Clone Sequence Records
BO09911.3prime Sequence
877 bp (804 high quality bases) assembled on 2006-04-19
> BO09911.3prime
ATGGTCTAGAAAGCTTGCAGAACTGGCTTTCCTGCGCCTCTTGACGGGAG
TGGTGGCGGGTACAGGGCTTTCTTCTTCGATAATTTCATCTGCTTCGGCA
TCATCCTCTTCTGGCAACGTGACGCCATCCTCTAGGTTTGGTTCGTCATT
GGCAGTCTCCAGCTTGAGCAGCGCATTTTCCAGCGAGGCGAGGAAAGAGC
TCTCGCCGTACTCCGGCCACTGACGAAACTGACTAAATAGCGTCAGAATC
TGACTGGGCAGGAGATCTCCGAACTGTGTGTAGATGTTGATGCCGGGATA
GTAGTTTCTGGTGCTCATTGTAGTACTCTGGCACGAGTACTGTGGTAGTT
TCTTGGGCAATTCATCTGGATAGATGGGTGTTACGGACTCGGAGGACTTC
GGATTAATGATAAGCCGAGGTCCACAGCCGGGAACCCACTTTTCTAAATT
GGGTATTATTCTGTTTCGTCGGCTTACATAGTTCTGCTTAATGAAGAACC
AGAGAGCGGGTAGATCCTGCGACTGGCACAGCTCATGAAGATTGCGGCGC
GGAGTGAATTTCACCAAGTACAAGTACTCGGGATTGATGGACTGCACCTT
ACCCAACTTGCTACTCTTGGTGGGGCTATAGGCCATCTGCTGAGGTAGAA
AATCCTCGCGCGGCACCTTGGCTATGAATTTGTGCTCAAACAGAATTTGA
AACAGTACGCTGGTCGATCGGTAAATGAGGTAGCCAATCTCGTTGTTGCA
GGTGAGATGTATGTATATGGGTGGCGGCATGGCGAGGATCATCTCACAGC
GTCCAAGGTTGAAAAGGCTGGTCTGAAAAATGAGGGAGTTGATCAAGTGC
TTGAAGAATGGATAGGAGCCCACGGCG
BO09911.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3910-PA | 1359 | mtTFB2-RA | 498..1356 | 877..19 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB2-RA | 1512 | CG3910-RA | 593..1451 | 877..19 | 4295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10046776..10047199 | 442..19 | 2120 | 100 | Minus |
3R | 32079331 | 3R | 10046398..10046714 | 759..443 | 1585 | 100 | Minus |
3R | 32079331 | 3R | 10046219..10046336 | 877..760 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:38:53 has no hits.
BO09911.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:41 Download gff for
BO09911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3910-PA | 498..1359 | 18..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:22 Download gff for
BO09911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3910-PA | 498..1359 | 18..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:28:06 Download gff for
BO09911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 593..1456 | 11..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:43 Download gff for
BO09911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 593..1456 | 11..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:43 Download gff for
BO09911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10046776..10047204 | 11..442 | 99 | | Minus |
3R | 10046219..10046336 | 760..877 | 100 | -> | Minus |
3R | 10046398..10046714 | 443..759 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:28:06 Download gff for
BO09911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5871941..5872058 | 760..877 | 100 | -> | Minus |
arm_3R | 5872120..5872436 | 443..759 | 100 | -> | Minus |
arm_3R | 5872498..5872926 | 11..442 | 99 | | Minus |
BO09911.5prime Sequence
928 bp (718 high quality bases) assembled on 2006-04-19
> BO09911.5prime
GAAGTTATCAGTCGACATGCTGCCCCTGCGATGCAGTTGGTCCTTTGCCC
GGGCCAACTATAGCACCAAAAAGGAACTGGTGACTCGCTACAGCGGCGAT
TTCCCCGAGAAACTGCTCAACCGGAAGCAAAAGGTTCCCACTCACATGTA
CATTGCAAATTCGGAGGCTGCTGCAAGGATTAACCAGTACCTGGAGCCCC
ATTTCCAGAGCTCCGGTTGCGATACCGTGATGGAACTCAATTCCGGTGCT
GGGTACTTTACCCGGCATCTGTTGGACAGGGAATCCCAGTTTCGACGCAT
AATTCTGCTTGAGAGCATGGATCACTTTATGCCCAAAATCCAGGAGCTAC
ACACGCTATATCCGGAACGTGTGAAGGTGCGCCAAGGAGACTTTGTGAAC
CTGTGGAAGTTGGTGTACATGGACAAAATGGACGGTGGTTCCAGGGTGGC
GGATCTCCTGAGTGATGTGCCCCAGAAAGCGTTTACAGATGATATCAACA
TGCTAGTCTTCGGCGCCGTGGGCTCCTATCCATTCTTCAAGCACTTGATC
AACTCCCTCATTTTTCAGACCAGCCTTTTCAACCTTGGACGCTGTGAGAT
GATCCTCGCCATGCCGCCACCCATATACATACATCTCACCTGCAACAACG
AGATTGGCTACCTCATTTACCGATCGACCAGCGTACTGTTTCAAATTCTG
TTTGAGCACAAATTCATAGCCAAGGTGCCGCGCGAGGATTTTCTACCTCA
GCAGATGGCCTATAGCCCCACCAAGAGTAGCAAGTTGGGTAAGGTGCAGT
CCATCAATCCCGAGTACTTGTACTTGGTGAAATTCACTCCGCGCCGCAAT
CTTCATGAGCTGTGCCAGTCGCAGGATCTACCCGCTCTCTGGTTCTTCAT
TAAGCAGAACTATGTAAGCCGACAAAAC
BO09911.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3910-PA | 1359 | mtTFB2-RA | 1..907 | 17..923 | 4535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB2-RA | 1512 | CG3910-RA | 96..1007 | 17..928 | 4545 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10045669..10046143 | 17..491 | 2375 | 100 | Plus |
3R | 32079331 | 3R | 10046398..10046694 | 632..928 | 1470 | 99.7 | Plus |
3R | 32079331 | 3R | 10046196..10046336 | 491..631 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:54:36 has no hits.
BO09911.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:42 Download gff for
BO09911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3910-PA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:23 Download gff for
BO09911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3910-PA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:22:11 Download gff for
BO09911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 93..1007 | 14..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:17:31 Download gff for
BO09911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 93..1007 | 14..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:17:31 Download gff for
BO09911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10046398..10046694 | 632..928 | 99 | | Plus |
3R | 10045666..10046143 | 14..491 | 99 | -> | Plus |
3R | 10046197..10046336 | 492..631 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:22:11 Download gff for
BO09911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5871388..5871865 | 14..491 | 99 | -> | Plus |
arm_3R | 5871919..5872058 | 492..631 | 100 | -> | Plus |
arm_3R | 5872120..5872416 | 632..928 | 99 | | Plus |
BO09911.complete Sequence
1390 bp (1390 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631610
> BO09911.complete
GAAGTTATCAGTCGACATGCTGCCCCTGCGATGCAGTTGGTCCTTTGCCC
GGGCCAACTATAGCACCAAAAAGGAACTGGTGACTCGCTACAGCGGCGAT
TTCCCCGAGAAACTGCTCAACCGGAAGCAAAAGGTTCCCACTCACATGTA
CATTGCAAATTCGGAGGCTGCTGCAAGGATTAACCAGTACCTGGAGCCCC
ATTTCCAGAGCTCCGGTTGCGATACCGTGATGGAACTCAATTCCGGTGCT
GGGTACTTTACCCGGCATCTGTTGGACAGGGAATCCCAGTTTCGACGCAT
AATTCTGCTTGAGAGCATGGATCACTTTATGCCCAAAATCCAGGAGCTAC
ACACGCTATATCCGGAACGTGTGAAGGTGCGCCAAGGAGACTTTGTGAAC
CTGTGGAAGTTGGTGTACATGGACAAAATGGACGGTGGTTCCAGGGTGGC
GGATCTCCTGAGTGATGTGCCCCAGAAAGCGTTTACAGATGATATCAACA
TGCTAGTCTTCGGCGCCGTGGGCTCCTATCCATTCTTCAAGCACTTGATC
AACTCCCTCATTTTTCAGACCAGCCTTTTCAACCTTGGACGCTGTGAGAT
GATCCTCGCCATGCCGCCACCCATATACATACATCTCACCTGCAACAACG
AGATTGGCTACCTCATTTACCGATCGACCAGCGTACTGTTTCAAATTCTG
TTTGAGCACAAATTCATAGCCAAGGTGCCGCGCGAGGATTTTCTACCTCA
GCAGATGGCCTATAGCCCCACCAAGAGTAGCAAGTTGGGTAAGGTGCAGT
CCATCAATCCCGAGTACTTGTACTTGGTGAAATTCACTCCGCGCCGCAAT
CTTCATGAGCTGTGCCAGTCGCAGGATCTACCCGCTCTCTGGTTCTTCAT
TAAGCAGAACTATGTAAGCCGACGAAACAGAATAATACCCAATTTAGAAA
AGTGGGTTCCCGGCTGTGGACCTCGGCTTATCATTAATCCGAAGTCCTCC
GAGTCCGTAACACCCATCTATCCAGATGAATTGCCCAAGAAACTACCACA
GTACTCGTGCCAGAGTACTACAATGAGCACCAGAAACTACTATCCCGGCA
TCAACATCTACACACAGTTCGGAGATCTCCTGCCCAGTCAGATTCTGACG
CTATTTAGTCAGTTTCGTCAGTGGCCGGAGTACGGCGAGAGCTCTTTCCT
CGCCTCGCTGGAAAATGCGCTGCTCAAGCTGGAGACTGCCAATGACGAAC
CAAACCTAGAGGATGGCGTCACGTTGCCAGAAGAGGATGATGCCGAAGCA
GATGAAATTATCGAAGAAGAAAGCCCTGTACCCGCCACCACTCCCGTCAA
GAGGCGCAGGAAAGCCAGTTCTGCAAGCTTTCTAGACCAT
BO09911.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB2-RA | 1359 | CG3910-PA | 1..1356 | 17..1372 | 6780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB2-RA | 1512 | CG3910-RA | 96..1451 | 17..1372 | 6780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10045669..10046143 | 17..491 | 2375 | 100 | Plus |
3R | 32079331 | 3R | 10046776..10047199 | 949..1372 | 2120 | 100 | Plus |
3R | 32079331 | 3R | 10046398..10046714 | 632..948 | 1585 | 100 | Plus |
3R | 32079331 | 3R | 10046196..10046336 | 491..631 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:04:43 has no hits.
BO09911.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:09 Download gff for
BO09911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 1..1359 | 17..1373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:58 Download gff for
BO09911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 91..1454 | 14..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:57 Download gff for
BO09911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 96..1451 | 17..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:09 Download gff for
BO09911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 91..1454 | 14..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:29 Download gff for
BO09911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 96..1451 | 17..1374 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:29 Download gff for
BO09911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10045669..10046143 | 17..491 | 100 | -> | Plus |
3R | 10046197..10046336 | 492..631 | 100 | -> | Plus |
3R | 10046398..10046714 | 632..948 | 100 | -> | Plus |
3R | 10046776..10047199 | 949..1374 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:57 Download gff for
BO09911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5871391..5871865 | 17..491 | 100 | -> | Plus |
arm_3R | 5871919..5872058 | 492..631 | 100 | -> | Plus |
arm_3R | 5872120..5872436 | 632..948 | 100 | -> | Plus |
arm_3R | 5872498..5872921 | 949..1374 | 99 | | Plus |
BO09911.pep Sequence
Translation from 16 to 1390
> BO09911.pep
MLPLRCSWSFARANYSTKKELVTRYSGDFPEKLLNRKQKVPTHMYIANSE
AAARINQYLEPHFQSSGCDTVMELNSGAGYFTRHLLDRESQFRRIILLES
MDHFMPKIQELHTLYPERVKVRQGDFVNLWKLVYMDKMDGGSRVADLLSD
VPQKAFTDDINMLVFGAVGSYPFFKHLINSLIFQTSLFNLGRCEMILAMP
PPIYIHLTCNNEIGYLIYRSTSVLFQILFEHKFIAKVPREDFLPQQMAYS
PTKSSKLGKVQSINPEYLYLVKFTPRRNLHELCQSQDLPALWFFIKQNYV
SRRNRIIPNLEKWVPGCGPRLIINPKSSESVTPIYPDELPKKLPQYSCQS
TTMSTRNYYPGINIYTQFGDLLPSQILTLFSQFRQWPEYGESSFLASLEN
ALLKLETANDEPNLEDGVTLPEEDDAEADEIIEEESPVPATTPVKRRRKA
SSASFLDH
BO09911.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB2-PA | 452 | CG3910-PA | 1..452 | 1..452 | 2381 | 100 | Plus |