Clone Sequence Records
BO09918.3prime Sequence
921 bp (854 high quality bases) assembled on 2006-04-19
> BO09918.3prime
ATGGTCTAGAAAGCTTGCATTTCCATTTCCCGCCCCATCTTTGGCCGCTG
CATATTGCAATCCCTTCAGCAGTGGCGAGTCCTCCACATCATTATTCTTC
ACAGGCTCCAACGAGCTATTCGTCTCGATGGAACTAATCTCGATCTTGTG
CATCAGGCTCTTCTGCCAGATCATTTGATGGGGATACCAGAATACCATCA
GCAAACCCAAGACCACGCCCAGGATGCCACAGATCTTGCCCACAAACTCA
AGGATCGGCATTAGCTTCACGTAGACCAGAAGATCATCCGTGATGCGGAC
ATTGTAATCCGCCCAGATCAACGGAAAGAATGTTCTTCTCGCCGTCCGGT
AAATTAAATGAGTTTTGGGCTCCACCAGCAAGTTGGCCATAATGCGCGCC
TTGATCTCCAGCACCATTCCCGTTTTGGGCTCCAACATAATGACCATCTC
GTGGCGATCCTTGTCGGGCTTCATGCCCTCCACCTGCTCTCCGTAGTAGG
GATCAGCTTTGAAGAAGTGCGGATACGAAGCAAAGACAGGCGTTCCATAC
CAACAGGAGGATATGTTGAGAAGACCGGATCTCACCTCCTGGCAGTTATC
CTGGCAATAGCAACTGTTATCCGGGTTATCAGTACCATTTGCCATATTGC
GTGCACTGCCTCTGTAAACGAAAGCATCGATGCCCTCGAAGATTGTGGTG
CCGGAGTAGTCCACCTGCAGCTCACGGCACAGATCCGGCAGGAAGTAGGA
GATGGGTCTGCCCTTTACCAGCGGTATTGGATGGAATTCTCCGGCGCTGC
CCTTCAACTTGCACCTGGGACTGGCCTCAGTGACATTGTTGTAGCGCCAC
CTGGCTATTTGACCCAGTTTTTGGACTCATCCCGTCCCGTGTACACATTG
TGATGCCCGTAGATTTCCATG
BO09918.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7227-PA | 1557 | CG7227-RA | 698..1554 | 875..19 | 4285 | 100 | Minus |
| CG7227-PA | 1557 | CG7227-RA | 651..697 | 921..875 | 235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7227-RC | 2578 | CG7227-RC | 1053..1956 | 921..19 | 4495 | 99.9 | Minus |
| CG7227-RB | 2128 | CG7227-RB | 1053..1956 | 921..19 | 4495 | 99.9 | Minus |
| CG7227-RA | 2270 | CG7227-RA | 1195..2098 | 921..19 | 4495 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7995010..7995346 | 19..355 | 1685 | 100 | Plus |
| 2L | 23513712 | 2L | 7995412..7995692 | 356..636 | 1405 | 100 | Plus |
| 2L | 23513712 | 2L | 7995753..7996042 | 633..921 | 1400 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:21:37 has no hits.
BO09918.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:55 Download gff for
BO09918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-PA | 651..1557 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:42 Download gff for
BO09918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-PA | 651..1557 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:17:31 Download gff for
BO09918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 1195..2106 | 10..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:54:50 Download gff for
BO09918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 1195..2106 | 10..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:54:50 Download gff for
BO09918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7995001..7995346 | 10..355 | 98 | <- | Plus |
| 2L | 7995412..7995691 | 356..635 | 100 | <- | Plus |
| 2L | 7995756..7996042 | 636..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:17:31 Download gff for
BO09918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7995001..7995346 | 10..355 | 98 | <- | Plus |
| arm_2L | 7995412..7995691 | 356..635 | 100 | <- | Plus |
| arm_2L | 7995756..7996042 | 636..921 | 99 | | Plus |
BO09918.5prime Sequence
858 bp (794 high quality bases) assembled on 2006-04-19
> BO09918.5prime
GAAGTTATCAGTCGACATGATTGGAAAACAGCGCATTTGGCAGACAAGTG
TGTTGGGTCTGCTTTTGGCCAGCTTCAGTCTGTTCTCCGTGCTCTATATG
GAGCAAATCGAACGCTGGATGCTGGAGTGGTTCATGGTGCTCCGCCCAGG
AACAATGATCAGCAGCCTGTGGCAGTCACCGGCCATGGACATAAACGTTG
ACCTGTACATATTCAACTGGACGAACTCGGAGAAGTTCAGTGATCCCACA
GTGAAGCCCAGGTTCGAGGAGCTTGGTCCGTATCGCTTCACCGAACGGAT
GCAGAAGGTCAATGTGGAGTGGCACGATGAGAACTCGACGGTTTCCTATC
GACGTCGCAGTCGATTCGATTTCGATCCGAAACTTAGTGTCGGACGTCCT
ACAGATCCCATTGTGGCGCCCAACCTGCTCATTGTGGGACTGTACCAGAA
GATGGTCATGTGGAGTCCCATGCTGCGTTCCCTCATGCTCTTGGCCCTGA
ATATCTACGGCAAGGAGCAGGCCATGATACGGCCAGCCAGCGATTGGATG
TTCGACGGCTTCGACACGCCGATGATCAAGATGAGCAAAATGGTGCCACC
AAGTCTTGTGCCGGAGATGAAGTTCCCCTATGAGAAGATCGGCTATGCGT
ATCCACGCAATGGCAGCATGGAAATCTACGGGCATCACAATGTGTACACG
GGACGGGATGAGTTCCAAAAACTGGGTCAAATAGCCAGGTGGCGCTACAA
CAATGTCACTGAGGCCAGTCCCAGGTGCAAGTTGAAGGGCAGCGCCGGAG
AATTCCATCCAATACCGCTGGTAAAGGGCAGACCCATCTCCTACTTCCCT
GCCGATCT
BO09918.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7227-PA | 1557 | CG7227-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7227-RC | 2578 | CG7227-RC | 402..1239 | 16..854 | 4170 | 99.9 | Plus |
| CG7227-RB | 2128 | CG7227-RB | 402..1239 | 16..854 | 4170 | 99.9 | Plus |
| CG7227-RA | 2270 | CG7227-RA | 544..1381 | 16..854 | 4170 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7996114..7996753 | 655..16 | 3200 | 100 | Minus |
| 2L | 23513712 | 2L | 7995861..7996053 | 848..656 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:16:13 has no hits.
BO09918.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:56 Download gff for
BO09918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:43 Download gff for
BO09918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:53 Download gff for
BO09918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 538..1386 | 9..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:51:57 Download gff for
BO09918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 538..1386 | 9..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:51:57 Download gff for
BO09918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7995851..7996053 | 656..858 | 99 | <- | Minus |
| 2L | 7996114..7996759 | 9..655 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:53 Download gff for
BO09918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7995851..7996053 | 656..858 | 99 | <- | Minus |
| arm_2L | 7996114..7996759 | 9..655 | 99 | | Minus |
BO09918.complete Sequence
1588 bp (1588 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631613
> BO09918.complete
GAAGTTATCAGTCGACATGATTGGAAAACAGCGCATTTGGCAGACAAGTG
TGTTGGGTCTGCTTTTGGCCAGCTTCAGTCTGTTCTCCGTGCTCTATATG
GAGCAAATCGAACGCTGGATGCTGGAGTGGTTCATGGTGCTCCGCCCAGG
AACAATGATCAGCAGCCTGTGGCAGTCACCGGCCATGGACATAAACGTTG
ACCTGTACATATTCAACTGGACGAACTCGGAGAAGTTCAGTGATCCCACA
GTGAAGCCCAGGTTCGAGGAGCTTGGTCCGTATCGCTTCACCGAACGGAT
GCAGAAGGTCAATGTGGAGTGGCACGATGAGAACTCGACGGTTTCCTATC
GACGTCGCAGTCGATTCGATTTCGATCCGAAACTTAGTGTCGGACGTCCT
ACAGATCCCATTGTGGCGCCCAACCTGCTCATTGTGGGACTGTACCAGAA
GATGGTCATGTGGAGTCCCATGCTGCGTTCCCTCATGCTCTTGGCCCTGA
ATATCTACGGCAAGGAGCAGGCCATGATACGGCCAGCCAGCGATTGGATG
TTCGACGGCTTCGACACGCCGATGATCAAGATGAGCAAAATGGTGCCACC
AAGTCTTGTGCCGGAGATGAAGTTCCCCTATGAGAAGATCGGCTATGCGT
ATCCACGCAATGGCAGCATGGAAATCTACGGGCATCACAATGTGTACACG
GGACGGGATGAGTTCCAAAAACTGGGTCAAATAGCCAGGTGGCGCTACAA
CAATGTCACTGAGGCCAGTCCCAGGTGCAAGTTGAAGGGCAGCGCCGGAG
AATTCCATCCAATACCGCTGGTAAAGGGCAGACCCATCTCCTACTTCCTG
CCGGATCTGTGCCGTGAGCTGCAGGTGGACTACTCCGGCACCACAATCTT
CGAGGGCATCGATGCTTTCGTTTACAGAGGCAGTGCACGCAATATGGCAA
ATGGTACTGATAACCCGGATAACAGTTGCTATTGCCAGGATAACTGCCAG
GAGGTGAGATCCGGTCTTCTCAACATATCCTCCTGTTGGTATGGAACGCC
TGTCTTTGCTTCGTATCCGCACTTCTTCAAAGCTGATCCCTACTACGGAG
AGCAGGTGGAGGGCATGAAGCCCGACAAGGATCGCCACGAGATGGTCATT
ATGTTGGAGCCCAAAACGGGAATGGTGCTGGAGATCAAGGCGCGCATTAT
GGCCAACTTGCTGGTGGAGCCCAAAACTCATTTAATTTACCGGACGGCGA
GAAGAACATTCTTTCCGTTGATCTGGGCGGATTACAATGTCCGCATCACG
GATGATCTTCTGGTCTACGTGAAGCTAATGCCGATCCTTGAGTTTGTGGG
CAAGATCTGTGGCATCCTGGGCGTGGTCTTGGGTTTGCTGATGGTATTCT
GGTATCCCCATCAAATGATCTGGCAGAAGAGCCTGATGCACAAGATCGAG
ATTAGTTCCATCGAGACGAATAGCTCGTTGGAGCCTGTGAAGAATAATGA
TGTGGAGGACTCGCCACTGCTGAAGGGATTGCAATATGCAGCGGCCAAAG
ATGGGGCGGGAAATGGAAATGCAAGCTTTCTAGACCAT
BO09918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7227-RC | 1557 | CG7227-PC | 1..1554 | 17..1570 | 7770 | 100 | Plus |
| CG7227-RB | 1557 | CG7227-PB | 1..1554 | 17..1570 | 7770 | 100 | Plus |
| CG7227-RA | 1557 | CG7227-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7227-RC | 2578 | CG7227-RC | 402..1956 | 16..1570 | 7775 | 100 | Plus |
| CG7227-RB | 2128 | CG7227-RB | 402..1956 | 16..1570 | 7775 | 100 | Plus |
| CG7227-RA | 2270 | CG7227-RA | 544..2098 | 16..1570 | 7775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:19:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7996114..7996753 | 655..16 | 3200 | 100 | Minus |
| 2L | 23513712 | 2L | 7995010..7995346 | 1570..1234 | 1685 | 100 | Minus |
| 2L | 23513712 | 2L | 7995753..7996053 | 956..656 | 1505 | 100 | Minus |
| 2L | 23513712 | 2L | 7995412..7995692 | 1233..953 | 1405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:19:04 has no hits.
BO09918.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:41 Download gff for
BO09918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 1..1557 | 17..1574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:25 Download gff for
BO09918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 531..2099 | 9..1579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:16 Download gff for
BO09918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 545..2098 | 17..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:42 Download gff for
BO09918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 526..2094 | 9..1579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:46 Download gff for
BO09918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 545..2098 | 17..1572 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:46 Download gff for
BO09918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7995756..7996053 | 656..953 | 100 | <- | Minus |
| 2L | 7995008..7995346 | 1234..1572 | 99 | <- | Minus |
| 2L | 7995412..7995691 | 954..1233 | 100 | <- | Minus |
| 2L | 7996114..7996752 | 17..655 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:16 Download gff for
BO09918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7995008..7995346 | 1234..1572 | 99 | <- | Minus |
| arm_2L | 7995412..7995691 | 954..1233 | 100 | <- | Minus |
| arm_2L | 7995756..7996053 | 656..953 | 100 | <- | Minus |
| arm_2L | 7996114..7996752 | 17..655 | 100 | | Minus |
BO09918.pep Sequence
Translation from 16 to 1588
> BO09918.pep
MIGKQRIWQTSVLGLLLASFSLFSVLYMEQIERWMLEWFMVLRPGTMISS
LWQSPAMDINVDLYIFNWTNSEKFSDPTVKPRFEELGPYRFTERMQKVNV
EWHDENSTVSYRRRSRFDFDPKLSVGRPTDPIVAPNLLIVGLYQKMVMWS
PMLRSLMLLALNIYGKEQAMIRPASDWMFDGFDTPMIKMSKMVPPSLVPE
MKFPYEKIGYAYPRNGSMEIYGHHNVYTGRDEFQKLGQIARWRYNNVTEA
SPRCKLKGSAGEFHPIPLVKGRPISYFLPDLCRELQVDYSGTTIFEGIDA
FVYRGSARNMANGTDNPDNSCYCQDNCQEVRSGLLNISSCWYGTPVFASY
PHFFKADPYYGEQVEGMKPDKDRHEMVIMLEPKTGMVLEIKARIMANLLV
EPKTHLIYRTARRTFFPLIWADYNVRITDDLLVYVKLMPILEFVGKICGI
LGVVLGLLMVFWYPHQMIWQKSLMHKIEISSIETNSSLEPVKNNDVEDSP
LLKGLQYAAAKDGAGNGNASFLDH
BO09918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7227-PC | 518 | CG7227-PC | 1..518 | 1..518 | 2776 | 100 | Plus |
| CG7227-PB | 518 | CG7227-PB | 1..518 | 1..518 | 2776 | 100 | Plus |
| CG7227-PA | 518 | CG7227-PA | 1..518 | 1..518 | 2776 | 100 | Plus |
| santa-maria-PC | 563 | CG12789-PC | 21..477 | 12..468 | 942 | 39.3 | Plus |
| santa-maria-PA | 563 | CG12789-PA | 21..477 | 12..468 | 942 | 39.3 | Plus |
