Clone Sequence Records
BO09919.3prime Sequence
943 bp (832 high quality bases) assembled on 2006-04-19
> BO09919.3prime
ATGGTCTAGAAAGCTTGCGTTTGGGCGCTGCACGGTGCGGTTCTCGTGGC
GGATGTTCACGTCCACGATGCTCATGTTGGGCGTGAGGAAGTTAACCAGG
CGGTCGACTCCGCTGCGGGGCAACCTGTCGAAGGGGAATCCCATGGACTG
GCGATCCGGGTAAAGACGGTCACGGACGCCACAGTAGGAAGCGGCATCGC
TGCACCGACCCACCAATTGCTGGTCAATCCTGTCGTTCTCATAGTTCGAC
ACCATGATGAACAGCACGCACTGCAGTCCCTCGGGCAGACCCTTTGGCAC
CAGCATGTGGTTGGGCCAGCCGCAGCCGCAGAAGTTGAACTCCAGCTCCT
CCGGAGTGCCGGCCGCCGGACGATTGGCATCCAGGTTGCGGAAGGTGCGC
TCGAACGGAATGGTCACGCTCGACTCCGTGGAGCGGCGGCGGATGGTGTT
GGGTCCCGGGTTCAGCGAAGTCACGAACTTGTCCAGCTCGATCATCATGG
AGCGCTGATCTCGCATCAGCATGGGCTGGCCACGCTCGTCGTTCTTCGGC
GCCATGAAGATGCGCACGTAGCCGAAACGCTGGGCACCACTATCGTTGTT
CAAACTGATGGTATAGGTGAAGGGCAGATGCTGCAGGTGGGTGAACCTGG
CGAAGACATTACCTCGCGGCAGGAAGTCGAAGCCACGGGACATGTCCACG
TCCGACTGCTGCCAGAAGGTGGTCAGATTATTGGGACGACCTCCATTGGT
GTCCACCTGGATGCCCGCGATCGAGACGCCCGGGTAGTTTAGTTGGTTCT
CGGTATAGGCGGGCAGGCGCGACTTGTGCTCCTGGAAGATGCGGTCGATG
TACGAGTGCCACTTGTAGAAGACCGGGTCGCGCATGGCCGTGGACACATC
ACCCATCACGCCAAAGGACTCCAGGTGCTTGCTGGGTCGGATC
BO09919.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8193-PA | 2055 | CG8193-RA | 1136..2052 | 935..19 | 4585 | 100 | Minus |
| CG2952-PA | 2052 | Dox-A3-RA | 1638..1691 | 433..380 | 220 | 96.2 | Minus |
| CG2952-PA | 2052 | Dox-A3-RA | 1345..1389 | 726..682 | 150 | 93.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPO2-RA | 2280 | CG8193-RA | 1218..2141 | 943..19 | 4600 | 99.9 | Minus |
| PPO3-RA | 2228 | CG42640-RA | 1192..2080 | 943..33 | 770 | 74 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9042666..9043372 | 229..935 | 3535 | 100 | Plus |
| 2R | 25286936 | 2R | 9042400..9042610 | 19..229 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 23066092..23066644 | 935..380 | 495 | 73 | Minus |
| 2R | 25286936 | 2R | 23066873..23067035 | 195..33 | 245 | 76.7 | Minus |
| 2R | 25286936 | 2R | 23066651..23066761 | 352..242 | 225 | 80.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:27:23 has no hits.
BO09919.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:58 Download gff for
BO09919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8193-PA | 1129..2055 | 18..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:45 Download gff for
BO09919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8193-PA | 1129..2055 | 18..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:18:11 Download gff for
BO09919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| proPO45-RA | 1218..2141 | 19..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:27:48 Download gff for
BO09919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPO2-RA | 1218..2141 | 19..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:27:48 Download gff for
BO09919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9042400..9042609 | 19..228 | 100 | <- | Plus |
| 2R | 9042666..9043379 | 229..943 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:18:11 Download gff for
BO09919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4929905..4930114 | 19..228 | 100 | <- | Plus |
| arm_2R | 4930171..4930884 | 229..943 | 99 | | Plus |
BO09919.5prime Sequence
942 bp (830 high quality bases) assembled on 2006-04-19
> BO09919.5prime
GAAGTTATCAGTCGACATGGCCGACAAGAAGAATCTCCTCCTGCTTTTCG
ACCATCCCACCGAGCCAGTGTTCATGGACAAGGGCAAGAGGGTGACCGTG
TTCGATGTGCCCGACTCCTTCCTGACCGACCGCTACCGACCCATCAGCAA
CGAGGTGCAGAGCCGCGTCGGCGACAAGGTGGAGCAGCGCGTTCCAGTCC
GGGAGATCTCCATTCCCGATCTGCGGATCCCCATGTCCCTGGGCCGGGAC
GAGCAGTTCTCGCTGTTCCTGCCCAAGCACCGCAGGATCGCCGGCCGCCT
GATCGATATATTCATGAACATGCGCTCCGTGGACGACCTGCAGAGCGTGG
CGGTGTACGCCAGGGATCGGGTCAACCCGGTGCTCTTCAACTACGCCTTG
TCGGTGGCGCTGCTCCATCGTCCGGACACCCAGGGCCTGGATCTGCCATC
CTTCTCGCAGACTTTCCCCGACCGCTTCATCGACTCGCAGGTGATCCGCA
AGATGCGGGAGGAGTCTTTTGTGGTGCAGCCCGGTTCCCGGATGCCCATC
ACCATTCCCAGGGACTACACCGCCTCCGATCTGGATCCCGAGCACCGGCT
GTGGTACTTCCGCGAGGATCTGGGCATCAACCTTCACCACTGGCATTGGC
ATCTGGTCTACCCCTTCGAGGCCTCCGACCGCAGCATAGTGGCCAAGGAT
CGTCGTGGCGAGCTCTTCTACTACATGCACCAGCAGGTGATCGCCCGCTA
CAATGCGGAGCGGTTCAGCAACAACCTGGCCAGGGTTCTGCCCTTCAACA
ACCTGAGGGATCCCATTGCCGAGGGCTACTTCCTCAAGATGGACTCTCTG
GTAGCCAGCCGCGCGTGGCCACCGCGCTTCGAGAGCACCAGGTTGAGCGA
TCTCAACCGGGAGTCCGACCAGCTGAATGTGGAGATTGGAGA
BO09919.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8193-PA | 2055 | CG8193-RA | 1..926 | 17..942 | 4605 | 99.8 | Plus |
| CG2952-PA | 2052 | Dox-A3-RA | 311..414 | 327..430 | 370 | 94.2 | Plus |
| CG2952-PA | 2052 | Dox-A3-RA | 577..647 | 590..660 | 255 | 94.3 | Plus |
| CG2952-PA | 2052 | Dox-A3-RA | 662..792 | 675..805 | 230 | 87 | Plus |
| CG5779-PA | 2073 | Bc-RA | 687..725 | 694..732 | 195 | 100 | Plus |
| CG2952-PA | 2052 | Dox-A3-RA | 1..68 | 17..84 | 190 | 91.1 | Plus |
| CG2952-PA | 2052 | Dox-A3-RA | 802..845 | 815..858 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPO2-RA | 2280 | CG8193-RA | 90..1015 | 17..942 | 4615 | 99.9 | Plus |
| PPO3-RA | 2228 | CG42640-RA | 61..948 | 17..901 | 1790 | 80.3 | Plus |
| PPO1-RA | 2338 | CG42639-RA | 760..906 | 694..840 | 315 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9043695..9044620 | 942..17 | 4615 | 99.9 | Minus |
| 2R | 25286936 | 2R | 23064829..23065716 | 17..901 | 1765 | 80.2 | Plus |
| 2R | 25286936 | 2R | 17888942..17889088 | 840..694 | 315 | 81 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:24:00 has no hits.
BO09919.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:24:59 Download gff for
BO09919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8193-PA | 1..925 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:46 Download gff for
BO09919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8193-PA | 1..925 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:20:15 Download gff for
BO09919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| proPO45-RA | 82..1014 | 9..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:43:26 Download gff for
BO09919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPO2-RA | 82..1014 | 9..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:43:26 Download gff for
BO09919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9043696..9044628 | 9..941 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:20:15 Download gff for
BO09919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4931201..4932133 | 9..941 | 99 | | Minus |
BO09919.complete Sequence
2086 bp (2086 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631614
> BO09919.complete
GAAGTTATCAGTCGACATGGCCGACAAGAAGAATCTCCTCCTGCTTTTCG
ACCATCCCACCGAGCCAGTGTTCATGGACAAGGGCAAGAGGGTGACCGTG
TTCGATGTGCCCGACTCCTTCCTGACCGACCGCTACCGACCCATCAGCAA
CGAGGTGCAGAGCCGCGTCGGCGACAAGGTGGAGCAGCGCGTTCCAGTCC
GGGAGATCTCCATTCCCGATCTGCGGATCCCCATGTCCCTGGGCCGGGAC
GAGCAGTTCTCGCTGTTCCTGCCCAAGCACCGCAGGATCGCCGGCCGCCT
GATCGATATATTCATGAACATGCGCTCCGTGGACGACCTGCAGAGCGTGG
CGGTGTACGCCAGGGATCGGGTCAACCCGGTGCTCTTCAACTACGCCTTG
TCGGTGGCGCTGCTCCATCGTCCGGACACCCAGGGCCTGGATCTGCCATC
CTTCTCGCAGACTTTCCCCGACCGCTTCATCGACTCGCAGGTGATCCGCA
AGATGCGGGAGGAGTCTTTTGTGGTGCAGCCCGGTTCCCGGATGCCCATC
ACCATTCCCAGGGACTACACCGCCTCCGATCTGGATCCCGAGCACCGGCT
GTGGTACTTCCGCGAGGATCTGGGCATCAACCTTCACCACTGGCATTGGC
ATCTGGTCTACCCCTTCGAGGCCTCCGACCGCAGCATAGTGGCCAAGGAT
CGTCGTGGCGAGCTCTTCTACTACATGCACCAGCAGGTGATCGCCCGCTA
CAATGCGGAGCGGTTCAGCAACAACCTGGCCAGGGTTCTGCCCTTCAACA
ACCTGAGGGATCCCATTGCCGAGGGCTACTTCCCCAAGATGGACTCTCTG
GTAGCCAGCCGCGCGTGGCCACCGCGCTTCGAGAGCACCAGGTTGAGCGA
TCTCAACCGGGAGTCCGACCAGCTGAATGTGGAGATTGGAGATCTGGAGC
GTTGGCGTGATCGCATCTACGAGGCCATTCACCAAGGATTTGTCATGGAT
GAGCGTGGCAACCGGGTGCCATTGGATGAGGCGACGGGCATTGATACCCT
CGGCAACATGATTGAATCATCCATTCTGTCGCCCAACCGAGTGCTGTATG
GTGACCTGCACAACAACGGACACACCTTCATCTCGTACGCCCACGATCCG
ACCAGCAAGCACCTGGAGTCCTTTGGCGTGATGGGTGATGTGTCCACGGC
CATGCGCGACCCGGTCTTCTACAAGTGGCACTCGTACATCGACCGCATCT
TCCAGGAGCACAAGTCGCGCCTGCCCGCCTATACCGAGAACCAACTAAAC
TACCCGGGCGTCTCGATCGCGGGCATCCAGGTGGACACCAATGGAGGTCG
TCCCAATAATCTGACCACCTTCTGGCAGCAGTCGGACGTGGACATGTCCC
GTGGCTTCGACTTCCTGCCGCGAGGTAATGTCTTCGCCAGGTTCACCCAC
CTGCAGCATCTGCCCTTCACCTATACCATCAGTTTGAACAACGATAGTGG
TGCCCAGCGTTTCGGCTACGTGCGCATCTTCATGGCGCCGAAGAACGACG
AGCGTGGCCAGCCCATGCTGATGCGAGATCAGCGCTCCATGATGATCGAG
CTGGACAAGTTCGTGACTTCGCTGAACCCGGGACCCAACACCATCCGCCG
CCGCTCCACGGAGTCGAGCGTGACCATTCCGTTCGAGCGCACCTTCCGCA
ACCTGGATGCCAATCGTCCGGCGGCCGGCACTCCGGAGGAGCTGGAGTTC
AACTTCTGCGGCTGCGGCTGGCCCAACCACATGCTGGTGCCAAAGGGTCT
GCCCGAGGGACTGCAGTGCGTGCTGTTCATCATGGTGTCGAACTATGAGA
ACGACAGGATTGACCAGCAATTGGTGGGTCGGTGCAGCGATGCCGCTTCC
TACTGTGGCGTCCGTGACCGTCTTTACCCGGATCGCCAGTCCATGGGATT
CCCCTTCGACAGGTTGCCCCGCAGCGGAGTCGACCGCCTGGTTAACTTCC
TCACGCCCAACATGAGCATCGTGGACGTGAACATCCGCCACGAGAACCGC
ACCGTGCAGCGCCCAAACGCAAGCTTTCTAGACCAT
BO09919.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPO2-RA | 2055 | CG8193-PA | 1..2052 | 17..2068 | 10260 | 100 | Plus |
| PPO3-RA | 2052 | CG42640-PA | 1..2020 | 17..2054 | 2340 | 74.8 | Plus |
| PPO1-RA | 2073 | CG42639-PA | 687..833 | 694..840 | 330 | 81.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPO2-RA | 2280 | CG8193-RA | 90..2141 | 17..2068 | 10260 | 100 | Plus |
| PPO3-RA | 2228 | CG42640-RA | 61..2080 | 17..2054 | 2340 | 74.8 | Plus |
| PPO1-RA | 2338 | CG42639-RA | 760..906 | 694..840 | 330 | 81.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9043636..9044620 | 1001..17 | 4925 | 100 | Minus |
| 2R | 25286936 | 2R | 9042666..9043428 | 1858..1096 | 3815 | 100 | Minus |
| 2R | 25286936 | 2R | 23064829..23065793 | 17..978 | 1820 | 79.5 | Plus |
| 2R | 25286936 | 2R | 9042400..9042610 | 2068..1858 | 1055 | 100 | Minus |
| 2R | 25286936 | 2R | 23066082..23066644 | 1142..1707 | 545 | 73.5 | Plus |
| 2R | 25286936 | 2R | 9043486..9043581 | 1096..1001 | 480 | 100 | Minus |
| 2R | 25286936 | 2R | 17888942..17889088 | 840..694 | 330 | 81.6 | Minus |
| 2R | 25286936 | 2R | 23066873..23067035 | 1892..2054 | 245 | 76.7 | Plus |
| 2R | 25286936 | 2R | 23066651..23066761 | 1735..1845 | 225 | 80.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:24:29 has no hits.
BO09919.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:43 Download gff for
BO09919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8193-RA | 1..2055 | 17..2069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:27 Download gff for
BO09919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8193-RA | 81..2140 | 9..2068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:05 Download gff for
BO09919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| proPO45-RA | 90..2141 | 17..2070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:43 Download gff for
BO09919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8193-RA | 81..2140 | 9..2068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:21 Download gff for
BO09919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPO2-RA | 90..2141 | 17..2070 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:21 Download gff for
BO09919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9042398..9042609 | 1859..2070 | 99 | <- | Minus |
| 2R | 9042666..9043427 | 1097..1858 | 100 | <- | Minus |
| 2R | 9043486..9043581 | 1001..1096 | 100 | <- | Minus |
| 2R | 9043637..9044620 | 17..1000 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:05 Download gff for
BO09919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4929903..4930114 | 1859..2070 | 99 | <- | Minus |
| arm_2R | 4930171..4930932 | 1097..1858 | 100 | <- | Minus |
| arm_2R | 4930991..4931086 | 1001..1096 | 100 | <- | Minus |
| arm_2R | 4931142..4932125 | 17..1000 | 100 | | Minus |
BO09919.pep Sequence
Translation from 16 to 2086
> BO09919.pep
MADKKNLLLLFDHPTEPVFMDKGKRVTVFDVPDSFLTDRYRPISNEVQSR
VGDKVEQRVPVREISIPDLRIPMSLGRDEQFSLFLPKHRRIAGRLIDIFM
NMRSVDDLQSVAVYARDRVNPVLFNYALSVALLHRPDTQGLDLPSFSQTF
PDRFIDSQVIRKMREESFVVQPGSRMPITIPRDYTASDLDPEHRLWYFRE
DLGINLHHWHWHLVYPFEASDRSIVAKDRRGELFYYMHQQVIARYNAERF
SNNLARVLPFNNLRDPIAEGYFPKMDSLVASRAWPPRFESTRLSDLNRES
DQLNVEIGDLERWRDRIYEAIHQGFVMDERGNRVPLDEATGIDTLGNMIE
SSILSPNRVLYGDLHNNGHTFISYAHDPTSKHLESFGVMGDVSTAMRDPV
FYKWHSYIDRIFQEHKSRLPAYTENQLNYPGVSIAGIQVDTNGGRPNNLT
TFWQQSDVDMSRGFDFLPRGNVFARFTHLQHLPFTYTISLNNDSGAQRFG
YVRIFMAPKNDERGQPMLMRDQRSMMIELDKFVTSLNPGPNTIRRRSTES
SVTIPFERTFRNLDANRPAAGTPEELEFNFCGCGWPNHMLVPKGLPEGLQ
CVLFIMVSNYENDRIDQQLVGRCSDAASYCGVRDRLYPDRQSMGFPFDRL
PRSGVDRLVNFLTPNMSIVDVNIRHENRTVQRPNASFLDH
BO09919.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPO2-PA | 684 | CG8193-PA | 1..684 | 1..684 | 3639 | 100 | Plus |
| PPO3-PA | 683 | CG2952-PA | 1..673 | 1..679 | 2472 | 68 | Plus |
| PPO1-PA | 690 | CG42639-PA | 5..689 | 3..682 | 1762 | 49.3 | Plus |
| Lsp2-PB | 701 | CG6806-PB | 94..695 | 78..677 | 527 | 27.9 | Plus |
| Lsp2-PA | 701 | CG6806-PA | 94..695 | 78..677 | 527 | 27.9 | Plus |
