Clone Sequence Records
BO09924.3prime Sequence
916 bp (840 high quality bases) assembled on 2006-04-19
> BO09924.3prime
ATGGTCTAGAAAGCTTGCTGCGGCCAACAAACGCTGTATATTCTTCGGCG
TGTTCTCCCCATTCAAATGCTTCGTCGTGTATCGCAGGGCATTCAGCAGC
GGCTCCGCCTTGATGGCCGGTTGCGCCTGCAGCAGTCGGACGCACCCCTT
CACATCCACATGGGCGCCACGCACGAAGGCTCCCTCCGGATGCACATGGT
CGTAGAGGATCACCAGGCCGACCATTACGCGCAGCACCAGCATTTTCGTG
TCCTCACGCTCGATCTGTTGCAGGAGTTTTGGATTTTCCAGCATCCTCAG
GCACACCTTGGCCATGGTGCCCAGCGTTTCCGTCGTGTTCTGGACATCAT
CGGCATTGTCATTGACAAACTTTGAGGTCGCCTCGCTCAGCACCTTGAGC
ATGGGCGTGGCGTGGGCGTAGAACAGGGACATCCGGTTGGCCAGTTCCGT
GCTGACCAGCATATTCTCCGTGGAATCCACACGCTGTCGGCTGACGATGC
GTCTGTAGTAGCTAAAATCATTCTGTATGGCGGGGGTTTTCATCTTGTAC
TCATCGAACTTCAGCACGAACTCCAAGATCTCGGCCAGCTGCTTGACCAG
CGCCTGCTGCGTCTCCAGATGCTGTGTCGGATTCAGTTTTCCGCCCACCA
GCTGGCCCAGCAGCTTGGGCACAATCTTGTCCAGCTCCATGGAATGCTCG
TAGCAGCGCTTCAGCTTGTTCACCAACGGCAGCACCGCCGCCCAGGCTTT
GGCGGTCACCTCCGGCGATGGATCGGCGATGGCTTCTCGGATTTCCTTGC
CGGCACCCCGATAGATCTGTATCTCGTCGAGCACCACCTCCGATTCCCGG
AGTACCCGCTCCACCTCGTCGTAGACGGCACGCTCCGTTTCCGTGGGCGC
GGCGTTCTCGAAATCC
BO09924.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32066-PC | 975 | CG32066-RC | 75..972 | 916..19 | 4490 | 100 | Minus |
CG32066-PB | 975 | CG32066-RB | 75..972 | 916..19 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32066-RB | 2324 | CG32066-RB | 509..1406 | 916..19 | 4490 | 100 | Minus |
CG32066-RC | 2112 | CG32066-RC | 427..1324 | 916..19 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10646859..10647127 | 540..808 | 1330 | 99.6 | Plus |
3L | 28110227 | 3L | 10641532..10641796 | 281..545 | 1325 | 100 | Plus |
3L | 28110227 | 3L | 10641204..10641465 | 19..280 | 1310 | 100 | Plus |
3L | 28110227 | 3L | 10659364..10659473 | 807..916 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:08:09 has no hits.
BO09924.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:08 Download gff for
BO09924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32066-PB | 75..975 | 15..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:59 Download gff for
BO09924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32066-PB | 75..975 | 15..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:56 Download gff for
BO09924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32066-RC | 427..1331 | 11..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:21:15 Download gff for
BO09924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32066-RC | 427..1331 | 11..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:21:15 Download gff for
BO09924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10641197..10641465 | 11..280 | 98 | <- | Plus |
3L | 10641532..10641794 | 281..543 | 100 | <- | Plus |
3L | 10646863..10647126 | 544..807 | 100 | <- | Plus |
3L | 10659365..10659473 | 808..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:56 Download gff for
BO09924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10634297..10634565 | 11..280 | 98 | <- | Plus |
arm_3L | 10634632..10634894 | 281..543 | 100 | <- | Plus |
arm_3L | 10639963..10640226 | 544..807 | 100 | <- | Plus |
arm_3L | 10652465..10652573 | 808..916 | 100 | | Plus |
BO09924.5prime Sequence
887 bp (717 high quality bases) assembled on 2006-04-19
> BO09924.5prime
GAAGTTATCAGTCGACATGGGAAAGCTGCTGAGCCTGCTGTCACGCGACG
ACTCCAATTGTTGCGCCGCCAAATCCTACGATGTCTTCCTGGATTTCGAG
AACGCCGCGCCCACGGAAACGGAGCGTGCCGTCTACGACGAGGTGGAGCG
GGTACTCCGGGAATCGGAGGTGGTGCTCGACGAGATACAGATCTATCGGG
GTGCCGGCAAGGAAATCCGAGAAGCCATCGCCGATCCATCGCCGGAGGTG
ACCGCCAAAGCCTGGGCGGCGGTGCTGCCGTTGGTGAACAAGCTGAAGCG
CTGCTACGAGCATTCCATGGAGCTGGACAAGATTGTGCCCAAGCTGCTGG
GCCAGCTGGTGGGCGGAAAACTGAATCCGACACAGCATCTGGAGACGCAG
CAGGCGCTGGTCAAGCAGCTGGCCGAGATCTTGGAGTTCGTGCTGAAGTT
CGATGAGTACAAGATGAAAACCCCCGCCATACAGAATGATTTTAGCTACT
ACAGACGCATCGTCAGCCGACAGCGTGTGGATTCCACGGAGAATATGCTG
GTCAGCACGGAACTGGCCAACCGGATGTCCCTGTTCTACGCCCACGCCAC
GCCCATGCTCAAGGTGCTGAGCGAGGCGACCTCAAAGTTTGTCAATGACA
ATGCCGATGATGTCCAGAACACGACGGAAACGCTGGGCACCATGGCCAAG
GTGTGCCTGAGGATGCTGGAAAATCCAAAACTCCTGCAACAGATCGAGCG
TGAGGACACGAAAATGCTGGTGCTGCGCGTAATGGTCGGCCTGGTGATCC
TCTACGACCATGTGCATCCGGAGGGAGCCTTCGTGCGTGGCGCCCATGTG
GATGTGAAGGGGTGCGTCCGACTGCTGCAGGCGCAAC
BO09924.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32066-PC | 975 | CG32066-RC | 1..871 | 17..887 | 4355 | 100 | Plus |
CG32066-PB | 975 | CG32066-RB | 1..871 | 17..887 | 4355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32066-RB | 2324 | CG32066-RB | 435..1305 | 17..887 | 4355 | 100 | Plus |
CG32066-RC | 2112 | CG32066-RC | 353..1223 | 17..887 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10646859..10647127 | 467..199 | 1330 | 99.6 | Minus |
3L | 28110227 | 3L | 10641532..10641796 | 726..462 | 1325 | 100 | Minus |
3L | 28110227 | 3L | 10659364..10659547 | 200..17 | 920 | 100 | Minus |
3L | 28110227 | 3L | 10641305..10641465 | 887..727 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:38:46 has no hits.
BO09924.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:09 Download gff for
BO09924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32066-PB | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:01 Download gff for
BO09924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32066-PB | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:38:41 Download gff for
BO09924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32066-RC | 348..1223 | 10..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:19:21 Download gff for
BO09924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32066-RC | 348..1223 | 10..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:19:21 Download gff for
BO09924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10646863..10647126 | 200..463 | 100 | <- | Minus |
3L | 10659365..10659552 | 10..199 | 97 | | Minus |
3L | 10641532..10641794 | 464..726 | 100 | <- | Minus |
3L | 10641305..10641465 | 727..887 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:38:41 Download gff for
BO09924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10634405..10634565 | 727..887 | 100 | <- | Minus |
arm_3L | 10634632..10634894 | 464..726 | 100 | <- | Minus |
arm_3L | 10639963..10640226 | 200..463 | 100 | <- | Minus |
arm_3L | 10652465..10652652 | 10..199 | 97 | | Minus |
BO09924.complete Sequence
1006 bp (1006 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631616
> BO09924.complete
GAAGTTATCAGTCGACATGGGAAAGCTGCTGAGCCTGCTGTCACGCGACG
ACTCCAATTGTTGCGCCGCCAAATCCTACGATGTCTTCCTGGATTTCGAG
AACGCCGCGCCCACGGAAACGGAGCGTGCCGTCTACGACGAGGTGGAGCG
GGTACTCCGGGAATCGGAGGTGGTGCTCGACGAGATACAGATCTATCGGG
GTGCCGGCAAGGAAATCCGAGAAGCCATCGCCGATCCATCGCCGGAGGTG
ACCGCCAAAGCCTGGGCGGCGGTGCTGCCGTTGGTGAACAAGCTGAAGCG
CTGCTACGAGCATTCCATGGAGCTGGACAAGATTGTGCCCAAGCTGCTGG
GCCAGCTGGTGGGCGGAAAACTGAATCCGACACAGCATCTGGAGACGCAG
CAGGCGCTGGTCAAGCAGCTGGCCGAGATCTTGGAGTTCGTGCTGAAGTT
CGATGAGTACAAGATGAAAACCCCCGCCATACAGAATGATTTTAGCTACT
ACAGACGCATCGTCAGCCGACAGCGTGTGGATTCCACGGAGAATATGCTG
GTCAGCACGGAACTGGCCAACCGGATGTCCCTGTTCTACGCCCACGCCAC
GCCCATGCTCAAGGTGCTGAGCGAGGCGACCTCAAAGTTTGTCAATGACA
ATGCCGATGATGTCCAGAACACGACGGAAACGCTGGGCACCATGGCCAAG
GTGTGCCTGAGGATGCTGGAAAATCCAAAACTCCTGCAACAGATCGAGCG
TGAGGACACGAAAATGCTGGTGCTGCGCGTAATGGTCGGCCTGGTGATCC
TCTACGACCATGTGCATCCGGAGGGAGCCTTCGTGCGTGGCGCCCATGTG
GATGTGAAGGGGTGCGTCCGACTGCTGCAGGCGCAACCGGCCATCAAGGC
GGAGCCGCTGCTGAATGCCCTGCGATACACGACGAAGCATTTGAATGGGG
AGAACACGCCGAAGAATATACAGCGTTTGTTGGCCGCAGCAAGCTTTCTA
GACCAT
BO09924.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32066-RB | 975 | CG32066-PB | 1..972 | 17..988 | 4860 | 100 | Plus |
CG32066-RC | 975 | CG32066-PC | 1..972 | 17..988 | 4860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32066-RB | 2324 | CG32066-RB | 435..1406 | 17..988 | 4860 | 100 | Plus |
CG32066-RC | 2112 | CG32066-RC | 353..1324 | 17..988 | 4860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10646859..10647127 | 467..199 | 1330 | 99.6 | Minus |
3L | 28110227 | 3L | 10641532..10641796 | 726..462 | 1325 | 100 | Minus |
3L | 28110227 | 3L | 10641204..10641465 | 988..727 | 1310 | 100 | Minus |
3L | 28110227 | 3L | 10659364..10659547 | 200..17 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:01:17 has no hits.
BO09924.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:42 Download gff for
BO09924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32066-RB | 1..975 | 17..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:25 Download gff for
BO09924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32066-RB | 435..1406 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:41 Download gff for
BO09924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32066-RC | 353..1324 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:43 Download gff for
BO09924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32066-RB | 430..1413 | 10..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:12 Download gff for
BO09924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32066-RC | 353..1324 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:12 Download gff for
BO09924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10641202..10641465 | 727..990 | 99 | <- | Minus |
3L | 10641532..10641794 | 464..726 | 100 | <- | Minus |
3L | 10646863..10647126 | 200..463 | 100 | <- | Minus |
3L | 10659365..10659547 | 17..199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:41 Download gff for
BO09924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10652465..10652647 | 17..199 | 100 | | Minus |
arm_3L | 10634302..10634565 | 727..990 | 99 | <- | Minus |
arm_3L | 10634632..10634894 | 464..726 | 100 | <- | Minus |
arm_3L | 10639963..10640226 | 200..463 | 100 | <- | Minus |
BO09924.pep Sequence
Translation from 16 to 1006
> BO09924.pep
MGKLLSLLSRDDSNCCAAKSYDVFLDFENAAPTETERAVYDEVERVLRES
EVVLDEIQIYRGAGKEIREAIADPSPEVTAKAWAAVLPLVNKLKRCYEHS
MELDKIVPKLLGQLVGGKLNPTQHLETQQALVKQLAEILEFVLKFDEYKM
KTPAIQNDFSYYRRIVSRQRVDSTENMLVSTELANRMSLFYAHATPMLKV
LSEATSKFVNDNADDVQNTTETLGTMAKVCLRMLENPKLLQQIEREDTKM
LVLRVMVGLVILYDHVHPEGAFVRGAHVDVKGCVRLLQAQPAIKAEPLLN
ALRYTTKHLNGENTPKNIQRLLAAASFLDH
BO09924.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32066-PB | 324 | CG32066-PB | 1..324 | 1..324 | 1639 | 100 | Plus |
CG32066-PC | 324 | CG32066-PC | 1..324 | 1..324 | 1639 | 100 | Plus |