCTGCAAGC
GGCCAAGACCAAGCAGCGCATCAAGGAGGAGCAGATGCAGGTGAAGGTGA
TCGAGCGCACGCAGGAGATTGCCGTCCAGGAGCAGGAGATCATGCGCCGC
GAGCGGGAGCTGGAGGCCACCATCCGCCGACCGGCCGAGGCGGAGAAGTT
CCGCATGGAGAAATTGGCCGAGGCCAACAAGCAGCGCGTGGTCATGGAAG
CCGAGGCCGAGGCTGAATCGATCAGGATTCGTGGTGAGGCTGAGGCCTTT
GCCATTGCGGCCAAGGCTAAAGCAGAGGCCGAGCAGATGGCCATGAAGGC
AGAGGCCTATCGCGAGTACCGCGAGGCTGCGATGGTGGAGATGCTCCTGG
ACACACTGCCAAAGGTTGCCGCCGAGGTGGCTGCTCCACTGTCGCAGGCT
AAGAAGATCACGATGGTGTCCAGCGGAACTGGCGATATCGGTGCTGCCAA
GCTGACCGGCGAGGTTCTGTCGATCGTCAACAAAGTGCCAGAGCTGGTCA
AGAACATAACCGGCGTGGACATTGCTCGGTCTGTGCATGCTGGCGCAAGC
ATTCTAGACCAT
BO09902.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Flo1-RA | 1281 | CG8200-PA | 1..1278 | 17..1294 | 6255 | 99.3 | Plus |
| Flo1-RB | 1293 | CG8200-PB | 1..1290 | 17..1294 | 6100 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Flo1-RA | 1818 | CG8200-RA | 235..1512 | 17..1294 | 6255 | 99.3 | Plus |
| Flo1-RB | 1830 | CG8200-RB | 235..1524 | 17..1294 | 6100 | 98.4 | Plus |
| CG30466-RB | 2017 | CG30466-RB | 159..211 | 69..17 | 265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15567243..15567715 | 970..498 | 2305 | 99.2 | Minus |
| 2R | 25286936 | 2R | 15568151..15568507 | 500..144 | 1770 | 99.7 | Minus |
| 2R | 25286936 | 2R | 15566803..15566969 | 1279..1113 | 820 | 99.4 | Minus |
| 2R | 25286936 | 2R | 15567026..15567173 | 1117..970 | 695 | 98 | Minus |
| 2R | 25286936 | 2R | 15568751..15568827 | 144..68 | 385 | 100 | Minus |
| 2R | 25286936 | 2R | 15569118..15569170 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:59:55 has no hits.
BO09902.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:09 Download gff for
BO09902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-RA | 230..1513 | 14..1298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:47 Download gff for
BO09902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-1-RA | 235..1512 | 17..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:14 Download gff for
BO09902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-RA | 233..1510 | 17..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:36 Download gff for
BO09902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo1-RA | 235..1512 | 17..1296 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:36 Download gff for
BO09902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15568152..15568506 | 145..499 | 99 | <- | Minus |
| 2R | 15568751..15568826 | 69..144 | 100 | <- | Minus |
| 2R | 15569119..15569170 | 17..68 | 100 | | Minus |
| 2R | 15567243..15567713 | 500..970 | 99 | <- | Minus |
| 2R | 15566803..15566967 | 1115..1279 | 99 | <- | Minus |
| 2R | 15567029..15567172 | 971..1114 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:47 Download gff for
BO09902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11456624..11456675 | 17..68 | 100 | | Minus |
| arm_2R | 11454308..11454472 | 1115..1279 | 99 | <- | Minus |
| arm_2R | 11454534..11454677 | 971..1114 | 97 | <- | Minus |
| arm_2R | 11454748..11455218 | 500..970 | 99 | <- | Minus |
| arm_2R | 11455657..11456011 | 145..499 | 99 | <- | Minus |
| arm_2R | 11456256..11456331 | 69..144 | 100 | <- | Minus |
BO09902.pep Sequence
Translation from 16 to 1312
> BO09902.pep
MTWGFVTCGPNEALVVSGCCYMKPLLVPGGRAFVWPVGQQVQRISLNTMT
LQVESPCVYTSQGVPISVTGIAQVKVQGQNEDMLLTACEQFLGKSEAEIN
HIALVTLEGHQRAIMGSMTVEEIYKDRKKFSKQVFEVASSDLANMGITVV
SYTIKDLRDEEGYLRSLGMARTAEVKRDARIGEAEARAEAHIKEAIAEEQ
RMAARFLNDTDIAKAQRDFELKKAAYDVEVQTKKAEAEMAYELQAAKTKQ
RIKEEQMQVKVIERTQEIAVQEQEIMRRERELEATIRRPAEAEKFRMEKL
AEANKQRVVMEAEAEAESIRIRGEAEAFAIAAKAKAEAEQMAMKAEAYRE
YREAAMVEMLLDTLPKVAAEVAAPLSQAKKITMVSSGTGDIGAAKLTGEV
LSIVNKVPELVKNITGVDIARSVHAGASILDH
BO09902.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Flo1-PA | 426 | CG8200-PA | 1..426 | 1..426 | 2099 | 100 | Plus |
| Flo1-PB | 430 | CG8200-PB | 1..430 | 1..426 | 2084 | 99.1 | Plus |
| Flo2-PB | 425 | CG32593-PB | 6..415 | 7..421 | 961 | 48.7 | Plus |
| Flo2-PF | 425 | CG32593-PF | 6..415 | 7..421 | 961 | 48.7 | Plus |
| Flo2-PL | 440 | CG32593-PL | 6..415 | 7..421 | 961 | 48.7 | Plus |
