Clone Sequence Records
BO09927.3prime Sequence
907 bp (905 high quality bases) assembled on 2006-04-19
> BO09927.3prime
ATGGTCTAGAAAGCTTGCAAGAAAGTTTGACTTCTCCGCGGCGTTTTGAG
ATCCGCTGCTCTGGTTCGACCAACCGGTGTTCCCATTCTGTGGCTCCGAG
TTGTCGGTCTTTATTCCGTTGGCGGCCGGATTGTTGTTCGGGTTATTCGG
CCCCTTCCGTCCACCAAAGTTGTTGGCATTGTTGTGGCCCCCGTTCTGAG
CCATCCAAGATAGAAAATTGCCGCCCTGTTGGTCCTGGTTTTGGTTCTGC
AGCTGGTTGCCGACCAGGCTCCACTGGTTCAAGGCGGCAGCGACCAGTGC
GGGATTGATGGGCAATGAGTTGAGATTGAGCATTGACTGGTTGCTCATGT
TTTGGCCCTGGTTGGAGGAGCTCGATCCCTGCGAGTTGATGCCCAGGGCC
TGCAGGTTGGGCATGTCCAGGTGGCCACGGTTCATCCAGCCGTTGCTGCC
GCCCACGTTGCCGTTATGCGGCTGGTTCATTCCGTGAAAATTCGACTGGC
GACTGTTGTACTGGCTGCCGCCGTCCTGGCGGTTCGTGTTCCCGCCACTG
GAGTGATTGCCGCCATTGTTGTGGTAGCCCCCGCCCGAGTTGCCGCCGTA
ATTGTTGCCACCCATGCCGTAGCCGGCGGTGCCAATGTTGTGATTATTGG
GCACAATTGCGTTCTCACCGCCGTGAGCATTGTGTTGGTTATTACCTCGG
TGGTGTCCGTTGCGGCCCGGATTCATGTGGTTACCCTGTGGGTGGTATGA
GTGCATGCCCAAGCTGTTGGCAGAGTTGTAGTTGTAGCTCTGGACCTGTT
GGTTTCTGTTCTGCTCGGCCTTTGGAGCAGCATTCGACACATGGACCGAA
ACGCCCTTGATAATGTGATCCTCTCCGCACAGGGACTGTGCCACGTCGGG
GATCAGG
BO09927.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10327-PB | 1596 | TBPH-RB | 712..1593 | 900..19 | 4385 | 99.8 | Minus |
| CG10327-PC | 1596 | TBPH-RC | 712..1593 | 900..19 | 4385 | 99.8 | Minus |
| CG10327-PD | 1596 | TBPH-RD | 712..1593 | 900..19 | 4385 | 99.8 | Minus |
| CG10327-PA | 999 | TBPH-RA | 712..917 | 900..695 | 1005 | 99.5 | Minus |
| CG10327-PA | 999 | TBPH-RA | 915..999 | 227..143 | 425 | 100 | Minus |
| CG7804-PA | 957 | CG7804-RA | 731..784 | 881..828 | 145 | 90.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TBPH-RF | 1930 | CG10327-RF | 830..1711 | 900..19 | 4395 | 99.9 | Minus |
| TBPH-RE | 2159 | CG10327-RE | 1059..1940 | 900..19 | 4395 | 99.9 | Minus |
| TBPH-RD | 2156 | CG10327-RD | 1056..1937 | 900..19 | 4395 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23859886..23860516 | 225..855 | 3140 | 99.8 | Plus |
| 2R | 25286936 | 2R | 23859690..23859830 | 88..228 | 705 | 100 | Plus |
| 2R | 25286936 | 2R | 23859549..23859620 | 19..90 | 360 | 100 | Plus |
| 3L | 28110227 | 3L | 15472742..15472848 | 775..881 | 280 | 84.1 | Plus |
| 2R | 25286936 | 2R | 23860570..23860616 | 854..900 | 235 | 100 | Plus |
| 3L | 28110227 | 3L | 15472527..15472588 | 358..419 | 205 | 88.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:32:02 has no hits.
BO09927.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:14 Download gff for
BO09927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-PC | 705..1596 | 15..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:06 Download gff for
BO09927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10327-PD | 705..1596 | 15..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:43:18 Download gff for
BO09927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 1049..1941 | 14..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:01:06 Download gff for
BO09927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 1049..1941 | 14..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:01:06 Download gff for
BO09927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23859545..23859617 | 14..87 | 97 | <- | Plus |
| 2R | 23859690..23859827 | 88..225 | 100 | <- | Plus |
| 2R | 23859887..23860515 | 226..854 | 99 | <- | Plus |
| 2R | 23860571..23860622 | 855..907 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:43:18 Download gff for
BO09927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19748094..19748145 | 855..907 | 96 | | Plus |
| arm_2R | 19747068..19747140 | 14..87 | 97 | <- | Plus |
| arm_2R | 19747213..19747350 | 88..225 | 100 | <- | Plus |
| arm_2R | 19747410..19748038 | 226..854 | 99 | <- | Plus |
BO09927.5prime Sequence
904 bp (814 high quality bases) assembled on 2006-04-19
> BO09927.5prime
GAAGTTATCAGTCGACATGGATTTCGTTCAAGTGTCGGAGGAGGAGGGCG
ACGAGCCCATCGAGCTGCCGGCTGAGGAGGATGGCACTCTGCTTCTGTCC
ACACTGCAAGCTCAGTTCCCTGGATCCTGCGGTCTGAAGTACCGCAACCT
GGACACGAAGGCTGTGCGCGGAGTTCGCTCCAACGAGGGCAGACTGTTTC
CGCCCAGCGTGGAGTCCGGCTGGGGCGAGTACGCTTACTTTTGCGTCTTT
CCCAAGGAGAACAAGCGCAAGAGCGACGATAACTTGGAGAACTCAACTGC
CAAGACCAAACGCATCGAGACCCGTCTGCGCTGCACTGATCTCATCGTGC
TCGGCTTGCCGTGGAAGACCACAGAGGAGAGCTTGCGTGAGTACTTCGAG
ACCTACGGCGAGGTGCTGATGGCCCAGATCAAGAAGGACACCAAGTCGGG
CCAGTCCAAGGGCTTCGGTTTCGTGCGCTTCGGCTCTTACGATGCCCAGA
TGCGCGTGCTCACCAATCGCCATCTGATCGACGGTCGCTGGTGCGAGGTT
AAGGTGCCCAACTCGAAGGGCATGGGCCACCAGGTGCCTTGCAAGGTGTT
CGTGGGCCGCTGCACCGAGGACATTAACTCGGACGACTTGCGCGAGTATT
TCTCCAAGTTTGGCGAAGTCACTGATGTGTTCATTCCCCGGCCCTTCAGG
GCCTTTAGCTTTGTAACCTTCCTTGATCCCGACGTGGCACAGTCCCTGTG
CGGAGAGGATCACATTATCAAGGGCGTTTCGGTCCATGTGTCGAATGCTG
CTCCAAAGGCCGAGCAGAACAGAAACCAACAGGTCCAGAGCTACAACTAC
AACTCTGCCAACAGCTTTGGCATGCACTCATACCACCCACAGGGTAACCA
CATG
BO09927.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10327-PB | 1596 | TBPH-RB | 1..888 | 17..904 | 4440 | 100 | Plus |
| CG10327-PC | 1596 | TBPH-RC | 1..888 | 17..904 | 4440 | 100 | Plus |
| CG10327-PA | 999 | TBPH-RA | 1..888 | 17..904 | 4440 | 100 | Plus |
| CG10327-PD | 1596 | TBPH-RD | 1..888 | 17..904 | 4440 | 100 | Plus |
| CG7804-PA | 957 | CG7804-RA | 200..342 | 216..358 | 365 | 90.2 | Plus |
| CG7804-PA | 957 | CG7804-RA | 6..92 | 22..108 | 310 | 94.2 | Plus |
| CG7804-PA | 957 | CG7804-RA | 410..487 | 426..503 | 265 | 93.5 | Plus |
| CG7804-PA | 957 | CG7804-RA | 517..608 | 533..624 | 235 | 90.2 | Plus |
| CG7804-PA | 957 | CG7804-RA | 113..193 | 129..209 | 230 | 91.3 | Plus |
| CG7804-PA | 957 | CG7804-RA | 367..395 | 383..411 | 145 | 100 | Plus |
| CG7804-PA | 957 | CG7804-RA | 661..704 | 677..720 | 145 | 93.1 | Plus |
| CG7804-PA | 957 | CG7804-RA | 731..784 | 747..800 | 145 | 90.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TBPH-RF | 1930 | CG10327-RF | 119..1006 | 17..904 | 4440 | 100 | Plus |
| TBPH-RE | 2159 | CG10327-RE | 348..1235 | 17..904 | 4440 | 100 | Plus |
| TBPH-RD | 2156 | CG10327-RD | 345..1232 | 17..904 | 4440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15472742..15473578 | 853..17 | 2385 | 85.7 | Minus |
| 2R | 25286936 | 2R | 23860832..23861144 | 569..257 | 1565 | 100 | Minus |
| 2R | 25286936 | 2R | 23861206..23861446 | 257..17 | 1205 | 100 | Minus |
| 2R | 25286936 | 2R | 23860570..23860777 | 774..567 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 23860385..23860516 | 904..773 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:21:40 has no hits.
BO09927.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:15 Download gff for
BO09927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-PB | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:07 Download gff for
BO09927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10327-PC | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:19:41 Download gff for
BO09927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 336..1232 | 5..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:33:25 Download gff for
BO09927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 336..1232 | 5..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-11 00:33:25 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-22 05:19:41 has no hits.
BO09927.complete Sequence
1627 bp (1627 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631617
> BO09927.complete
GAAGTTATCAGTCGACATGGATTTCGTTCAAGTGTCGGAGGAGGAGGGCG
ACGAGCCCATCGAGCTGCCGGCTGAGGAGGATGGCACTCTGCTTCTGTCC
ACACTGCAAGCTCAGTTCCCTGGATCCTGCGGTCTGAAGTACCGCAACCT
GGACACGAAGGCTGTGCGCGGAGTTCGCTCCAACGAGGGCAGACTGTTTC
CGCCCAGCGTGGAGTCCGGCTGGGGCGAGTACGCTTACTTTTGCGTCTTT
CCCAAGGAGAACAAGCGCAAGAGCGACGATAACTTGGAGAACTCAACTGC
CAAGACCAAACGCATCGAGACCCGTCTGCGCTGCACTGATCTCATCGTGC
TCGGCTTGCCGTGGAAGACCACAGAGGAGAGCTTGCGTGAGTACTTCGAG
ACCTACGGCGAGGTGCTGATGGCCCAGATCAAGAAGGACACCAAGTCGGG
CCAGTCCAAGGGCTTCGGTTTCGTGCGCTTCGGCTCTTACGATGCCCAGA
TGCGCGTGCTCACCAATCGCCATCTGATCGACGGTCGCTGGTGCGAGGTT
AAGGTGCCCAACTCGAAGGGCATGGGCCACCAGGTGCCTTGCAAGGTGTT
CGTGGGCCGCTGCACCGAGGACATTAACTCGGACGACTTGCGCGAGTATT
TCTCCAAGTTTGGCGAAGTCACTGATGTGTTCATTCCCCGGCCCTTCAGG
GCCTTTAGCTTTGTAACCTTCCTTGATCCCGACGTGGCACAGTCCCTGTG
CGGAGAGGATCACATTATCAAGGGCGTTTCGGTCCATGTGTCGAATGCTG
CTCCAAAGGCCGAGCAGAACAGAAACCAACAGGTCCAGAGCTACAACTAC
AACTCTGCCAACAGCTTTGGCATGCACTCATACCACCCACAGGGTAACCA
CATGAATCCGGGCCGCAACGGACACCACCGAGGTAATAACCAACACAATG
CTCACGGCGGTGAGAACGCAATTGTGCCCAATAATCACAACATTGGCACC
GCCGGCTACGGCATGGGTGGCAACAATTACGGCGGCAACTCGGGCGGGGG
CTACCACAACAATGGCGGCAATCACTCCAGTGGCGGGAACACGAACCGCC
AGGACGGCGGCAGCCAGTACAACAGTCGCCAGTCGAATTTTCACGGAATG
AACCAGCCGCATAACGGCAACGTGGGCGGCAGCAACGGCTGGATGAACCG
TGGCCACCTGGACATGCCCAACCTGCAGGCCCTGGGCATCAACTCGCAGG
GATCGAGCTCCTCCAACCAGGGCCAAAACATGAGCAACCAGTCAATGCTC
AATCTCAACTCATTGCCCATCAATCCCGCACTGGTCGCTGCCGCCTTGAA
CCAGTGGAGCCTGGTCGGCAACCAGCTGCAGAACCAAAACCAGGACCAAC
AGGGCGGCAATTTTCTATCTTGGATGGCTCAGAACGGGGGCCACAACAAT
GCCAACAACTTTGGTGGACGGAAGGGGCCGAATAACCCGAACAACAATCC
GGCCGCCAACGGAATAAAGACCGACAACTCGGAGCCACAGAATGGGAACA
CCGGTTGGTCGAACCAGAGCAGCGGATCTCAAAACGCCGCGGAGAAGTCA
AACTTTCTTGCAAGCTTTCTAGACCAT
BO09927.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TBPH-RF | 1596 | CG10327-PF | 1..1593 | 17..1609 | 7965 | 100 | Plus |
| TBPH-RE | 1596 | CG10327-PE | 1..1593 | 17..1609 | 7965 | 100 | Plus |
| TBPH-RD | 1596 | CG10327-PD | 1..1593 | 17..1609 | 7965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TBPH-RF | 1930 | CG10327-RF | 119..1711 | 17..1609 | 7965 | 100 | Plus |
| TBPH-RE | 2159 | CG10327-RE | 348..1940 | 17..1609 | 7965 | 100 | Plus |
| TBPH-RD | 2156 | CG10327-RD | 345..1937 | 17..1609 | 7965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23859886..23860516 | 1403..773 | 3155 | 100 | Minus |
| 3L | 28110227 | 3L | 15472742..15473578 | 853..17 | 2385 | 85.7 | Minus |
| 2R | 25286936 | 2R | 23860832..23861144 | 569..257 | 1565 | 100 | Minus |
| 2R | 25286936 | 2R | 23861206..23861446 | 257..17 | 1205 | 100 | Minus |
| 2R | 25286936 | 2R | 23860570..23860777 | 774..567 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 23859690..23859830 | 1540..1400 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 23859549..23859620 | 1609..1538 | 360 | 100 | Minus |
| 3L | 28110227 | 3L | 15472527..15472588 | 1270..1209 | 205 | 88.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:57:55 has no hits.
BO09927.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:11 Download gff for
BO09927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 1..1596 | 17..1613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:01 Download gff for
BO09927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 324..1929 | 5..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:54 Download gff for
BO09927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 345..1937 | 17..1611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:11 Download gff for
BO09927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 324..1929 | 5..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:59 Download gff for
BO09927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 345..1937 | 17..1611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:59 Download gff for
BO09927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23859547..23859617 | 1541..1611 | 97 | <- | Minus |
| 2R | 23859690..23859827 | 1403..1540 | 100 | <- | Minus |
| 2R | 23859887..23860515 | 774..1402 | 100 | <- | Minus |
| 2R | 23860571..23860775 | 569..773 | 100 | <- | Minus |
| 2R | 23860833..23861143 | 258..568 | 100 | <- | Minus |
| 2R | 23861206..23861446 | 17..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:54 Download gff for
BO09927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19748729..19748969 | 17..257 | 100 | | Minus |
| arm_2R | 19747070..19747140 | 1541..1611 | 97 | <- | Minus |
| arm_2R | 19747213..19747350 | 1403..1540 | 100 | <- | Minus |
| arm_2R | 19747410..19748038 | 774..1402 | 100 | <- | Minus |
| arm_2R | 19748094..19748298 | 569..773 | 100 | <- | Minus |
| arm_2R | 19748356..19748666 | 258..568 | 100 | <- | Minus |
BO09927.pep Sequence
Translation from 16 to 1627
> BO09927.pep
MDFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAV
RGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRI
ETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGF
GFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQVPCKVFVGRCT
EDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCGEDHI
IKGVSVHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMNPGR
NGHHRGNNQHNAHGGENAIVPNNHNIGTAGYGMGGNNYGGNSGGGYHNNG
GNHSSGGNTNRQDGGSQYNSRQSNFHGMNQPHNGNVGGSNGWMNRGHLDM
PNLQALGINSQGSSSSNQGQNMSNQSMLNLNSLPINPALVAAALNQWSLV
GNQLQNQNQDQQGGNFLSWMAQNGGHNNANNFGGRKGPNNPNNNPAANGI
KTDNSEPQNGNTGWSNQSSGSQNAAEKSNFLASFLDH
BO09927.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TBPH-PF | 531 | CG10327-PF | 1..531 | 1..531 | 2886 | 100 | Plus |
| TBPH-PE | 531 | CG10327-PE | 1..531 | 1..531 | 2886 | 100 | Plus |
| TBPH-PD | 531 | CG10327-PD | 1..531 | 1..531 | 2886 | 100 | Plus |
| TBPH-PC | 531 | CG10327-PC | 1..531 | 1..531 | 2886 | 100 | Plus |
| TBPH-PB | 531 | CG10327-PB | 1..531 | 1..531 | 2886 | 100 | Plus |
