Clone Sequence Records
BO09930.3prime Sequence
957 bp (834 high quality bases) assembled on 2006-04-19
> BO09930.3prime
ATGGTCTAGAAAGCTTGCTACATTTGGGTGGAAAAAGTACACACTAGATT
TGGAGGCCAGCAGCTGGCAAATTTGGGAGCATCGTTCGATCAGGGGCTTG
TAGATCTTATCGCAGCCAGGTGTTGGTTCCGCAGCCAGTTTCAAGCCGGA
AGGCACGTCCCTGAAAAACTCGTCGAAGCTGAGTCTCGTCCTACGGCCCG
TGGGCATCATGCAGGAATGGCAATTGCAGGCGGACTCTCGGTGTTCGTAG
AAGGCGTACCTGGCACGAAAGGCGCATCCTAAAAGGCTGACCTCGACACC
GGTTCGCTGGTAAACAGGAGCATTGAATATGTCCGCCACGATCTGCAGGA
CACTTTGACACCTGGAGTCCTCACCCACCACAATTATCTTTGTGTTCGGT
GTGTGGTGGAAGCCCATCTCGTGGGCAATGGACCAGTGGTGCATGATCTG
ACCCTCGATTAGAGCCCGAACCTCAATCTCCGGTGTGGAGAAGCGGTGTA
GGCCACGTATGCACTCCGCCGACATCGGGCTTATGTGCGCATCCCAGCGC
AGAGTGCCCTTGGCAGTGGGTATAATCTCCCGGTCCCGGAAGTGCACAGC
TACATTGCCATTGTTGCCCGATGGCGTGGCGTCTAGCATTTCGTAGAAGT
GCCTCCAACTGCCGCCGGCGACATCCTCACAGATGGCTTTTCGCGTCAAT
CCTCCGTTTTGGAAGCATAGGAGGCCCATGTATTCGTCCCTTCTTGTCGG
ATGGCACATCACGTGGCCGTCCTCCAGCCGCGGAGCTTTCTTTAGAGGCA
TCACTACCACATCACTTGTATCCAGACTGAGCATGAGAAAGTCATTCTCT
ACCAGTAGCCCTGCCAGTTCCGAGGCTTTGCTCCCGGTGGAAGCGACCAC
CATGCAGTCCGGCCTGAAGGTCCAGCGTTTCACGTAGTAGTCCCCGATGC
GTCCTTG
BO09930.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3544-PA | 1719 | CG3544-RA | 778..1716 | 957..19 | 4670 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3544-RB | 4359 | CG3544-RB | 863..1801 | 957..19 | 4680 | 99.9 | Minus |
| CG3544-RA | 1823 | CG3544-RA | 863..1801 | 957..19 | 4680 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 785198..786136 | 957..19 | 4680 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:14:34 has no hits.
BO09930.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:18 Download gff for
BO09930.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-PA | 778..1719 | 15..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:12 Download gff for
BO09930.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-PA | 778..1719 | 15..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:16:07 Download gff for
BO09930.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-RA | 863..1808 | 11..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:55:19 Download gff for
BO09930.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-RA | 863..1808 | 11..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:55:19 Download gff for
BO09930.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 785198..786143 | 11..957 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:16:07 Download gff for
BO09930.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 785198..786143 | 11..957 | 99 | | Minus |
BO09930.5prime Sequence
906 bp (897 high quality bases) assembled on 2006-04-19
> BO09930.5prime
GAAGTTATCAGTCGACATGTGCCACCGCATCAAGCAGGACTACAGTGGCA
ACAGCTACCTGGGCCTCCACTTGGGCACCCAACTCTTCCGCGCCCTGATC
CTCGACTCCAAATTGAACGTTACCTATGTGGCGCAGATCCGCTATGACGT
TGATCTCCCAGAGTTCAAGACAACGAATGGAATACTATCAGATGGCGGTC
CTGGCGAGTTCCTGGCCAATCCGGTAATGTGGGTAAAGGCACTGGACATG
CTGATGGACTGTTTAGTGAAACAGGGAGCGGATATGCACACGGTGGTCTC
TATTGCCGGAGCTGCTCAGCAGCACGGTTGCGTCTTCTGGTCGGAGTTGG
GCTTGAGGCGTCTATGCAATTTGAACGTTAACCTGCGGCTCCACGAGCAG
ATCACGGAGAGCGCCTTCGAATTGACCAGAACGCCTACTTGGCGGGATAG
CTCGACGGACGTGCAGGTCCGTGAAATGGAGCACACCGTCGGGGGTCCCG
CTGAACTGTCGAAAATAACGGGCTCCAGAGCGTACACCAGATTCACGGGT
CCCCAAATACGGAAAGTGTATACCCAGTGCCCGGAGCAGTACGAGAGAAC
TTCCAGGATTTCGCTGATCAGCAGCTTTTTGGCCTCTCTCCTTATCGGAG
GCATTGCCTCCATAGACTACAGCGATGGCTCGGGGATGAACCTGCTCGAC
ATCCGGAAAAAGAAGTGGTCTGCAGCGTGCCTAGACGCCTGTGCTCCTGA
CCTTGCCAGGCGTTTGATGAAGCCCATTCCCTCGTCCCGGCTGCAAGGAC
GCATCGGGGACTACTACGTGAAACGCTGGAACTTCANGCCGGACTGCATG
GTGGTCGCTTCCACCGGGAGCAAAGCCTCGGAACTGGCANGGCTACTGGT
AGAGAA
BO09930.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3544-PA | 1719 | CG3544-RA | 1..890 | 17..906 | 4412 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:44:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3544-RB | 4359 | CG3544-RB | 86..975 | 17..906 | 4428 | 99.8 | Plus |
| CG3544-RA | 1823 | CG3544-RA | 86..975 | 17..906 | 4428 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 784421..785310 | 17..906 | 4428 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:44:09 has no hits.
BO09930.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:19 Download gff for
BO09930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:14 Download gff for
BO09930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:48:14 Download gff for
BO09930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-RA | 86..975 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:18:51 Download gff for
BO09930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-RA | 86..975 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:18:51 Download gff for
BO09930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 784421..785310 | 17..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:48:14 Download gff for
BO09930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 784421..785310 | 17..906 | 99 | | Plus |
BO09930.complete Sequence
1750 bp (1750 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631618
> BO09930.complete
GAAGTTATCAGTCGACATGTGCCACCGCATCAAGCAGGACTACAGTGGCA
ACAGCTACCTGGGCCTCCACTTGGGCACCCAACTCTTCCGCGCCCTGATC
CTCGACTCCAAATTGAACGTTACCTATGTGGCGCAGATCCGCTATGACGT
TGATCTCCCAGAGTTCAAGACAACGAATGGAATACTATCAGATGGCGGTC
CTGGCGAGTTCCTGGCCAATCCGGTAATGTGGGTAAAGGCACTGGACATG
CTGATGGACTGTTTAGTGAAACAGGGAGCGGATATGCACACGGTGGTCTC
TATTGCCGGAGCTGCTCAGCAGCACGGTTGCGTCTTCTGGTCGGAGTTGG
GCTTGAGGCGTCTATGCAATTTGAACGTTAACCTGCGGCTCCACGAGCAG
ATCACGGAGAGCGCCTTCGAATTGACCAGAACGCCTACTTGGCGGGATAG
CTCGACGGACGTGCAGGTCCGTGAAATGGAGCACACCGTCGGGGGTCCCG
CTGAACTGTCGAAAATAACGGGCTCCAGAGCGTACACCAGATTCACGGGT
CCCCAAATACGGAAAGTGTATACCCAGTGCCCGGAGCAGTACGAGAGAAC
TTCCAGGATTTCGCTGATCAGCAGCTTTTTGGCCTCTCTCCTTATCGGAG
GCATTGCCTCCATAGACTACAGCGATGGCTCGGGGATGAACCTGCTCGAC
ATCCGGAAAAAGAAGTGGTCTGCAGCGTGCCTAGACGCCTGTGCTCCTGA
CCTTGCCAGGCGTTTGATGAAGCCCATTCCCTCGTCCCGGCTGCAAGGAC
GCATCGGGGACTACTACGTGAAACGCTGGAACTTCAGGCCGGACTGCATG
GTGGTCGCTTCCACCGGGAGCAAAGCCTCGGAACTGGCAGGGCTACTGGT
AGAGAATGACTTTCTCATGCTCAGTCTGGATACAAGTGATGTGGTAGTGA
TGCCTCTAAAGAAAGCTCCGCGGCTGGAGGACGGCCACGTGATGTGCCAT
CCGACAAGAAGGGACGAATACATGGGCCTCCTATGCTTCCAAAACGGAGG
ATTGACGCGAAAAGCCATCTGTGAGGATGTCGCCGGCGGCAGTTGGAGGC
ACTTCTACGAAATGCTAGACGCCACGCCATCGGGCAACAATGGCAATGTA
GCTGTGCACTTCCGGGACCGGGAGATTATACCCACTGCCAAGGGCACTCT
GCGCTGGGATGCGCACATAAGCCCGATGTCGGCGGAGTGCATACGTGGCC
TACACCGCTTCTCCACACCGGAGATTGAGGTTCGGGCTCTAATCGAGGGT
CAGATCATGCACCACTGGTCCATTGCCCACGAGATGGGCTTCCACCACAC
ACCGAACACAAAGATAATTGTGGTGGGTGAGGACTCCAGGTGTCAAAGTG
TCCTGCAGATCGTGGCGGACATATTCAATGCTCCTGTTTACCAGCGAACC
GGTGTCGAGGTCAGCCTTTTAGGATGCGCCTTTCGTGCCAGGTACGCCTT
CTACGAACACCGAGAGTCCGCCTGCAATTGCCATTCCTGCATGATGCCCA
CGGGCCGTAGGACGAGACTCAGCTTCGACGAGTTTTTCAGGGACGTGCCT
TCCGGCTTGAAACTGGCTGCGGAACCAACACCTGGCTGCGATAAGATCTA
CAAGCCCCTGATCGAACGATGCTCCCAAATTTGCCAGCTGCTGGCCTCCA
AATCTAGTGTGTACTTTTTCCACCCAAATGTAGCAAGCTTTCTAGACCAT
BO09930.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3544-RB | 1719 | CG3544-PB | 1..1716 | 17..1732 | 8580 | 100 | Plus |
| CG3544-RA | 1719 | CG3544-PA | 1..1716 | 17..1732 | 8580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:07:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3544-RB | 4359 | CG3544-RB | 86..1801 | 17..1732 | 8580 | 100 | Plus |
| CG3544-RA | 1823 | CG3544-RA | 86..1801 | 17..1732 | 8580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 784421..786136 | 17..1732 | 8580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:07:39 has no hits.
BO09930.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:44 Download gff for
BO09930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-RA | 1..1719 | 17..1736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:28 Download gff for
BO09930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-RA | 86..1808 | 17..1740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:03 Download gff for
BO09930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-RA | 86..1801 | 17..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:44 Download gff for
BO09930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-RA | 86..1808 | 17..1740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:56 Download gff for
BO09930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-RA | 86..1801 | 17..1734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:56 Download gff for
BO09930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 784421..786136 | 17..1734 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:03 Download gff for
BO09930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 784421..786136 | 17..1734 | 99 | | Plus |
BO09930.pep Sequence
Translation from 16 to 1750
> BO09930.pep
MCHRIKQDYSGNSYLGLHLGTQLFRALILDSKLNVTYVAQIRYDVDLPEF
KTTNGILSDGGPGEFLANPVMWVKALDMLMDCLVKQGADMHTVVSIAGAA
QQHGCVFWSELGLRRLCNLNVNLRLHEQITESAFELTRTPTWRDSSTDVQ
VREMEHTVGGPAELSKITGSRAYTRFTGPQIRKVYTQCPEQYERTSRISL
ISSFLASLLIGGIASIDYSDGSGMNLLDIRKKKWSAACLDACAPDLARRL
MKPIPSSRLQGRIGDYYVKRWNFRPDCMVVASTGSKASELAGLLVENDFL
MLSLDTSDVVVMPLKKAPRLEDGHVMCHPTRRDEYMGLLCFQNGGLTRKA
ICEDVAGGSWRHFYEMLDATPSGNNGNVAVHFRDREIIPTAKGTLRWDAH
ISPMSAECIRGLHRFSTPEIEVRALIEGQIMHHWSIAHEMGFHHTPNTKI
IVVGEDSRCQSVLQIVADIFNAPVYQRTGVEVSLLGCAFRARYAFYEHRE
SACNCHSCMMPTGRRTRLSFDEFFRDVPSGLKLAAEPTPGCDKIYKPLIE
RCSQICQLLASKSSVYFFHPNVASFLDH
BO09930.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3544-PB | 572 | CG3544-PB | 1..572 | 1..572 | 3039 | 100 | Plus |
| CG3544-PA | 572 | CG3544-PA | 1..572 | 1..572 | 3039 | 100 | Plus |
| CG3534-PA | 552 | CG3534-PA | 10..552 | 13..564 | 1335 | 45.7 | Plus |
