Clone BO09911 Report

Search the DGRC for BO09911

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:99
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptmtTFB2-RA
Protein status:BO09911.pep: validated full length
Sequenced Size:1390

Clone Sequence Records

BO09911.3prime Sequence

877 bp (804 high quality bases) assembled on 2006-04-19

> BO09911.3prime
ATGGTCTAGAAAGCTTGCAGAACTGGCTTTCCTGCGCCTCTTGACGGGAG
TGGTGGCGGGTACAGGGCTTTCTTCTTCGATAATTTCATCTGCTTCGGCA
TCATCCTCTTCTGGCAACGTGACGCCATCCTCTAGGTTTGGTTCGTCATT
GGCAGTCTCCAGCTTGAGCAGCGCATTTTCCAGCGAGGCGAGGAAAGAGC
TCTCGCCGTACTCCGGCCACTGACGAAACTGACTAAATAGCGTCAGAATC
TGACTGGGCAGGAGATCTCCGAACTGTGTGTAGATGTTGATGCCGGGATA
GTAGTTTCTGGTGCTCATTGTAGTACTCTGGCACGAGTACTGTGGTAGTT
TCTTGGGCAATTCATCTGGATAGATGGGTGTTACGGACTCGGAGGACTTC
GGATTAATGATAAGCCGAGGTCCACAGCCGGGAACCCACTTTTCTAAATT
GGGTATTATTCTGTTTCGTCGGCTTACATAGTTCTGCTTAATGAAGAACC
AGAGAGCGGGTAGATCCTGCGACTGGCACAGCTCATGAAGATTGCGGCGC
GGAGTGAATTTCACCAAGTACAAGTACTCGGGATTGATGGACTGCACCTT
ACCCAACTTGCTACTCTTGGTGGGGCTATAGGCCATCTGCTGAGGTAGAA
AATCCTCGCGCGGCACCTTGGCTATGAATTTGTGCTCAAACAGAATTTGA
AACAGTACGCTGGTCGATCGGTAAATGAGGTAGCCAATCTCGTTGTTGCA
GGTGAGATGTATGTATATGGGTGGCGGCATGGCGAGGATCATCTCACAGC
GTCCAAGGTTGAAAAGGCTGGTCTGAAAAATGAGGGAGTTGATCAAGTGC
TTGAAGAATGGATAGGAGCCCACGGCG

BO09911.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3910-PA 1359 mtTFB2-RA 498..1356 877..19 4295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB2-RA 1512 CG3910-RA 593..1451 877..19 4295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10046776..10047199 442..19 2120 100 Minus
3R 32079331 3R 10046398..10046714 759..443 1585 100 Minus
3R 32079331 3R 10046219..10046336 877..760 590 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:38:53 has no hits.

BO09911.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:41 Download gff for BO09911.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3910-PA 498..1359 18..877 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:22 Download gff for BO09911.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3910-PA 498..1359 18..877 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:28:06 Download gff for BO09911.3prime
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 593..1456 11..877 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:43 Download gff for BO09911.3prime
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 593..1456 11..877 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:43 Download gff for BO09911.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10046776..10047204 11..442 99   Minus
3R 10046219..10046336 760..877 100 -> Minus
3R 10046398..10046714 443..759 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:28:06 Download gff for BO09911.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5871941..5872058 760..877 100 -> Minus
arm_3R 5872120..5872436 443..759 100 -> Minus
arm_3R 5872498..5872926 11..442 99   Minus

BO09911.5prime Sequence

928 bp (718 high quality bases) assembled on 2006-04-19

> BO09911.5prime
GAAGTTATCAGTCGACATGCTGCCCCTGCGATGCAGTTGGTCCTTTGCCC
GGGCCAACTATAGCACCAAAAAGGAACTGGTGACTCGCTACAGCGGCGAT
TTCCCCGAGAAACTGCTCAACCGGAAGCAAAAGGTTCCCACTCACATGTA
CATTGCAAATTCGGAGGCTGCTGCAAGGATTAACCAGTACCTGGAGCCCC
ATTTCCAGAGCTCCGGTTGCGATACCGTGATGGAACTCAATTCCGGTGCT
GGGTACTTTACCCGGCATCTGTTGGACAGGGAATCCCAGTTTCGACGCAT
AATTCTGCTTGAGAGCATGGATCACTTTATGCCCAAAATCCAGGAGCTAC
ACACGCTATATCCGGAACGTGTGAAGGTGCGCCAAGGAGACTTTGTGAAC
CTGTGGAAGTTGGTGTACATGGACAAAATGGACGGTGGTTCCAGGGTGGC
GGATCTCCTGAGTGATGTGCCCCAGAAAGCGTTTACAGATGATATCAACA
TGCTAGTCTTCGGCGCCGTGGGCTCCTATCCATTCTTCAAGCACTTGATC
AACTCCCTCATTTTTCAGACCAGCCTTTTCAACCTTGGACGCTGTGAGAT
GATCCTCGCCATGCCGCCACCCATATACATACATCTCACCTGCAACAACG
AGATTGGCTACCTCATTTACCGATCGACCAGCGTACTGTTTCAAATTCTG
TTTGAGCACAAATTCATAGCCAAGGTGCCGCGCGAGGATTTTCTACCTCA
GCAGATGGCCTATAGCCCCACCAAGAGTAGCAAGTTGGGTAAGGTGCAGT
CCATCAATCCCGAGTACTTGTACTTGGTGAAATTCACTCCGCGCCGCAAT
CTTCATGAGCTGTGCCAGTCGCAGGATCTACCCGCTCTCTGGTTCTTCAT
TAAGCAGAACTATGTAAGCCGACAAAAC

BO09911.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3910-PA 1359 mtTFB2-RA 1..907 17..923 4535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB2-RA 1512 CG3910-RA 96..1007 17..928 4545 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10045669..10046143 17..491 2375 100 Plus
3R 32079331 3R 10046398..10046694 632..928 1470 99.7 Plus
3R 32079331 3R 10046196..10046336 491..631 705 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:54:36 has no hits.

BO09911.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:42 Download gff for BO09911.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3910-PA 1..912 17..928 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:23 Download gff for BO09911.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3910-PA 1..912 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:22:11 Download gff for BO09911.5prime
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 93..1007 14..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:17:31 Download gff for BO09911.5prime
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 93..1007 14..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:17:31 Download gff for BO09911.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10046398..10046694 632..928 99   Plus
3R 10045666..10046143 14..491 99 -> Plus
3R 10046197..10046336 492..631 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:22:11 Download gff for BO09911.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5871388..5871865 14..491 99 -> Plus
arm_3R 5871919..5872058 492..631 100 -> Plus
arm_3R 5872120..5872416 632..928 99   Plus

BO09911.complete Sequence

1390 bp (1390 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631610

> BO09911.complete
GAAGTTATCAGTCGACATGCTGCCCCTGCGATGCAGTTGGTCCTTTGCCC
GGGCCAACTATAGCACCAAAAAGGAACTGGTGACTCGCTACAGCGGCGAT
TTCCCCGAGAAACTGCTCAACCGGAAGCAAAAGGTTCCCACTCACATGTA
CATTGCAAATTCGGAGGCTGCTGCAAGGATTAACCAGTACCTGGAGCCCC
ATTTCCAGAGCTCCGGTTGCGATACCGTGATGGAACTCAATTCCGGTGCT
GGGTACTTTACCCGGCATCTGTTGGACAGGGAATCCCAGTTTCGACGCAT
AATTCTGCTTGAGAGCATGGATCACTTTATGCCCAAAATCCAGGAGCTAC
ACACGCTATATCCGGAACGTGTGAAGGTGCGCCAAGGAGACTTTGTGAAC
CTGTGGAAGTTGGTGTACATGGACAAAATGGACGGTGGTTCCAGGGTGGC
GGATCTCCTGAGTGATGTGCCCCAGAAAGCGTTTACAGATGATATCAACA
TGCTAGTCTTCGGCGCCGTGGGCTCCTATCCATTCTTCAAGCACTTGATC
AACTCCCTCATTTTTCAGACCAGCCTTTTCAACCTTGGACGCTGTGAGAT
GATCCTCGCCATGCCGCCACCCATATACATACATCTCACCTGCAACAACG
AGATTGGCTACCTCATTTACCGATCGACCAGCGTACTGTTTCAAATTCTG
TTTGAGCACAAATTCATAGCCAAGGTGCCGCGCGAGGATTTTCTACCTCA
GCAGATGGCCTATAGCCCCACCAAGAGTAGCAAGTTGGGTAAGGTGCAGT
CCATCAATCCCGAGTACTTGTACTTGGTGAAATTCACTCCGCGCCGCAAT
CTTCATGAGCTGTGCCAGTCGCAGGATCTACCCGCTCTCTGGTTCTTCAT
TAAGCAGAACTATGTAAGCCGACGAAACAGAATAATACCCAATTTAGAAA
AGTGGGTTCCCGGCTGTGGACCTCGGCTTATCATTAATCCGAAGTCCTCC
GAGTCCGTAACACCCATCTATCCAGATGAATTGCCCAAGAAACTACCACA
GTACTCGTGCCAGAGTACTACAATGAGCACCAGAAACTACTATCCCGGCA
TCAACATCTACACACAGTTCGGAGATCTCCTGCCCAGTCAGATTCTGACG
CTATTTAGTCAGTTTCGTCAGTGGCCGGAGTACGGCGAGAGCTCTTTCCT
CGCCTCGCTGGAAAATGCGCTGCTCAAGCTGGAGACTGCCAATGACGAAC
CAAACCTAGAGGATGGCGTCACGTTGCCAGAAGAGGATGATGCCGAAGCA
GATGAAATTATCGAAGAAGAAAGCCCTGTACCCGCCACCACTCCCGTCAA
GAGGCGCAGGAAAGCCAGTTCTGCAAGCTTTCTAGACCAT

BO09911.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB2-RA 1359 CG3910-PA 1..1356 17..1372 6780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB2-RA 1512 CG3910-RA 96..1451 17..1372 6780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10045669..10046143 17..491 2375 100 Plus
3R 32079331 3R 10046776..10047199 949..1372 2120 100 Plus
3R 32079331 3R 10046398..10046714 632..948 1585 100 Plus
3R 32079331 3R 10046196..10046336 491..631 705 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:04:43 has no hits.

BO09911.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:09 Download gff for BO09911.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 1..1359 17..1373 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:58 Download gff for BO09911.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 91..1454 14..1380 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:57 Download gff for BO09911.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 96..1451 17..1374 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:09 Download gff for BO09911.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 91..1454 14..1380 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:29 Download gff for BO09911.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 96..1451 17..1374 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:29 Download gff for BO09911.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10045669..10046143 17..491 100 -> Plus
3R 10046197..10046336 492..631 100 -> Plus
3R 10046398..10046714 632..948 100 -> Plus
3R 10046776..10047199 949..1374 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:57 Download gff for BO09911.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5871391..5871865 17..491 100 -> Plus
arm_3R 5871919..5872058 492..631 100 -> Plus
arm_3R 5872120..5872436 632..948 100 -> Plus
arm_3R 5872498..5872921 949..1374 99   Plus

BO09911.pep Sequence

Translation from 16 to 1390

> BO09911.pep
MLPLRCSWSFARANYSTKKELVTRYSGDFPEKLLNRKQKVPTHMYIANSE
AAARINQYLEPHFQSSGCDTVMELNSGAGYFTRHLLDRESQFRRIILLES
MDHFMPKIQELHTLYPERVKVRQGDFVNLWKLVYMDKMDGGSRVADLLSD
VPQKAFTDDINMLVFGAVGSYPFFKHLINSLIFQTSLFNLGRCEMILAMP
PPIYIHLTCNNEIGYLIYRSTSVLFQILFEHKFIAKVPREDFLPQQMAYS
PTKSSKLGKVQSINPEYLYLVKFTPRRNLHELCQSQDLPALWFFIKQNYV
SRRNRIIPNLEKWVPGCGPRLIINPKSSESVTPIYPDELPKKLPQYSCQS
TTMSTRNYYPGINIYTQFGDLLPSQILTLFSQFRQWPEYGESSFLASLEN
ALLKLETANDEPNLEDGVTLPEEDDAEADEIIEEESPVPATTPVKRRRKA
SSASFLDH

BO09911.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB2-PA 452 CG3910-PA 1..452 1..452 2381 100 Plus