Clone Sequence Records
BO09923.3prime Sequence
892 bp (848 high quality bases) assembled on 2006-04-19
> BO09923.3prime
ATGGTCTAGAAAGCTTGCGGACTCTAGCAACTTAGTGATGGCCTCTTTCA
GTTCCGCCGGCTTGAAGACACCGCGTTCCGTGATGATGCCTGTGATCAGA
GAGGCAGGGGTCACATCGAAGGCGGGGTTCCAGCAGTTAATGCCCGGGGC
AGCGATGCGGTGCTCTCCCACGTGCGTCATTTCCCGGTCGGGACGCTCCT
CAATGATGATGTGATCGCCTCCGGGAATCGCTAGATCGATGGAAGTCAGA
GGGGCGGCTACGTAAAATGGCACGTCGTGGTGCTTGGCAACCACGGCAAT
CTGGTAGGTACCAATCTTGTTGGCCGTGTCGCCATTGGAGGCCACACGAT
CTGCTCCTACAACCACAGCAGCCACATTTTTGGCCCGCAGCAGAGCCGCC
ACCATGCTATCCAGAACCAGAGTGGCGGGGAATTTCTCGTGGACCAGTTC
GTAGGCTGTGAGGCGGGCTCCCTGATTGTAAGGACGAGTCTCTGTGCAAT
AAACGTGCTCCAGTTTTCCCAGCTCGGCCAGTTGGCGGACCACTCCCAGA
GCTGTACCGTACCCGGCGGTGGCCAGGGAACCCGTGTTGCAGTGGGTAAG
CACCCGGACGGATCCCGTCGATCCAGCGGGCGCTTTACCTGCCTTCGCCA
CGCCCTGTAGGATCGCCTGGGCTCCATTCGCTCCAATGGCACGGTTATCG
GCAATGTCTTTTTTTAGCATAGCTTCGGTCGCGTCCAGAAATCTATGCTT
CATTTGGGTCACGTCGATTGCCTCGTCCTTGTAAAGTTCGTTGGCCAGGG
TGATGAGCTCGTCGGCTGCGATCTTCATGTTGACCGCCGTANGCCTGGCG
GAAACCAAATAGTTCAACTTTCCCTCAATCTCCCTGCGCAGT
BO09923.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11334-PA | 1095 | CG11334-RA | 228..1092 | 883..19 | 4306 | 99.8 | Minus |
CG11334-PB | 1095 | CG11334-RB | 228..1092 | 883..19 | 4306 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11334-RC | 1380 | CG11334-RC | 323..1187 | 883..19 | 4314 | 99.9 | Minus |
CG11334-RB | 1452 | CG11334-RB | 395..1259 | 883..19 | 4314 | 99.9 | Minus |
CG11334-RA | 1516 | CG11334-RA | 459..1323 | 883..19 | 4314 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31460015..31460341 | 19..345 | 1635 | 100 | Plus |
3R | 32079331 | 3R | 31460630..31460864 | 510..744 | 1175 | 100 | Plus |
3R | 32079331 | 3R | 31460398..31460564 | 344..510 | 835 | 100 | Plus |
3R | 32079331 | 3R | 31460921..31461061 | 743..883 | 694 | 99.3 | Plus |
Blast to na_te.dros performed 2015-02-12 03:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3833..3877 | 795..839 | 117 | 73.3 | Plus |
BO09923.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:06 Download gff for
BO09923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-PB | 219..1095 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:56 Download gff for
BO09923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-PB | 219..1095 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:13:55 Download gff for
BO09923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-RA | 450..1326 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:44 Download gff for
BO09923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-RA | 450..1326 | 15..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:44 Download gff for
BO09923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31460012..31460341 | 15..345 | 99 | <- | Plus |
3R | 31460400..31460563 | 346..509 | 100 | <- | Plus |
3R | 31460630..31460862 | 510..742 | 100 | <- | Plus |
3R | 31460921..31461070 | 743..892 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:13:55 Download gff for
BO09923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27286122..27286285 | 346..509 | 100 | <- | Plus |
arm_3R | 27286352..27286584 | 510..742 | 100 | <- | Plus |
arm_3R | 27286643..27286792 | 743..892 | 98 | | Plus |
arm_3R | 27285734..27286063 | 15..345 | 99 | <- | Plus |
BO09923.5prime Sequence
925 bp (867 high quality bases) assembled on 2006-04-19
> BO09923.5prime
GAAGTTATCAGTCGACATGAGCCTGCAGTCGATCAAGTACTCGCGGGGCA
GCCTGGAGATCCTCGACCAGCTGCTCCTGCCCGGTCAGTCAAAGTACGTG
GTGGTGCGAGGAGTGGAGGATGGCTGGAAGGTCATCAACAAGATGCAGGT
GCGTGGTGCTCCGGCCATCGCTATCGTTGGCTGCCTCTCCCTGGCCGTGG
AAATCAACCCGGAGGATTTTGAGAACAAGAAATCACTGCGGCAGGAGATT
GAGGGAAAGTTGAACTATTTGGTTTCCGCCAGGCCTACGGCGGTCAACAT
GAAGATCGCAGCCGACGAGCTCATCACCCTGGCCAACGAACTTTACAAGG
ACGAGGCAATCGACGTGACCCAAATGAAGCATAGATTTCTGGACGCGACC
GAAGCTATGCTAAAAAAAGACATTGCCGATAACCGTGCCATTGGAGCGAA
TGGAGCCCAGGCGATCCTACAGGGCGTGGCGAAGGCAGGTAAAGCGCCCG
CTGGATCGACGGGATCCGTCCGGGTGCTTACCCACTGCAACACGGGTTCC
CTGGCCACCGCCGGGTACGGTACAGCTCTGGGAGTGGTCCGCCAACTGGC
CGAGCTGGGAAAACTGGAGCACGTTTATTGCACAGAGACTCGTCCTTACA
ATCAGGGAGCCCGCCTCACAGCCTACGAACTGGTCCACGAGAAATTCCCC
GCCACTCTGGTTCTGGATAGCATGGTGGCGGCTCTGCTGCGGGCCAAAAA
TGTGGCTGCTGTGGTTGTAGGAGCAGATCGTGTGGCCTCCAATGGCGACA
CGGCCAACAAGATTGGTACCTACCAGATTGCCGTGGTTGCCAAGCACCAC
GACGTGCCATTTTACGTAGCCGCCCCTCTGACTTCCATCGATCTAGCGAT
TCCGGGAGGCGATCACATCATCATT
BO09923.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11334-PA | 1095 | CG11334-RA | 1..909 | 17..925 | 4520 | 99.8 | Plus |
CG11334-PB | 1095 | CG11334-RB | 1..909 | 17..925 | 4520 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11334-RC | 1380 | CG11334-RC | 96..1004 | 17..925 | 4530 | 99.9 | Plus |
CG11334-RB | 1452 | CG11334-RB | 168..1076 | 17..925 | 4530 | 99.9 | Plus |
CG11334-RA | 1516 | CG11334-RA | 232..1140 | 17..925 | 4530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31460921..31461158 | 384..147 | 1190 | 100 | Minus |
3R | 32079331 | 3R | 31460630..31460864 | 617..383 | 1175 | 100 | Minus |
3R | 32079331 | 3R | 31460398..31460564 | 783..617 | 835 | 100 | Minus |
3R | 32079331 | 3R | 31460198..31460341 | 925..782 | 705 | 99.3 | Minus |
3R | 32079331 | 3R | 31461811..31461945 | 151..17 | 675 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 20:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3833..3877 | 332..288 | 117 | 73.3 | Minus |
BO09923.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:07 Download gff for
BO09923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-PB | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:58 Download gff for
BO09923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-PB | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:43:31 Download gff for
BO09923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-RA | 229..1140 | 14..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:09 Download gff for
BO09923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-RA | 229..1140 | 14..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:09 Download gff for
BO09923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31460921..31461156 | 149..384 | 100 | <- | Minus |
3R | 31461814..31461948 | 14..148 | 99 | | Minus |
3R | 31460198..31460341 | 782..925 | 99 | <- | Minus |
3R | 31460400..31460563 | 618..781 | 100 | <- | Minus |
3R | 31460630..31460862 | 385..617 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:43:31 Download gff for
BO09923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27287536..27287670 | 14..148 | 99 | | Minus |
arm_3R | 27285920..27286063 | 782..925 | 99 | <- | Minus |
arm_3R | 27286122..27286285 | 618..781 | 100 | <- | Minus |
arm_3R | 27286352..27286584 | 385..617 | 100 | <- | Minus |
arm_3R | 27286643..27286878 | 149..384 | 100 | <- | Minus |
BO09923.complete Sequence
1126 bp (1126 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631615
> BO09923.complete
GAAGTTATCAGTCGACATGAGCCTGCAGTCGATCAAGTACTCGCGGGGCA
GCCTGGAGATCCTCGACCAGCTGCTCCTGCCCGGTCAGTCAAAGTACGTG
GTGGTGCGAGGAGTGGAGGATGGCTGGAAGGTCATCAACAAGATGCAGGT
GCGTGGTGCTCCGGCCATCGCTATCGTTGGCTGCCTCTCCCTGGCCGTGG
AAATCAACCCGGAGGATTTTGAGAACAAGAAATCACTGCGGCAGGAGATT
GAGGGAAAGTTGAACTATTTGGTTTCCGCCAGGCCTACGGCGGTCAACAT
GAAGATCGCAGCCGACGAGCTCATCACCCTGGCCAACGAACTTTACAAGG
ACGAGGCAATCGACGTGACCCAAATGAAGCATAGATTTCTGGACGCGACC
GAAGCTATGCTAAAAAAAGACATTGCCGATAACCGTGCCATTGGAGCGAA
TGGAGCCCAGGCGATCCTACAGGGCGTGGCGAAGGCAGGTAAAGCGCCCG
CTGGATCGACGGGATCCGTCCGGGTGCTTACCCACTGCAACACGGGTTCC
CTGGCCACCGCCGGGTACGGTACAGCTCTGGGAGTGGTCCGCCAACTGGC
CGAGCTGGGAAAACTGGAGCACGTTTATTGCACAGAGACTCGTCCTTACA
ATCAGGGAGCCCGCCTCACAGCCTACGAACTGGTCCACGAGAAATTCCCC
GCCACTCTGGTTCTGGATAGCATGGTGGCGGCTCTGCTGCGGGCCAAAAA
TGTGGCTGCTGTGGTTGTAGGAGCAGATCGTGTGGCCTCCAATGGCGACA
CGGCCAACAAGATTGGTACCTACCAGATTGCCGTGGTTGCCAAGCACCAC
GACGTGCCATTTTACGTAGCCGCCCCTCTGACTTCCATCGATCTAGCGAT
TCCCGGAGGCGATCACATCATCATTGAGGAGCGTCCCGACCGGGAAATGA
CGCACGTGGGAGAGCACCGCATCGCTGCCCCGGGCATTAACTGCTGGAAC
CCCGCCTTCGATGTGACCCCTGCCTCTCTGATCACAGGCATCATCACGGA
ACGCGGTGTCTTCAAGCCGGCGGAACTGAAAGAGGCCATCACTAAGTTGC
TAGAGTCCGCAAGCTTTCTAGACCAT
BO09923.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11334-RC | 1095 | CG11334-PC | 1..1092 | 17..1108 | 5460 | 100 | Plus |
CG11334-RB | 1095 | CG11334-PB | 1..1092 | 17..1108 | 5460 | 100 | Plus |
CG11334-RA | 1095 | CG11334-PA | 1..1092 | 17..1108 | 5460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11334-RC | 1380 | CG11334-RC | 96..1187 | 17..1108 | 5460 | 100 | Plus |
CG11334-RB | 1452 | CG11334-RB | 168..1259 | 17..1108 | 5460 | 100 | Plus |
CG11334-RA | 1516 | CG11334-RA | 232..1323 | 17..1108 | 5460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31460015..31460341 | 1108..782 | 1635 | 100 | Minus |
3R | 32079331 | 3R | 31460921..31461158 | 384..147 | 1190 | 100 | Minus |
3R | 32079331 | 3R | 31460630..31460864 | 617..383 | 1175 | 100 | Minus |
3R | 32079331 | 3R | 31460398..31460564 | 783..617 | 835 | 100 | Minus |
3R | 32079331 | 3R | 31461811..31461945 | 151..17 | 675 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3833..3877 | 332..288 | 117 | 73.3 | Minus |
BO09923.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:10 Download gff for
BO09923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-RB | 1..1095 | 17..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:59 Download gff for
BO09923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-RB | 143..1240 | 14..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:36 Download gff for
BO09923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-RA | 232..1323 | 17..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:10 Download gff for
BO09923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-RB | 143..1240 | 14..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:59 Download gff for
BO09923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-RA | 232..1323 | 17..1110 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:59 Download gff for
BO09923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31460921..31461156 | 149..384 | 100 | <- | Minus |
3R | 31461814..31461945 | 17..148 | 100 | | Minus |
3R | 31460013..31460341 | 782..1110 | 99 | <- | Minus |
3R | 31460400..31460563 | 618..781 | 100 | <- | Minus |
3R | 31460630..31460862 | 385..617 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:36 Download gff for
BO09923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27287536..27287667 | 17..148 | 100 | | Minus |
arm_3R | 27286122..27286285 | 618..781 | 100 | <- | Minus |
arm_3R | 27285735..27286063 | 782..1110 | 99 | <- | Minus |
arm_3R | 27286352..27286584 | 385..617 | 100 | <- | Minus |
arm_3R | 27286643..27286878 | 149..384 | 100 | <- | Minus |
BO09923.pep Sequence
Translation from 16 to 1126
> BO09923.pep
MSLQSIKYSRGSLEILDQLLLPGQSKYVVVRGVEDGWKVINKMQVRGAPA
IAIVGCLSLAVEINPEDFENKKSLRQEIEGKLNYLVSARPTAVNMKIAAD
ELITLANELYKDEAIDVTQMKHRFLDATEAMLKKDIADNRAIGANGAQAI
LQGVAKAGKAPAGSTGSVRVLTHCNTGSLATAGYGTALGVVRQLAELGKL
EHVYCTETRPYNQGARLTAYELVHEKFPATLVLDSMVAALLRAKNVAAVV
VGADRVASNGDTANKIGTYQIAVVAKHHDVPFYVAAPLTSIDLAIPGGDH
IIIEERPDREMTHVGEHRIAAPGINCWNPAFDVTPASLITGIITERGVFK
PAELKEAITKLLESASFLDH
BO09923.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11334-PC | 364 | CG11334-PC | 1..364 | 1..364 | 1835 | 100 | Plus |
CG11334-PB | 364 | CG11334-PB | 1..364 | 1..364 | 1835 | 100 | Plus |
CG11334-PA | 364 | CG11334-PA | 1..364 | 1..364 | 1835 | 100 | Plus |