Clone Sequence Records
BO09908.3prime Sequence
916 bp (856 high quality bases) assembled on 2006-04-19
> BO09908.3prime
ATGGTCTAGAATGCTTGCTTTGCCCAGGTTAAAGTTGCGCAGCGAGCCGG
CTTTAAGACGCTGGTTGACATTCCGGGAAAGGGCGGTCGAGGATCTGATT
GTGGAAAGACCCTCTTCCTCGGCGCGCTGCGCAAAGGGGTCAACCTTCTC
AGAACCGCCCATTCCATTGTAGACAAAATTTGAGCCCGTCGTGGCCGTCA
ACGCAGAACTACTTGAACTTCCCAGCAGCAGTCTTGGCTTCTTGAAGATT
GAATACTTTTCACTGAGATCACTGCTGGTTTTCCGTATGGTTCCGCTGGT
CATAGACACACCGCCACCGACTCCCTTGATGGGCGATATTTTAGACTTGG
CCAGCCCAATGTTACCCTTAGTATTAAGAAGATGCGCCAACCCGACGCTG
CTGGATTTAATGTTGAGATATGGGGAGGTGGATTCTTCGATGCGCTTAAT
ATTCTCCTTAACTGTAGGGGAAATAGTGGTACGCCTTTCCTCCCTTTTAA
GGGCCAAAATGTTGCTGTTCAGACCACAAGAGGCATTTGGTGAGTCCAAG
TAAGCGGTCTTGTTCTCAAAAGCTTGTAGCTTCTCCTGCGCCTGGTAAAG
GTCGCTCTCCAGGTGTGAAACACGCTCTTCCAGCTTGCGCTTTAGTTCGA
TCTCCTTTCGCAGATCATTCTGCACCACCTTCACTACATTCCTGAGCTCC
GTCTTTTTGCTCTCGCATTGTCGCAACTCCCTCTTGAGAGTGGACACCCA
GTTGGCTAGGACATGTGGATCAGCCTCGTTCTTGAGCAAGCGGTCGGCAT
CCGCCGAGCCAGCCGCCAGAATAGCCGATATGCCTTCCATACTCTGGATC
TGTGATTTTCATGTTTTGTTTTCCTTGCGCAACCCCATCACGACATGGGC
ATCACTCTTGANGACG
BO09908.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5140-PA | 1308 | CG5140-RA | 439..1305 | 885..19 | 4285 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nopo-RA | 1553 | CG5140-RA | 513..1410 | 916..19 | 4404 | 99.4 | Minus |
nopo-RB | 1671 | CG5140-RB | 634..1528 | 916..19 | 4349 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:19:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18181246..18181524 | 916..638 | 1294 | 97.5 | Minus |
2R | 25286936 | 2R | 18182138..18182376 | 257..19 | 1195 | 100 | Minus |
2R | 25286936 | 2R | 18181874..18182077 | 459..256 | 1020 | 100 | Minus |
2R | 25286936 | 2R | 18181696..18181817 | 581..460 | 610 | 100 | Minus |
2R | 25286936 | 2R | 18181584..18181642 | 638..580 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:19:51 has no hits.
BO09908.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:35 Download gff for
BO09908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5140-PA | 408..1308 | 15..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:13 Download gff for
BO09908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5140-PA | 408..1308 | 15..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:17:03 Download gff for
BO09908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nopo-RA | 513..1414 | 14..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:56:03 Download gff for
BO09908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nopo-RA | 513..1414 | 14..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:56:03 Download gff for
BO09908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18181246..18181524 | 638..916 | 98 | -> | Minus |
2R | 18181585..18181642 | 580..637 | 100 | -> | Minus |
2R | 18181698..18181817 | 460..579 | 100 | -> | Minus |
2R | 18181874..18182077 | 256..459 | 100 | -> | Minus |
2R | 18182140..18182380 | 14..255 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:17:03 Download gff for
BO09908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14068751..14069029 | 638..916 | 98 | -> | Minus |
arm_2R | 14069090..14069147 | 580..637 | 100 | -> | Minus |
arm_2R | 14069203..14069322 | 460..579 | 100 | -> | Minus |
arm_2R | 14069379..14069582 | 256..459 | 100 | -> | Minus |
arm_2R | 14069645..14069885 | 14..255 | 99 | | Minus |
BO09908.5prime Sequence
880 bp (798 high quality bases) assembled on 2006-04-19
> BO09908.5prime
GAAGTTATCAGTCGACATGTTGAACTTAAACTGCGTGATATGCGCCGAAT
TGTTTGGCCAGGCCGACGAGGTTTTTGCCACAGTTTGTGGTCATATGTTC
CACCACAACTGTCTAAATCAATGGCTCGATCGATCAAAGACCTGTCCTCA
GTGCCGGAATAAGTGCACTACCCGCAACATATTTAGGGTCTATTTCAATC
TGGCCAACTTGGATGTGAGCCACATCGATGTTGGTTCACTGCAGGAGCAG
CTGGACAATGCGATGTTGTCCATGAAAATGGTCGAAAAAGAGCGCAACAA
GGATGAACAGCAGATTCGGGATCTGAAGGAAACACAAAAGAAGTGCCTCA
AAACCATAGCCGGTTTGGAGCAGAAGGTGCAAAAGAAGGATTTTCTCATC
AGCAGCTATGTCGAGCAAATTGGCGTCCTCAAGAGTGATGCCCATGTCGT
TGATGGGTTGCGCAAGGAAAACAAAACATTGAAATCACAGATCCAGAGTA
TGGAAGGCATATCGGCTATTCTGGCGGCTGGCTCGGCGGATGCCGACCGC
TTGCTCAAGAACGAGGCTGATCCACATGTCCTAGCCAACTGGGTGTCCAC
TCTCAAGAGGGAGTTGCGACAATGCGAGAGCAAAAAGACGGAGCTCAGGA
ATGTAGTGAAGGTGGTGCAGAATGATCTGCGAAAGGAGATCGAACTAAAG
CGCAAGCTGGAAGAGCGTGTTTCACACCTGGAGAGCGACCTTTACCAGGC
GCAGGAGAAGCTACAAGCTTTTGAGAACAAGACCGCTTACTTGGACTCAC
CAAATGCCTCTTGTGGTCTGAACAGCAACATTTTGGCCCTTAAAAGGGAG
GAAAGGCGTACCACTATTTCCCCTACAGTT
BO09908.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5140-PA | 1308 | CG5140-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nopo-RB | 1671 | CG5140-RB | 227..1090 | 17..880 | 4320 | 100 | Plus |
nopo-RA | 1553 | CG5140-RA | 106..969 | 17..880 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18181171..18181524 | 349..702 | 1770 | 100 | Plus |
2R | 25286936 | 2R | 18180896..18181112 | 132..348 | 1085 | 100 | Plus |
2R | 25286936 | 2R | 18181696..18181817 | 759..880 | 610 | 100 | Plus |
2R | 25286936 | 2R | 18180722..18180837 | 17..132 | 580 | 100 | Plus |
2R | 25286936 | 2R | 18181584..18181642 | 702..760 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:24:09 has no hits.
BO09908.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:36 Download gff for
BO09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5140-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:14 Download gff for
BO09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5140-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:20:17 Download gff for
BO09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nopo-RA | 106..969 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:43:52 Download gff for
BO09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nopo-RA | 106..969 | 17..880 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:43:52 Download gff for
BO09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18180897..18181112 | 133..348 | 100 | -> | Plus |
2R | 18181171..18181524 | 349..702 | 100 | -> | Plus |
2R | 18181585..18181642 | 703..760 | 100 | -> | Plus |
2R | 18181698..18181817 | 761..880 | 100 | | Plus |
2R | 18180722..18180837 | 17..132 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:20:17 Download gff for
BO09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14068227..14068342 | 17..132 | 100 | -> | Plus |
arm_2R | 14068402..14068617 | 133..348 | 100 | -> | Plus |
arm_2R | 14068676..14069029 | 349..702 | 100 | -> | Plus |
arm_2R | 14069090..14069147 | 703..760 | 100 | -> | Plus |
arm_2R | 14069203..14069322 | 761..880 | 100 | | Plus |
BO09908.complete Sequence
1339 bp assembled on 2008-08-15
> BO09908.complete
GAAGTTATCAGTCGACATGTTGAACTTAAACTGCGTGATATGCGCCGAAT
TGTTTGGCCAGGCCGACGAGGTTTTTGCCACAGTTTGTGGTCATATGTTC
CACCACAACTGTCTAAATCAATGGCTCGATCGATCAAAGACCTGTCCTCA
GTGCCGGAATAAGTGCACTACCCGCAACATATTTAGGGTCTATTTCAATC
TGGCCAACTTGGATGTGAGCCACATCGATGTTGGTTCACTGCAGGAGCAG
CTGGACAATGCGATGTTGTCCATGAAAATGGTCGAAAAAGAGCGCAACAA
GGATGAACAGCAGATTCGGGATCTGAAGGAAACACAAAAGAAGTGCCTCA
AAACCATAGCCGGTTTGGAGCAGAAGGTGCAAAAGAAGGATTTTCTCATC
AGCAGCTATGTCGAGCAAATTGGCGTCCTCAAGAGTGATGCCCATGTCGT
TGATGGGTTGCGCAAGGAAAACAAAACATTGAAATCACAGATCCAGAGTA
TGGAAGGCATATCGGCTATTCTGGCGGCTGGCTCGGCGGATGCCGACCGC
TTGCTCAAGAACGAGGCTGATCCACATGTCCTAGCCAACTGGGTGTCCAC
TCTCAAGAGGGAGTTGCGACAATGCGAGAGCAAAAAGACGGAGCTCAGGA
ATGTAGTGAAGGTGGTGCAGAATGATCTGCGAAAGGAGATCGAACTAAAG
CGCAAGCTGGAAGAGCGTGTTTCACACCTGGAGAGCGACCTTTACCAGGC
GCAGGAGAAGCTACAAGCTTTTGAGAACAAGACCGCTTACTTGGACTCAC
CAAATGCCTCTTGTGGTCTGAACAGCAACATTTTGGCCCTTAAAAGGGAG
GAAAGGCGTACCACTATTTCCCCTACAGTTAAGGAGAATATTAAGCGCAT
CGAAGAATCCACCTCCCCATATCTCAACATTAAATCCAGCAGCGTCGGGT
TGGCGCATCTTCTTAATACTAAGGGTAACATTGGGCTGGCCAAGTCTAAA
ATATCGCCCATCAAGGGAGTCGGTGGCGGTGTGTCTATGACCAGCGGAAC
CATACGGAAAACCAGCAGTGATCTCAGTGAAAAGTATTCAATCTTCAAGA
AGCCAAGACTGCTGCTGGGAAGTTCAAGTAGTTCTGCGTTGACGGCCACG
ACGGGCTCAAATTTTGTCTACAATGGAATGGGCGGTTCTGAGAAGGTTGA
CCCCTTTGCGCAGCGCGCCGAGGAAGAGGGTCTTTCCACAATCAGATCCT
CGACCGCCCTTTCCCGGAATGTCAACCAGCGTCTTAAAGCCGGCTCGCTG
CGCAACTTTAACCTGGGCAAAGCAAGCATTCTAGACCAT
BO09908.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nopo-RA | 1308 | CG5140-PA | 1..1305 | 17..1321 | 6525 | 100 | Plus |
nopo-RB | 1305 | CG5140-PB | 1..1302 | 17..1321 | 6445 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nopo-RA | 1553 | CG5140-RA | 106..1410 | 17..1321 | 6525 | 100 | Plus |
nopo-RB | 1671 | CG5140-RB | 227..1528 | 17..1321 | 6445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18181171..18181524 | 349..702 | 1770 | 100 | Plus |
2R | 25286936 | 2R | 18182138..18182376 | 1083..1321 | 1195 | 100 | Plus |
2R | 25286936 | 2R | 18180896..18181112 | 132..348 | 1085 | 100 | Plus |
2R | 25286936 | 2R | 18181874..18182077 | 881..1084 | 1020 | 100 | Plus |
2R | 25286936 | 2R | 18181696..18181817 | 759..880 | 610 | 100 | Plus |
2R | 25286936 | 2R | 18180722..18180837 | 17..132 | 580 | 100 | Plus |
2R | 25286936 | 2R | 18181584..18181642 | 702..760 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:47:16 has no hits.
BO09908.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:33 Download gff for
BO09908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nopo-RA | 227..1535 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:13 Download gff for
BO09908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nopo-RA | 111..1410 | 22..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:46 Download gff for
BO09908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nopo-RA | 232..1531 | 22..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:36 Download gff for
BO09908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nopo-RA | 111..1410 | 22..1323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:36 Download gff for
BO09908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18181171..18181524 | 349..702 | 100 | -> | Plus |
2R | 18181585..18181642 | 703..760 | 100 | -> | Plus |
2R | 18181698..18181817 | 761..880 | 100 | -> | Plus |
2R | 18181874..18182077 | 881..1084 | 100 | -> | Plus |
2R | 18182140..18182376 | 1085..1323 | 99 | | Plus |
2R | 18180727..18180837 | 22..132 | 100 | -> | Plus |
2R | 18180897..18181112 | 133..348 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:13 Download gff for
BO09908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14068402..14068617 | 133..348 | 100 | -> | Plus |
arm_2R | 14068232..14068342 | 22..132 | 100 | -> | Plus |
arm_2R | 14068676..14069029 | 349..702 | 100 | -> | Plus |
arm_2R | 14069090..14069147 | 703..760 | 100 | -> | Plus |
arm_2R | 14069203..14069322 | 761..880 | 100 | -> | Plus |
arm_2R | 14069379..14069582 | 881..1084 | 100 | -> | Plus |
arm_2R | 14069645..14069881 | 1085..1323 | 99 | | Plus |
BO09908.pep Sequence
Translation from 16 to 1339
> BO09908.pep
MLNLNCVICAELFGQADEVFATVCGHMFHHNCLNQWLDRSKTCPQCRNKC
TTRNIFRVYFNLANLDVSHIDVGSLQEQLDNAMLSMKMVEKERNKDEQQI
RDLKETQKKCLKTIAGLEQKVQKKDFLISSYVEQIGVLKSDAHVVDGLRK
ENKTLKSQIQSMEGISAILAAGSADADRLLKNEADPHVLANWVSTLKREL
RQCESKKTELRNVVKVVQNDLRKEIELKRKLEERVSHLESDLYQAQEKLQ
AFENKTAYLDSPNASCGLNSNILALKREERRTTISPTVKENIKRIEESTS
PYLNIKSSSVGLAHLLNTKGNIGLAKSKISPIKGVGGGVSMTSGTIRKTS
SDLSEKYSIFKKPRLLLGSSSSSALTATTGSNFVYNGMGGSEKVDPFAQR
AEEEGLSTIRSSTALSRNVNQRLKAGSLRNFNLGKASILDH
BO09908.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nopo-PA | 435 | CG5140-PA | 1..435 | 1..435 | 2196 | 100 | Plus |
nopo-PB | 434 | CG5140-PB | 1..434 | 1..435 | 2179 | 99.8 | Plus |
CG10916-PB | 263 | CG10916-PB | 28..90 | 2..63 | 195 | 52.4 | Plus |
CG10916-PA | 263 | CG10916-PA | 28..90 | 2..63 | 195 | 52.4 | Plus |