Clone BO09923 Report

Search the DGRC for BO09923

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:99
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG11334-RA
Protein status:BO09923.pep: validated full length
Sequenced Size:1126

Clone Sequence Records

BO09923.3prime Sequence

892 bp (848 high quality bases) assembled on 2006-04-19

> BO09923.3prime
ATGGTCTAGAAAGCTTGCGGACTCTAGCAACTTAGTGATGGCCTCTTTCA
GTTCCGCCGGCTTGAAGACACCGCGTTCCGTGATGATGCCTGTGATCAGA
GAGGCAGGGGTCACATCGAAGGCGGGGTTCCAGCAGTTAATGCCCGGGGC
AGCGATGCGGTGCTCTCCCACGTGCGTCATTTCCCGGTCGGGACGCTCCT
CAATGATGATGTGATCGCCTCCGGGAATCGCTAGATCGATGGAAGTCAGA
GGGGCGGCTACGTAAAATGGCACGTCGTGGTGCTTGGCAACCACGGCAAT
CTGGTAGGTACCAATCTTGTTGGCCGTGTCGCCATTGGAGGCCACACGAT
CTGCTCCTACAACCACAGCAGCCACATTTTTGGCCCGCAGCAGAGCCGCC
ACCATGCTATCCAGAACCAGAGTGGCGGGGAATTTCTCGTGGACCAGTTC
GTAGGCTGTGAGGCGGGCTCCCTGATTGTAAGGACGAGTCTCTGTGCAAT
AAACGTGCTCCAGTTTTCCCAGCTCGGCCAGTTGGCGGACCACTCCCAGA
GCTGTACCGTACCCGGCGGTGGCCAGGGAACCCGTGTTGCAGTGGGTAAG
CACCCGGACGGATCCCGTCGATCCAGCGGGCGCTTTACCTGCCTTCGCCA
CGCCCTGTAGGATCGCCTGGGCTCCATTCGCTCCAATGGCACGGTTATCG
GCAATGTCTTTTTTTAGCATAGCTTCGGTCGCGTCCAGAAATCTATGCTT
CATTTGGGTCACGTCGATTGCCTCGTCCTTGTAAAGTTCGTTGGCCAGGG
TGATGAGCTCGTCGGCTGCGATCTTCATGTTGACCGCCGTANGCCTGGCG
GAAACCAAATAGTTCAACTTTCCCTCAATCTCCCTGCGCAGT

BO09923.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11334-PA 1095 CG11334-RA 228..1092 883..19 4306 99.8 Minus
CG11334-PB 1095 CG11334-RB 228..1092 883..19 4306 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11334-RC 1380 CG11334-RC 323..1187 883..19 4314 99.9 Minus
CG11334-RB 1452 CG11334-RB 395..1259 883..19 4314 99.9 Minus
CG11334-RA 1516 CG11334-RA 459..1323 883..19 4314 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31460015..31460341 19..345 1635 100 Plus
3R 32079331 3R 31460630..31460864 510..744 1175 100 Plus
3R 32079331 3R 31460398..31460564 344..510 835 100 Plus
3R 32079331 3R 31460921..31461061 743..883 694 99.3 Plus
Blast to na_te.dros performed 2015-02-12 03:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 3833..3877 795..839 117 73.3 Plus

BO09923.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:06 Download gff for BO09923.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11334-PB 219..1095 15..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:56 Download gff for BO09923.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11334-PB 219..1095 15..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:13:55 Download gff for BO09923.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11334-RA 450..1326 15..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:44 Download gff for BO09923.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11334-RA 450..1326 15..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:44 Download gff for BO09923.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31460012..31460341 15..345 99 <- Plus
3R 31460400..31460563 346..509 100 <- Plus
3R 31460630..31460862 510..742 100 <- Plus
3R 31460921..31461070 743..892 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:13:55 Download gff for BO09923.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27286122..27286285 346..509 100 <- Plus
arm_3R 27286352..27286584 510..742 100 <- Plus
arm_3R 27286643..27286792 743..892 98   Plus
arm_3R 27285734..27286063 15..345 99 <- Plus

BO09923.5prime Sequence

925 bp (867 high quality bases) assembled on 2006-04-19

> BO09923.5prime
GAAGTTATCAGTCGACATGAGCCTGCAGTCGATCAAGTACTCGCGGGGCA
GCCTGGAGATCCTCGACCAGCTGCTCCTGCCCGGTCAGTCAAAGTACGTG
GTGGTGCGAGGAGTGGAGGATGGCTGGAAGGTCATCAACAAGATGCAGGT
GCGTGGTGCTCCGGCCATCGCTATCGTTGGCTGCCTCTCCCTGGCCGTGG
AAATCAACCCGGAGGATTTTGAGAACAAGAAATCACTGCGGCAGGAGATT
GAGGGAAAGTTGAACTATTTGGTTTCCGCCAGGCCTACGGCGGTCAACAT
GAAGATCGCAGCCGACGAGCTCATCACCCTGGCCAACGAACTTTACAAGG
ACGAGGCAATCGACGTGACCCAAATGAAGCATAGATTTCTGGACGCGACC
GAAGCTATGCTAAAAAAAGACATTGCCGATAACCGTGCCATTGGAGCGAA
TGGAGCCCAGGCGATCCTACAGGGCGTGGCGAAGGCAGGTAAAGCGCCCG
CTGGATCGACGGGATCCGTCCGGGTGCTTACCCACTGCAACACGGGTTCC
CTGGCCACCGCCGGGTACGGTACAGCTCTGGGAGTGGTCCGCCAACTGGC
CGAGCTGGGAAAACTGGAGCACGTTTATTGCACAGAGACTCGTCCTTACA
ATCAGGGAGCCCGCCTCACAGCCTACGAACTGGTCCACGAGAAATTCCCC
GCCACTCTGGTTCTGGATAGCATGGTGGCGGCTCTGCTGCGGGCCAAAAA
TGTGGCTGCTGTGGTTGTAGGAGCAGATCGTGTGGCCTCCAATGGCGACA
CGGCCAACAAGATTGGTACCTACCAGATTGCCGTGGTTGCCAAGCACCAC
GACGTGCCATTTTACGTAGCCGCCCCTCTGACTTCCATCGATCTAGCGAT
TCCGGGAGGCGATCACATCATCATT

BO09923.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11334-PA 1095 CG11334-RA 1..909 17..925 4520 99.8 Plus
CG11334-PB 1095 CG11334-RB 1..909 17..925 4520 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11334-RC 1380 CG11334-RC 96..1004 17..925 4530 99.9 Plus
CG11334-RB 1452 CG11334-RB 168..1076 17..925 4530 99.9 Plus
CG11334-RA 1516 CG11334-RA 232..1140 17..925 4530 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31460921..31461158 384..147 1190 100 Minus
3R 32079331 3R 31460630..31460864 617..383 1175 100 Minus
3R 32079331 3R 31460398..31460564 783..617 835 100 Minus
3R 32079331 3R 31460198..31460341 925..782 705 99.3 Minus
3R 32079331 3R 31461811..31461945 151..17 675 100 Minus
Blast to na_te.dros performed 2015-02-10 20:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 3833..3877 332..288 117 73.3 Minus

BO09923.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:07 Download gff for BO09923.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11334-PB 1..909 17..925 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:58 Download gff for BO09923.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11334-PB 1..909 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:43:31 Download gff for BO09923.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11334-RA 229..1140 14..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:09 Download gff for BO09923.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11334-RA 229..1140 14..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:09 Download gff for BO09923.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31460921..31461156 149..384 100 <- Minus
3R 31461814..31461948 14..148 99   Minus
3R 31460198..31460341 782..925 99 <- Minus
3R 31460400..31460563 618..781 100 <- Minus
3R 31460630..31460862 385..617 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:43:31 Download gff for BO09923.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27287536..27287670 14..148 99   Minus
arm_3R 27285920..27286063 782..925 99 <- Minus
arm_3R 27286122..27286285 618..781 100 <- Minus
arm_3R 27286352..27286584 385..617 100 <- Minus
arm_3R 27286643..27286878 149..384 100 <- Minus

BO09923.complete Sequence

1126 bp (1126 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631615

> BO09923.complete
GAAGTTATCAGTCGACATGAGCCTGCAGTCGATCAAGTACTCGCGGGGCA
GCCTGGAGATCCTCGACCAGCTGCTCCTGCCCGGTCAGTCAAAGTACGTG
GTGGTGCGAGGAGTGGAGGATGGCTGGAAGGTCATCAACAAGATGCAGGT
GCGTGGTGCTCCGGCCATCGCTATCGTTGGCTGCCTCTCCCTGGCCGTGG
AAATCAACCCGGAGGATTTTGAGAACAAGAAATCACTGCGGCAGGAGATT
GAGGGAAAGTTGAACTATTTGGTTTCCGCCAGGCCTACGGCGGTCAACAT
GAAGATCGCAGCCGACGAGCTCATCACCCTGGCCAACGAACTTTACAAGG
ACGAGGCAATCGACGTGACCCAAATGAAGCATAGATTTCTGGACGCGACC
GAAGCTATGCTAAAAAAAGACATTGCCGATAACCGTGCCATTGGAGCGAA
TGGAGCCCAGGCGATCCTACAGGGCGTGGCGAAGGCAGGTAAAGCGCCCG
CTGGATCGACGGGATCCGTCCGGGTGCTTACCCACTGCAACACGGGTTCC
CTGGCCACCGCCGGGTACGGTACAGCTCTGGGAGTGGTCCGCCAACTGGC
CGAGCTGGGAAAACTGGAGCACGTTTATTGCACAGAGACTCGTCCTTACA
ATCAGGGAGCCCGCCTCACAGCCTACGAACTGGTCCACGAGAAATTCCCC
GCCACTCTGGTTCTGGATAGCATGGTGGCGGCTCTGCTGCGGGCCAAAAA
TGTGGCTGCTGTGGTTGTAGGAGCAGATCGTGTGGCCTCCAATGGCGACA
CGGCCAACAAGATTGGTACCTACCAGATTGCCGTGGTTGCCAAGCACCAC
GACGTGCCATTTTACGTAGCCGCCCCTCTGACTTCCATCGATCTAGCGAT
TCCCGGAGGCGATCACATCATCATTGAGGAGCGTCCCGACCGGGAAATGA
CGCACGTGGGAGAGCACCGCATCGCTGCCCCGGGCATTAACTGCTGGAAC
CCCGCCTTCGATGTGACCCCTGCCTCTCTGATCACAGGCATCATCACGGA
ACGCGGTGTCTTCAAGCCGGCGGAACTGAAAGAGGCCATCACTAAGTTGC
TAGAGTCCGCAAGCTTTCTAGACCAT

BO09923.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11334-RC 1095 CG11334-PC 1..1092 17..1108 5460 100 Plus
CG11334-RB 1095 CG11334-PB 1..1092 17..1108 5460 100 Plus
CG11334-RA 1095 CG11334-PA 1..1092 17..1108 5460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11334-RC 1380 CG11334-RC 96..1187 17..1108 5460 100 Plus
CG11334-RB 1452 CG11334-RB 168..1259 17..1108 5460 100 Plus
CG11334-RA 1516 CG11334-RA 232..1323 17..1108 5460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31460015..31460341 1108..782 1635 100 Minus
3R 32079331 3R 31460921..31461158 384..147 1190 100 Minus
3R 32079331 3R 31460630..31460864 617..383 1175 100 Minus
3R 32079331 3R 31460398..31460564 783..617 835 100 Minus
3R 32079331 3R 31461811..31461945 151..17 675 100 Minus
Blast to na_te.dros performed 2014-11-27 13:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 3833..3877 332..288 117 73.3 Minus

BO09923.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:10 Download gff for BO09923.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RB 1..1095 17..1112 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:59 Download gff for BO09923.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RB 143..1240 14..1112 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:36 Download gff for BO09923.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RA 232..1323 17..1110 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:10 Download gff for BO09923.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RB 143..1240 14..1112 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:59 Download gff for BO09923.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RA 232..1323 17..1110 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:59 Download gff for BO09923.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31460921..31461156 149..384 100 <- Minus
3R 31461814..31461945 17..148 100   Minus
3R 31460013..31460341 782..1110 99 <- Minus
3R 31460400..31460563 618..781 100 <- Minus
3R 31460630..31460862 385..617 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:36 Download gff for BO09923.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27287536..27287667 17..148 100   Minus
arm_3R 27286122..27286285 618..781 100 <- Minus
arm_3R 27285735..27286063 782..1110 99 <- Minus
arm_3R 27286352..27286584 385..617 100 <- Minus
arm_3R 27286643..27286878 149..384 100 <- Minus

BO09923.pep Sequence

Translation from 16 to 1126

> BO09923.pep
MSLQSIKYSRGSLEILDQLLLPGQSKYVVVRGVEDGWKVINKMQVRGAPA
IAIVGCLSLAVEINPEDFENKKSLRQEIEGKLNYLVSARPTAVNMKIAAD
ELITLANELYKDEAIDVTQMKHRFLDATEAMLKKDIADNRAIGANGAQAI
LQGVAKAGKAPAGSTGSVRVLTHCNTGSLATAGYGTALGVVRQLAELGKL
EHVYCTETRPYNQGARLTAYELVHEKFPATLVLDSMVAALLRAKNVAAVV
VGADRVASNGDTANKIGTYQIAVVAKHHDVPFYVAAPLTSIDLAIPGGDH
IIIEERPDREMTHVGEHRIAAPGINCWNPAFDVTPASLITGIITERGVFK
PAELKEAITKLLESASFLDH

BO09923.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11334-PC 364 CG11334-PC 1..364 1..364 1835 100 Plus
CG11334-PB 364 CG11334-PB 1..364 1..364 1835 100 Plus
CG11334-PA 364 CG11334-PA 1..364 1..364 1835 100 Plus