Clone BO09924 Report

Search the DGRC for BO09924

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:99
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG32066-RB
Protein status:BO09924.pep: validated full length
Sequenced Size:1006

Clone Sequence Records

BO09924.3prime Sequence

916 bp (840 high quality bases) assembled on 2006-04-19

> BO09924.3prime
ATGGTCTAGAAAGCTTGCTGCGGCCAACAAACGCTGTATATTCTTCGGCG
TGTTCTCCCCATTCAAATGCTTCGTCGTGTATCGCAGGGCATTCAGCAGC
GGCTCCGCCTTGATGGCCGGTTGCGCCTGCAGCAGTCGGACGCACCCCTT
CACATCCACATGGGCGCCACGCACGAAGGCTCCCTCCGGATGCACATGGT
CGTAGAGGATCACCAGGCCGACCATTACGCGCAGCACCAGCATTTTCGTG
TCCTCACGCTCGATCTGTTGCAGGAGTTTTGGATTTTCCAGCATCCTCAG
GCACACCTTGGCCATGGTGCCCAGCGTTTCCGTCGTGTTCTGGACATCAT
CGGCATTGTCATTGACAAACTTTGAGGTCGCCTCGCTCAGCACCTTGAGC
ATGGGCGTGGCGTGGGCGTAGAACAGGGACATCCGGTTGGCCAGTTCCGT
GCTGACCAGCATATTCTCCGTGGAATCCACACGCTGTCGGCTGACGATGC
GTCTGTAGTAGCTAAAATCATTCTGTATGGCGGGGGTTTTCATCTTGTAC
TCATCGAACTTCAGCACGAACTCCAAGATCTCGGCCAGCTGCTTGACCAG
CGCCTGCTGCGTCTCCAGATGCTGTGTCGGATTCAGTTTTCCGCCCACCA
GCTGGCCCAGCAGCTTGGGCACAATCTTGTCCAGCTCCATGGAATGCTCG
TAGCAGCGCTTCAGCTTGTTCACCAACGGCAGCACCGCCGCCCAGGCTTT
GGCGGTCACCTCCGGCGATGGATCGGCGATGGCTTCTCGGATTTCCTTGC
CGGCACCCCGATAGATCTGTATCTCGTCGAGCACCACCTCCGATTCCCGG
AGTACCCGCTCCACCTCGTCGTAGACGGCACGCTCCGTTTCCGTGGGCGC
GGCGTTCTCGAAATCC

BO09924.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32066-PC 975 CG32066-RC 75..972 916..19 4490 100 Minus
CG32066-PB 975 CG32066-RB 75..972 916..19 4490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32066-RB 2324 CG32066-RB 509..1406 916..19 4490 100 Minus
CG32066-RC 2112 CG32066-RC 427..1324 916..19 4490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10646859..10647127 540..808 1330 99.6 Plus
3L 28110227 3L 10641532..10641796 281..545 1325 100 Plus
3L 28110227 3L 10641204..10641465 19..280 1310 100 Plus
3L 28110227 3L 10659364..10659473 807..916 550 100 Plus
Blast to na_te.dros performed on 2015-02-09 03:08:09 has no hits.

BO09924.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:08 Download gff for BO09924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32066-PB 75..975 15..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:33:59 Download gff for BO09924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32066-PB 75..975 15..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:56 Download gff for BO09924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32066-RC 427..1331 11..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:21:15 Download gff for BO09924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32066-RC 427..1331 11..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:21:15 Download gff for BO09924.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10641197..10641465 11..280 98 <- Plus
3L 10641532..10641794 281..543 100 <- Plus
3L 10646863..10647126 544..807 100 <- Plus
3L 10659365..10659473 808..916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:56 Download gff for BO09924.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10634297..10634565 11..280 98 <- Plus
arm_3L 10634632..10634894 281..543 100 <- Plus
arm_3L 10639963..10640226 544..807 100 <- Plus
arm_3L 10652465..10652573 808..916 100   Plus

BO09924.5prime Sequence

887 bp (717 high quality bases) assembled on 2006-04-19

> BO09924.5prime
GAAGTTATCAGTCGACATGGGAAAGCTGCTGAGCCTGCTGTCACGCGACG
ACTCCAATTGTTGCGCCGCCAAATCCTACGATGTCTTCCTGGATTTCGAG
AACGCCGCGCCCACGGAAACGGAGCGTGCCGTCTACGACGAGGTGGAGCG
GGTACTCCGGGAATCGGAGGTGGTGCTCGACGAGATACAGATCTATCGGG
GTGCCGGCAAGGAAATCCGAGAAGCCATCGCCGATCCATCGCCGGAGGTG
ACCGCCAAAGCCTGGGCGGCGGTGCTGCCGTTGGTGAACAAGCTGAAGCG
CTGCTACGAGCATTCCATGGAGCTGGACAAGATTGTGCCCAAGCTGCTGG
GCCAGCTGGTGGGCGGAAAACTGAATCCGACACAGCATCTGGAGACGCAG
CAGGCGCTGGTCAAGCAGCTGGCCGAGATCTTGGAGTTCGTGCTGAAGTT
CGATGAGTACAAGATGAAAACCCCCGCCATACAGAATGATTTTAGCTACT
ACAGACGCATCGTCAGCCGACAGCGTGTGGATTCCACGGAGAATATGCTG
GTCAGCACGGAACTGGCCAACCGGATGTCCCTGTTCTACGCCCACGCCAC
GCCCATGCTCAAGGTGCTGAGCGAGGCGACCTCAAAGTTTGTCAATGACA
ATGCCGATGATGTCCAGAACACGACGGAAACGCTGGGCACCATGGCCAAG
GTGTGCCTGAGGATGCTGGAAAATCCAAAACTCCTGCAACAGATCGAGCG
TGAGGACACGAAAATGCTGGTGCTGCGCGTAATGGTCGGCCTGGTGATCC
TCTACGACCATGTGCATCCGGAGGGAGCCTTCGTGCGTGGCGCCCATGTG
GATGTGAAGGGGTGCGTCCGACTGCTGCAGGCGCAAC

BO09924.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32066-PC 975 CG32066-RC 1..871 17..887 4355 100 Plus
CG32066-PB 975 CG32066-RB 1..871 17..887 4355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32066-RB 2324 CG32066-RB 435..1305 17..887 4355 100 Plus
CG32066-RC 2112 CG32066-RC 353..1223 17..887 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10646859..10647127 467..199 1330 99.6 Minus
3L 28110227 3L 10641532..10641796 726..462 1325 100 Minus
3L 28110227 3L 10659364..10659547 200..17 920 100 Minus
3L 28110227 3L 10641305..10641465 887..727 805 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:38:46 has no hits.

BO09924.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:09 Download gff for BO09924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32066-PB 1..871 17..887 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:01 Download gff for BO09924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32066-PB 1..871 17..887 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:38:41 Download gff for BO09924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32066-RC 348..1223 10..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:19:21 Download gff for BO09924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32066-RC 348..1223 10..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:19:21 Download gff for BO09924.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10646863..10647126 200..463 100 <- Minus
3L 10659365..10659552 10..199 97   Minus
3L 10641532..10641794 464..726 100 <- Minus
3L 10641305..10641465 727..887 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:38:41 Download gff for BO09924.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10634405..10634565 727..887 100 <- Minus
arm_3L 10634632..10634894 464..726 100 <- Minus
arm_3L 10639963..10640226 200..463 100 <- Minus
arm_3L 10652465..10652652 10..199 97   Minus

BO09924.complete Sequence

1006 bp (1006 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631616

> BO09924.complete
GAAGTTATCAGTCGACATGGGAAAGCTGCTGAGCCTGCTGTCACGCGACG
ACTCCAATTGTTGCGCCGCCAAATCCTACGATGTCTTCCTGGATTTCGAG
AACGCCGCGCCCACGGAAACGGAGCGTGCCGTCTACGACGAGGTGGAGCG
GGTACTCCGGGAATCGGAGGTGGTGCTCGACGAGATACAGATCTATCGGG
GTGCCGGCAAGGAAATCCGAGAAGCCATCGCCGATCCATCGCCGGAGGTG
ACCGCCAAAGCCTGGGCGGCGGTGCTGCCGTTGGTGAACAAGCTGAAGCG
CTGCTACGAGCATTCCATGGAGCTGGACAAGATTGTGCCCAAGCTGCTGG
GCCAGCTGGTGGGCGGAAAACTGAATCCGACACAGCATCTGGAGACGCAG
CAGGCGCTGGTCAAGCAGCTGGCCGAGATCTTGGAGTTCGTGCTGAAGTT
CGATGAGTACAAGATGAAAACCCCCGCCATACAGAATGATTTTAGCTACT
ACAGACGCATCGTCAGCCGACAGCGTGTGGATTCCACGGAGAATATGCTG
GTCAGCACGGAACTGGCCAACCGGATGTCCCTGTTCTACGCCCACGCCAC
GCCCATGCTCAAGGTGCTGAGCGAGGCGACCTCAAAGTTTGTCAATGACA
ATGCCGATGATGTCCAGAACACGACGGAAACGCTGGGCACCATGGCCAAG
GTGTGCCTGAGGATGCTGGAAAATCCAAAACTCCTGCAACAGATCGAGCG
TGAGGACACGAAAATGCTGGTGCTGCGCGTAATGGTCGGCCTGGTGATCC
TCTACGACCATGTGCATCCGGAGGGAGCCTTCGTGCGTGGCGCCCATGTG
GATGTGAAGGGGTGCGTCCGACTGCTGCAGGCGCAACCGGCCATCAAGGC
GGAGCCGCTGCTGAATGCCCTGCGATACACGACGAAGCATTTGAATGGGG
AGAACACGCCGAAGAATATACAGCGTTTGTTGGCCGCAGCAAGCTTTCTA
GACCAT

BO09924.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG32066-RB 975 CG32066-PB 1..972 17..988 4860 100 Plus
CG32066-RC 975 CG32066-PC 1..972 17..988 4860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32066-RB 2324 CG32066-RB 435..1406 17..988 4860 100 Plus
CG32066-RC 2112 CG32066-RC 353..1324 17..988 4860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10646859..10647127 467..199 1330 99.6 Minus
3L 28110227 3L 10641532..10641796 726..462 1325 100 Minus
3L 28110227 3L 10641204..10641465 988..727 1310 100 Minus
3L 28110227 3L 10659364..10659547 200..17 920 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:01:17 has no hits.

BO09924.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:42 Download gff for BO09924.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RB 1..975 17..992 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:25 Download gff for BO09924.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RB 435..1406 17..990 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:41 Download gff for BO09924.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RC 353..1324 17..990 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:43 Download gff for BO09924.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RB 430..1413 10..996 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:12 Download gff for BO09924.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RC 353..1324 17..990 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:12 Download gff for BO09924.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10641202..10641465 727..990 99 <- Minus
3L 10641532..10641794 464..726 100 <- Minus
3L 10646863..10647126 200..463 100 <- Minus
3L 10659365..10659547 17..199 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:41 Download gff for BO09924.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10652465..10652647 17..199 100   Minus
arm_3L 10634302..10634565 727..990 99 <- Minus
arm_3L 10634632..10634894 464..726 100 <- Minus
arm_3L 10639963..10640226 200..463 100 <- Minus

BO09924.pep Sequence

Translation from 16 to 1006

> BO09924.pep
MGKLLSLLSRDDSNCCAAKSYDVFLDFENAAPTETERAVYDEVERVLRES
EVVLDEIQIYRGAGKEIREAIADPSPEVTAKAWAAVLPLVNKLKRCYEHS
MELDKIVPKLLGQLVGGKLNPTQHLETQQALVKQLAEILEFVLKFDEYKM
KTPAIQNDFSYYRRIVSRQRVDSTENMLVSTELANRMSLFYAHATPMLKV
LSEATSKFVNDNADDVQNTTETLGTMAKVCLRMLENPKLLQQIEREDTKM
LVLRVMVGLVILYDHVHPEGAFVRGAHVDVKGCVRLLQAQPAIKAEPLLN
ALRYTTKHLNGENTPKNIQRLLAAASFLDH

BO09924.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG32066-PB 324 CG32066-PB 1..324 1..324 1639 100 Plus
CG32066-PC 324 CG32066-PC 1..324 1..324 1639 100 Plus