Clone Sequence Records
BO09916.3prime Sequence
849 bp (805 high quality bases) assembled on 2006-04-19
> BO09916.3prime
ATGGTCTAGAAAGCTTGCTTCGGCCTTCTCGCCCATCTTGGCCTGAATCT
CGTTAAGCGTTTTTCCCTTTGTCTCGGGAATTAGGAAGAGAATGAAGACA
AAGGCGGCCACCGCAAATCCGAAGAAGATTGCAAAGCACGCGGTTGCTCC
AATAATATCGTTAAGAACAGGGAAAAGAAGGGTCACGATAAAAGCAAAAC
ACCAATTTGTAGTCCCGGCAATCGATCCTGCTAGGGCCTTTACATCCTCG
GCAAAGAGCTCGGCCATCATCAGCCAGGGAACTGGACCGAATCCCAGGGA
GAATCCAATAATAAAAACACAAACGGCAATTAGGGCCAGCCAGCCGACTC
CAGATTTCATCAACATGCCAAAGTAAAGAGCCATGATCAGGGTGCTGATA
CCCATCATGCAGGCGGACACCAATAGGAGTATCTTCCGACCGACTTTCTC
AATAACCAGGATCGAAATGATAGTGGCAATAGCCTGCACAATGCCCACAA
TAATTGTAGATATTCTGGGCTCCAGGGTCGATCCAGCCGTCTCAAAGATG
AATGTAGAATAGAAAATAATCGCATTGATGCCCGTCATCTGCTGGAACAA
CATGAGACCGATGGAGAGGAACAGCCCCTTGAGGGTAATCCTGCGGCATA
GGATTTTCCCAACGCTAGCCTTCTCCTTTTGGCCCTCGGCGCTCATTTCC
TTCAGCTCACCGCTCACATCCGCATCCTTTCCGCGCAGAAATTTAAGAGA
TTTCTCCGCCTTCTCGGCTTTTCCCTTTTGGGCCAGAAAAATCGGAGATT
CCGGCATAAAAATCATCAAGACAAAAAAGATTACGGGCAAAATTGCGCA
BO09916.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1380-PB | 1335 | sut4-RB | 502..1332 | 849..19 | 4155 | 100 | Minus |
| CG1380-PA | 1335 | sut4-RA | 502..1332 | 849..19 | 4155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut4-RA | 1686 | CG1380-RA | 666..1496 | 849..19 | 4155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10085632..10086462 | 19..849 | 4155 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:49:31 has no hits.
BO09916.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:51 Download gff for
BO09916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-PB | 503..1335 | 18..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:36 Download gff for
BO09916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1380-PA | 503..1335 | 18..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:13:58 Download gff for
BO09916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 667..1496 | 19..848 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:49 Download gff for
BO09916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 667..1496 | 19..848 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:49 Download gff for
BO09916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10085632..10086461 | 19..848 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:13:58 Download gff for
BO09916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5973137..5973966 | 19..848 | 100 | | Plus |
BO09916.5prime Sequence
931 bp (849 high quality bases) assembled on 2006-04-19
> BO09916.5prime
GAAGTTATCAGTCGACATGGGTACTGCCACTCAGTTTATTGTTGGTTTCA
TCGGCGCCCTGGGCGCCTTTTGTCTAGGCGCAGTGATCGGCTGGTCAGGA
CCGGTGGAAAATGAAGTCAAGAATTCTAACGCGTACAACTTTACCCCTCG
TCAAACGGAATGGGGCCTGGTGGGATCTCTGATGACTCTGGGTGCAGCTT
TCTCGTGCATTCCGGTGGGCGTGCTCATTGGTAAGATCGGGCGGAAGACG
ACAATGCTAATCCTGCTGCCACCGTTCTTTATCGGATGGCTCCTGATCCT
CCTGGCATCGCACATAGCAATGCTGCTGCTCGGACGCTTCGTAGTGGGAT
TCTGCGGAGGAGCCTTCTGCGTGACTTGTCCCATGTACGTGACTGAGATA
GCCCAGGTCCAGTACCGCGGAACCATGGGATGCTTCTTCCAGCTGCTAAT
CGTTTTTGGTATTCTGTACGCCTTTGTGGTTGGAGGTTTTGTAAAGACCT
TCTACTTTAATATTGCTTGCGCAATTTTGCCCGTAATCTTTTTTGTCTTG
ATGATTTTTATGCCGGAATCTCCGATTTTTCTGGCCCAAAAGGGAAAAGC
CGAGAAGGCGGAGAAATCTCTTAAATTTCTGCGCGGAAAGGATGCGGATG
TGAGCGGTGAGCTGAAGGAAATGAGCGCCGAGGGCCAAAAGGAGAAGGCT
AGCGTTGGGAAAATCCTATGCCGCAGGATTACCCTCAAGGGGCTGTTCCT
CTCCATCGGTCTCATGTTGTTCCAGCAGATGACGGGCATCAATGCGATTA
TTTTCTATTCTACATTCATCTTTGAGACGGCTGGATCGACCCTGGAGCCC
AGAATATCTACAATTATTGTGGGCATTGTGCAGGCTATTGCCACTATCAT
TTCGATCCTGGTTATTGAGAAAGTCGGTCGG
BO09916.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1380-PB | 1335 | sut4-RB | 1..915 | 17..931 | 4550 | 99.8 | Plus |
| CG1380-PA | 1335 | sut4-RA | 1..915 | 17..931 | 4550 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut4-RA | 1686 | CG1380-RA | 165..1079 | 17..931 | 4560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10086049..10086963 | 931..17 | 4560 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:12:54 has no hits.
BO09916.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:52 Download gff for
BO09916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-PB | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:38 Download gff for
BO09916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1380-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:38:34 Download gff for
BO09916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 159..1079 | 11..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:49:30 Download gff for
BO09916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 159..1079 | 11..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:49:30 Download gff for
BO09916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10086049..10086969 | 11..931 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:38:34 Download gff for
BO09916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5973554..5974474 | 11..931 | 99 | | Minus |
BO09916.complete Sequence
1366 bp assembled on 2008-08-15
GenBank Submission: FJ631612
> BO09916.complete
GAAGTTATCAGTCGACATGGGTACTGCCACTCAGTTTATTGTTGGTTTCA
TCGGCGCCCTGGGCGCCTTTTGTCTAGGCGCAGTGATCGGCTGGTCAGGA
CCGGTGGAAAATGAAGTCAAGAATTCTAACGCGTACAACTTTACCCCTCG
TCAAACGGAATGGGGCCTGGTGGGATCTCTGATGACTCTGGGTGCAGCTT
TCTCGTGCATTCCGGTGGGCGTGCTCATTGGTAAGATCGGGCGGAAGACG
ACAATGCTAATCCTGCTGCCACCGTTCTTTATCGGATGGCTCCTGATCCT
CCTGGCATCGCACATAGCAATGCTGCTGCTCGGACGCTTCGTAGTGGGAT
TCTGCGGAGGAGCCTTCTGCGTGACTTGTCCCATGTACGTGACTGAGATA
GCCCAGGTCCAGTACCGCGGAACCATGGGATGCTTCTTCCAGCTGCTAAT
CGTTTTTGGTATTCTGTACGCCTTTGTGGTTGGAGGTTTTGTAAAGACCT
TCTACTTTAATATTGCTTGCGCAATTTTGCCCGTAATCTTTTTTGTCTTG
ATGATTTTTATGCCGGAATCTCCGATTTTTCTGGCCCAAAAGGGAAAAGC
CGAGAAGGCGGAGAAATCTCTTAAATTTCTGCGCGGAAAGGATGCGGATG
TGAGCGGTGAGCTGAAGGAAATGAGCGCCGAGGGCCAAAAGGAGAAGGCT
AGCGTTGGGAAAATCCTATGCCGCAGGATTACCCTCAAGGGGCTGTTCCT
CTCCATCGGTCTCATGTTGTTCCAGCAGATGACGGGCATCAATGCGATTA
TTTTCTATTCTACATTCATCTTTGAGACGGCTGGATCGACCCTGGAGCCC
AGAATATCTACAATTATTGTGGGCATTGTGCAGGCTATTGCCACTATCAT
TTCGATCCTGGTTATTGAGAAAGTCGGTCGGAAGATACTCCTATTGGTGT
CCGCCTGCATGATGGGTATCAGCACCCTGATCATGGCTCTTTACTTTGGC
ATGTTGATGAAATCTGGAGTCGGCTGGCTGGCCCTAATTGCCGTTTGTGT
TTTTATTATTGGATTCTCCCTGGGATTCGGTCCAGTTCCCTGGCTGATGA
TGGCCGAGCTCTTTGCCGAGGATGTAAAGGCCCTAGCAGGATCGATTGCC
GGGACTACAAATTGGTGTTTTGCTTTTATCGTGACCCTTCTTTTCCCTGT
TCTTAACGATATTATTGGAGCAACCGCGTGCTTTGCAATCTTCTTCGGAT
TTGCGGTGGCCGCCTTTGTCTTCATTCTCTTCCTAATTCCCGAGACAAAG
GGAAAAACGCTTAACGAGATTCAGGCCAAGATGGGCGAGAAGGCCGAAGC
AAGCTTTCTAGACCAT
BO09916.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut4-RA | 1335 | CG1380-PA | 1..1332 | 17..1348 | 6645 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut4-RA | 1686 | CG1380-RA | 165..1496 | 17..1348 | 6645 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10085632..10086963 | 1348..17 | 6645 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:03:00 has no hits.
BO09916.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:25 Download gff for
BO09916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 96..1433 | 11..1348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:27 Download gff for
BO09916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 165..1496 | 17..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:26 Download gff for
BO09916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 102..1433 | 17..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:10 Download gff for
BO09916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 165..1496 | 17..1350 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:10 Download gff for
BO09916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10085630..10086963 | 17..1350 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:27 Download gff for
BO09916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5973135..5974468 | 17..1350 | 99 | | Minus |
BO09916.pep Sequence
Translation from 16 to 1366
> BO09916.pep
MGTATQFIVGFIGALGAFCLGAVIGWSGPVENEVKNSNAYNFTPRQTEWG
LVGSLMTLGAAFSCIPVGVLIGKIGRKTTMLILLPPFFIGWLLILLASHI
AMLLLGRFVVGFCGGAFCVTCPMYVTEIAQVQYRGTMGCFFQLLIVFGIL
YAFVVGGFVKTFYFNIACAILPVIFFVLMIFMPESPIFLAQKGKAEKAEK
SLKFLRGKDADVSGELKEMSAEGQKEKASVGKILCRRITLKGLFLSIGLM
LFQQMTGINAIIFYSTFIFETAGSTLEPRISTIIVGIVQAIATIISILVI
EKVGRKILLLVSACMMGISTLIMALYFGMLMKSGVGWLALIAVCVFIIGF
SLGFGPVPWLMMAELFAEDVKALAGSIAGTTNWCFAFIVTLLFPVLNDII
GATACFAIFFGFAVAAFVFILFLIPETKGKTLNEIQAKMGEKAEASFLDH
BO09916.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut4-PA | 444 | CG1380-PA | 1..444 | 1..444 | 2256 | 100 | Plus |
| CG6484-PA | 465 | CG6484-PA | 9..448 | 6..436 | 1210 | 51.8 | Plus |
| CG10960-PA | 471 | CG10960-PA | 15..457 | 6..439 | 1098 | 48.3 | Plus |
| CG10960-PC | 471 | CG10960-PC | 15..457 | 6..439 | 1098 | 48.3 | Plus |
| CG10960-PB | 539 | CG10960-PB | 83..525 | 6..439 | 1098 | 48.3 | Plus |
