Clone BO09908 Report

Search the DGRC for BO09908

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:99
Well:8
Vector:pDNR-Dual
Associated Gene/Transcriptnopo-RA
Protein status:BO09908.pep: Imported from assembly
Sequenced Size:1339

Clone Sequence Records

BO09908.3prime Sequence

916 bp (856 high quality bases) assembled on 2006-04-19

> BO09908.3prime
ATGGTCTAGAATGCTTGCTTTGCCCAGGTTAAAGTTGCGCAGCGAGCCGG
CTTTAAGACGCTGGTTGACATTCCGGGAAAGGGCGGTCGAGGATCTGATT
GTGGAAAGACCCTCTTCCTCGGCGCGCTGCGCAAAGGGGTCAACCTTCTC
AGAACCGCCCATTCCATTGTAGACAAAATTTGAGCCCGTCGTGGCCGTCA
ACGCAGAACTACTTGAACTTCCCAGCAGCAGTCTTGGCTTCTTGAAGATT
GAATACTTTTCACTGAGATCACTGCTGGTTTTCCGTATGGTTCCGCTGGT
CATAGACACACCGCCACCGACTCCCTTGATGGGCGATATTTTAGACTTGG
CCAGCCCAATGTTACCCTTAGTATTAAGAAGATGCGCCAACCCGACGCTG
CTGGATTTAATGTTGAGATATGGGGAGGTGGATTCTTCGATGCGCTTAAT
ATTCTCCTTAACTGTAGGGGAAATAGTGGTACGCCTTTCCTCCCTTTTAA
GGGCCAAAATGTTGCTGTTCAGACCACAAGAGGCATTTGGTGAGTCCAAG
TAAGCGGTCTTGTTCTCAAAAGCTTGTAGCTTCTCCTGCGCCTGGTAAAG
GTCGCTCTCCAGGTGTGAAACACGCTCTTCCAGCTTGCGCTTTAGTTCGA
TCTCCTTTCGCAGATCATTCTGCACCACCTTCACTACATTCCTGAGCTCC
GTCTTTTTGCTCTCGCATTGTCGCAACTCCCTCTTGAGAGTGGACACCCA
GTTGGCTAGGACATGTGGATCAGCCTCGTTCTTGAGCAAGCGGTCGGCAT
CCGCCGAGCCAGCCGCCAGAATAGCCGATATGCCTTCCATACTCTGGATC
TGTGATTTTCATGTTTTGTTTTCCTTGCGCAACCCCATCACGACATGGGC
ATCACTCTTGANGACG

BO09908.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5140-PA 1308 CG5140-RA 439..1305 885..19 4285 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
nopo-RA 1553 CG5140-RA 513..1410 916..19 4404 99.4 Minus
nopo-RB 1671 CG5140-RB 634..1528 916..19 4349 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18181246..18181524 916..638 1294 97.5 Minus
2R 25286936 2R 18182138..18182376 257..19 1195 100 Minus
2R 25286936 2R 18181874..18182077 459..256 1020 100 Minus
2R 25286936 2R 18181696..18181817 581..460 610 100 Minus
2R 25286936 2R 18181584..18181642 638..580 295 100 Minus
Blast to na_te.dros performed on 2015-02-01 09:19:51 has no hits.

BO09908.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:35 Download gff for BO09908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5140-PA 408..1308 15..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:13 Download gff for BO09908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5140-PA 408..1308 15..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:17:03 Download gff for BO09908.3prime
Subject Subject Range Query Range Percent Splice Strand
nopo-RA 513..1414 14..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:56:03 Download gff for BO09908.3prime
Subject Subject Range Query Range Percent Splice Strand
nopo-RA 513..1414 14..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:56:03 Download gff for BO09908.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18181246..18181524 638..916 98 -> Minus
2R 18181585..18181642 580..637 100 -> Minus
2R 18181698..18181817 460..579 100 -> Minus
2R 18181874..18182077 256..459 100 -> Minus
2R 18182140..18182380 14..255 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:17:03 Download gff for BO09908.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14068751..14069029 638..916 98 -> Minus
arm_2R 14069090..14069147 580..637 100 -> Minus
arm_2R 14069203..14069322 460..579 100 -> Minus
arm_2R 14069379..14069582 256..459 100 -> Minus
arm_2R 14069645..14069885 14..255 99   Minus

BO09908.5prime Sequence

880 bp (798 high quality bases) assembled on 2006-04-19

> BO09908.5prime
GAAGTTATCAGTCGACATGTTGAACTTAAACTGCGTGATATGCGCCGAAT
TGTTTGGCCAGGCCGACGAGGTTTTTGCCACAGTTTGTGGTCATATGTTC
CACCACAACTGTCTAAATCAATGGCTCGATCGATCAAAGACCTGTCCTCA
GTGCCGGAATAAGTGCACTACCCGCAACATATTTAGGGTCTATTTCAATC
TGGCCAACTTGGATGTGAGCCACATCGATGTTGGTTCACTGCAGGAGCAG
CTGGACAATGCGATGTTGTCCATGAAAATGGTCGAAAAAGAGCGCAACAA
GGATGAACAGCAGATTCGGGATCTGAAGGAAACACAAAAGAAGTGCCTCA
AAACCATAGCCGGTTTGGAGCAGAAGGTGCAAAAGAAGGATTTTCTCATC
AGCAGCTATGTCGAGCAAATTGGCGTCCTCAAGAGTGATGCCCATGTCGT
TGATGGGTTGCGCAAGGAAAACAAAACATTGAAATCACAGATCCAGAGTA
TGGAAGGCATATCGGCTATTCTGGCGGCTGGCTCGGCGGATGCCGACCGC
TTGCTCAAGAACGAGGCTGATCCACATGTCCTAGCCAACTGGGTGTCCAC
TCTCAAGAGGGAGTTGCGACAATGCGAGAGCAAAAAGACGGAGCTCAGGA
ATGTAGTGAAGGTGGTGCAGAATGATCTGCGAAAGGAGATCGAACTAAAG
CGCAAGCTGGAAGAGCGTGTTTCACACCTGGAGAGCGACCTTTACCAGGC
GCAGGAGAAGCTACAAGCTTTTGAGAACAAGACCGCTTACTTGGACTCAC
CAAATGCCTCTTGTGGTCTGAACAGCAACATTTTGGCCCTTAAAAGGGAG
GAAAGGCGTACCACTATTTCCCCTACAGTT

BO09908.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5140-PA 1308 CG5140-RA 1..864 17..880 4320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
nopo-RB 1671 CG5140-RB 227..1090 17..880 4320 100 Plus
nopo-RA 1553 CG5140-RA 106..969 17..880 4320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18181171..18181524 349..702 1770 100 Plus
2R 25286936 2R 18180896..18181112 132..348 1085 100 Plus
2R 25286936 2R 18181696..18181817 759..880 610 100 Plus
2R 25286936 2R 18180722..18180837 17..132 580 100 Plus
2R 25286936 2R 18181584..18181642 702..760 295 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:24:09 has no hits.

BO09908.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:36 Download gff for BO09908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5140-PA 1..864 17..880 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:14 Download gff for BO09908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5140-PA 1..864 17..880 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:20:17 Download gff for BO09908.5prime
Subject Subject Range Query Range Percent Splice Strand
nopo-RA 106..969 17..880 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:43:52 Download gff for BO09908.5prime
Subject Subject Range Query Range Percent Splice Strand
nopo-RA 106..969 17..880 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:43:52 Download gff for BO09908.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18180897..18181112 133..348 100 -> Plus
2R 18181171..18181524 349..702 100 -> Plus
2R 18181585..18181642 703..760 100 -> Plus
2R 18181698..18181817 761..880 100   Plus
2R 18180722..18180837 17..132 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:20:17 Download gff for BO09908.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14068227..14068342 17..132 100 -> Plus
arm_2R 14068402..14068617 133..348 100 -> Plus
arm_2R 14068676..14069029 349..702 100 -> Plus
arm_2R 14069090..14069147 703..760 100 -> Plus
arm_2R 14069203..14069322 761..880 100   Plus

BO09908.complete Sequence

1339 bp assembled on 2008-08-15

> BO09908.complete
GAAGTTATCAGTCGACATGTTGAACTTAAACTGCGTGATATGCGCCGAAT
TGTTTGGCCAGGCCGACGAGGTTTTTGCCACAGTTTGTGGTCATATGTTC
CACCACAACTGTCTAAATCAATGGCTCGATCGATCAAAGACCTGTCCTCA
GTGCCGGAATAAGTGCACTACCCGCAACATATTTAGGGTCTATTTCAATC
TGGCCAACTTGGATGTGAGCCACATCGATGTTGGTTCACTGCAGGAGCAG
CTGGACAATGCGATGTTGTCCATGAAAATGGTCGAAAAAGAGCGCAACAA
GGATGAACAGCAGATTCGGGATCTGAAGGAAACACAAAAGAAGTGCCTCA
AAACCATAGCCGGTTTGGAGCAGAAGGTGCAAAAGAAGGATTTTCTCATC
AGCAGCTATGTCGAGCAAATTGGCGTCCTCAAGAGTGATGCCCATGTCGT
TGATGGGTTGCGCAAGGAAAACAAAACATTGAAATCACAGATCCAGAGTA
TGGAAGGCATATCGGCTATTCTGGCGGCTGGCTCGGCGGATGCCGACCGC
TTGCTCAAGAACGAGGCTGATCCACATGTCCTAGCCAACTGGGTGTCCAC
TCTCAAGAGGGAGTTGCGACAATGCGAGAGCAAAAAGACGGAGCTCAGGA
ATGTAGTGAAGGTGGTGCAGAATGATCTGCGAAAGGAGATCGAACTAAAG
CGCAAGCTGGAAGAGCGTGTTTCACACCTGGAGAGCGACCTTTACCAGGC
GCAGGAGAAGCTACAAGCTTTTGAGAACAAGACCGCTTACTTGGACTCAC
CAAATGCCTCTTGTGGTCTGAACAGCAACATTTTGGCCCTTAAAAGGGAG
GAAAGGCGTACCACTATTTCCCCTACAGTTAAGGAGAATATTAAGCGCAT
CGAAGAATCCACCTCCCCATATCTCAACATTAAATCCAGCAGCGTCGGGT
TGGCGCATCTTCTTAATACTAAGGGTAACATTGGGCTGGCCAAGTCTAAA
ATATCGCCCATCAAGGGAGTCGGTGGCGGTGTGTCTATGACCAGCGGAAC
CATACGGAAAACCAGCAGTGATCTCAGTGAAAAGTATTCAATCTTCAAGA
AGCCAAGACTGCTGCTGGGAAGTTCAAGTAGTTCTGCGTTGACGGCCACG
ACGGGCTCAAATTTTGTCTACAATGGAATGGGCGGTTCTGAGAAGGTTGA
CCCCTTTGCGCAGCGCGCCGAGGAAGAGGGTCTTTCCACAATCAGATCCT
CGACCGCCCTTTCCCGGAATGTCAACCAGCGTCTTAAAGCCGGCTCGCTG
CGCAACTTTAACCTGGGCAAAGCAAGCATTCTAGACCAT

BO09908.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
nopo-RA 1308 CG5140-PA 1..1305 17..1321 6525 100 Plus
nopo-RB 1305 CG5140-PB 1..1302 17..1321 6445 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
nopo-RA 1553 CG5140-RA 106..1410 17..1321 6525 100 Plus
nopo-RB 1671 CG5140-RB 227..1528 17..1321 6445 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18181171..18181524 349..702 1770 100 Plus
2R 25286936 2R 18182138..18182376 1083..1321 1195 100 Plus
2R 25286936 2R 18180896..18181112 132..348 1085 100 Plus
2R 25286936 2R 18181874..18182077 881..1084 1020 100 Plus
2R 25286936 2R 18181696..18181817 759..880 610 100 Plus
2R 25286936 2R 18180722..18180837 17..132 580 100 Plus
2R 25286936 2R 18181584..18181642 702..760 295 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:47:16 has no hits.

BO09908.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:33 Download gff for BO09908.complete
Subject Subject Range Query Range Percent Splice Strand
nopo-RA 227..1535 17..1326 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:13 Download gff for BO09908.complete
Subject Subject Range Query Range Percent Splice Strand
nopo-RA 111..1410 22..1323 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:46 Download gff for BO09908.complete
Subject Subject Range Query Range Percent Splice Strand
nopo-RA 232..1531 22..1323 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:36 Download gff for BO09908.complete
Subject Subject Range Query Range Percent Splice Strand
nopo-RA 111..1410 22..1323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:36 Download gff for BO09908.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18181171..18181524 349..702 100 -> Plus
2R 18181585..18181642 703..760 100 -> Plus
2R 18181698..18181817 761..880 100 -> Plus
2R 18181874..18182077 881..1084 100 -> Plus
2R 18182140..18182376 1085..1323 99   Plus
2R 18180727..18180837 22..132 100 -> Plus
2R 18180897..18181112 133..348 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:13 Download gff for BO09908.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14068402..14068617 133..348 100 -> Plus
arm_2R 14068232..14068342 22..132 100 -> Plus
arm_2R 14068676..14069029 349..702 100 -> Plus
arm_2R 14069090..14069147 703..760 100 -> Plus
arm_2R 14069203..14069322 761..880 100 -> Plus
arm_2R 14069379..14069582 881..1084 100 -> Plus
arm_2R 14069645..14069881 1085..1323 99   Plus

BO09908.pep Sequence

Translation from 16 to 1339

> BO09908.pep
MLNLNCVICAELFGQADEVFATVCGHMFHHNCLNQWLDRSKTCPQCRNKC
TTRNIFRVYFNLANLDVSHIDVGSLQEQLDNAMLSMKMVEKERNKDEQQI
RDLKETQKKCLKTIAGLEQKVQKKDFLISSYVEQIGVLKSDAHVVDGLRK
ENKTLKSQIQSMEGISAILAAGSADADRLLKNEADPHVLANWVSTLKREL
RQCESKKTELRNVVKVVQNDLRKEIELKRKLEERVSHLESDLYQAQEKLQ
AFENKTAYLDSPNASCGLNSNILALKREERRTTISPTVKENIKRIEESTS
PYLNIKSSSVGLAHLLNTKGNIGLAKSKISPIKGVGGGVSMTSGTIRKTS
SDLSEKYSIFKKPRLLLGSSSSSALTATTGSNFVYNGMGGSEKVDPFAQR
AEEEGLSTIRSSTALSRNVNQRLKAGSLRNFNLGKASILDH

BO09908.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
nopo-PA 435 CG5140-PA 1..435 1..435 2196 100 Plus
nopo-PB 434 CG5140-PB 1..434 1..435 2179 99.8 Plus
CG10916-PB 263 CG10916-PB 28..90 2..63 195 52.4 Plus
CG10916-PA 263 CG10916-PA 28..90 2..63 195 52.4 Plus