Clone Sequence Records
BO09935.3prime Sequence
903 bp (811 high quality bases) assembled on 2006-04-19
> BO09935.3prime
ATGGTCTAGAAAGCTTGCATGGCTTTTCAACGGTTTGATTTTGTTATTGT
TCTGCAGAAGTGGTTGAGTTATATCTGAACCCGATTGGCTGCTAGATTTT
CTTACTTTGAAGCAGCGAATGTGAAAGTGGTCGCACATCTCAGAAACCAC
GCCGTAGCCGTAGTGCCAGTGAGCTAAAGTTGAGAAAATGGTTAGACCAT
AGAGTATCCATCGTTCGGTGTCCGATGTCAGATCTGAGTCGAAGACCTGC
TGGTAGTAGGGAAAACAGCAGACTCCTACTGTGGCGGCCAGTGGCCACAT
GAGCACATTGAAGGCATCGCAACGCGTGTCCGACATTTGGGCCACTATCA
GTCGGCATGCAATATTTGAAAATATCGTGCCATAGAGTATCCATAAAATG
CGTGGCTCCTTGTTAATCACATCGTTTCGCGAAAAAAACGACCAGACTAC
AGTGATCACAAAAAGCCAAACGAAGGCGAAAAATGGTCGCAGCATTTCCC
ACATGGGTCGCATTTTTCCAGTCTTGTTTTTATAGGAAAGATAGATATTT
CTAGCAATAATCGGATGACTGCTGACCATGCCGGAACCAATTAGAACGAA
CTCAAACATATTCGCCATGGTGAAACCATATATGCTAAAGCGATACATCT
CAGGACCAAAGACGGTTGCCACAAACAGCATGCCACTAACTCCCCACATG
GTAAAGTCGTAACCCCAGGGCAAGAACATAACACCCGTATTGTACTTTTC
CACGTGCGTTAAATAGAAGTTGAGAAATACGTTCCAGATCACAAAGAACA
TACGAATCGGTGGGCAGTCGTGTGTGCCGAATAANGAGAATAGGGTAATG
GGTATCAGGGCAGCTGAATAGGAGTCCAATCCATGATCGAATAGCTCTCC
CAG
BO09935.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7149-PA | 1248 | CG7149-RA | 361..1245 | 903..19 | 4306 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7149-RC | 2191 | CG7149-RC | 840..1724 | 903..19 | 4354 | 99.4 | Minus |
CG7149-RA | 2467 | CG7149-RA | 840..1724 | 903..19 | 4354 | 99.4 | Minus |
CG7149-RB | 1902 | CG7149-RB | 840..1637 | 903..106 | 3919 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:21:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7787093..7787304 | 146..357 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 7787833..7788043 | 693..903 | 984 | 97.6 | Plus |
2L | 23513712 | 2L | 7787372..7787552 | 358..538 | 905 | 100 | Plus |
2L | 23513712 | 2L | 7787613..7787768 | 539..694 | 780 | 100 | Plus |
2L | 23513712 | 2L | 7786903..7787032 | 19..148 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:21:14 has no hits.
BO09935.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:28 Download gff for
BO09935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-PA | 361..1248 | 16..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:27 Download gff for
BO09935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-PA | 361..1248 | 16..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:17:30 Download gff for
BO09935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 840..1731 | 12..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:51:36 Download gff for
BO09935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 840..1731 | 12..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:51:36 Download gff for
BO09935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7786896..7787031 | 12..147 | 97 | <- | Plus |
2L | 7787095..7787304 | 148..357 | 100 | <- | Plus |
2L | 7787372..7787552 | 358..538 | 100 | <- | Plus |
2L | 7787613..7787767 | 539..693 | 100 | <- | Plus |
2L | 7787834..7788043 | 694..903 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:17:30 Download gff for
BO09935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7787613..7787767 | 539..693 | 100 | <- | Plus |
arm_2L | 7786896..7787031 | 12..147 | 97 | <- | Plus |
arm_2L | 7787095..7787304 | 148..357 | 100 | <- | Plus |
arm_2L | 7787372..7787552 | 358..538 | 100 | <- | Plus |
arm_2L | 7787834..7788043 | 694..903 | 97 | | Plus |
BO09935.5prime Sequence
929 bp (869 high quality bases) assembled on 2006-04-19
> BO09935.5prime
GAAGTTATCAGTCGACATGGGTTGCATGCGCTACTTGTCGGAGGCTCATT
TGAGGGGCTTCGAGCGTTACAAGTACAGCAGTATAGACACGAGCTTCCTC
AGCGTCTATGTGATGCACCCTTTTTGGAACTACTGTGTGAAGTTTGTTCC
CAAATGGCTGGCGCCCAACGTTTTGACCTTCGTGGGCTTTCTCATGACTG
TCGTCAACTTTATCCTGATAGCTTACTATGATTGGGGTTTCGAAGCAGCC
AATTCAGAGACAGGAAATACGGTGCCCGCCTGGGTTTGGACAGTGGCGGC
CATAAATATACTCATTTACTACAACTTGGATGGCATGGATGGCAAGCAGG
CTCGAAGAACTGGAACGAGTGGACCTCTGGGAGAGCTATTCGATCATGGA
TTGGACTCCTATTCAGCTGCCCTGATACCCATTTACCTATTCTCCTTATT
CGGCACACACGACTTGCCACCGATTCGTATGTTCTTTGTGATCTGGAACG
TATTTCTCAACTTCTATTTAACGCACGTGGAAAAGTACAATACGGGTGTT
ATGTTCTTGCCCTGGGGTTACGACTTTACCATGTGGGGAGTTAGTGGCAT
GCTGTTTGTGGCAACCGTCTTTGGTCCTGAGATGTATCGCTTTAGCATAT
ATGGTTTCACCATGGCGAATATGTTTGAGTTCGTTCTAATTGGTTCCGGC
ATGGTCAGCAGTCATCCGATTATTGCTAGAAATATCTATCTTTCCTATAA
AAACAAGACTGGAAAAATGCGACCCATGTGGGAAATGCTGCGACCATTTT
TCGCCTTCGTTTGGCTTTTTGTGATCACTGTAGTCTGGTCGTTTTTTTCG
CGAAACGATGTGATTAACAAGGAGCCACGCATTTTATGGATACTCTATGG
CACGATATTTTCAAATATTGCATGCCGAC
BO09935.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7149-PA | 1248 | CG7149-RA | 1..913 | 17..929 | 4565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7149-RC | 2191 | CG7149-RC | 480..1392 | 17..929 | 4565 | 100 | Plus |
CG7149-RB | 1902 | CG7149-RB | 480..1392 | 17..929 | 4565 | 100 | Plus |
CG7149-RA | 2467 | CG7149-RA | 480..1392 | 17..929 | 4565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7787833..7788091 | 587..329 | 1295 | 100 | Minus |
2L | 23513712 | 2L | 7788151..7788339 | 329..141 | 945 | 100 | Minus |
2L | 23513712 | 2L | 7787372..7787552 | 922..742 | 905 | 100 | Minus |
2L | 23513712 | 2L | 7787613..7787768 | 741..586 | 780 | 100 | Minus |
2L | 23513712 | 2L | 7788399..7788469 | 142..72 | 355 | 100 | Minus |
2L | 23513712 | 2L | 7790022..7790078 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:54:07 has no hits.
BO09935.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:29 Download gff for
BO09935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-PA | 1..913 | 17..929 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:28 Download gff for
BO09935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-PA | 1..913 | 17..929 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:22:04 Download gff for
BO09935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 480..1392 | 17..929 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:15:33 Download gff for
BO09935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 480..1392 | 17..929 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:15:33 Download gff for
BO09935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7787372..7787552 | 742..922 | 100 | <- | Minus |
2L | 7787613..7787767 | 587..741 | 100 | <- | Minus |
2L | 7787834..7788090 | 330..586 | 100 | <- | Minus |
2L | 7788151..7788337 | 143..329 | 100 | <- | Minus |
2L | 7788399..7788467 | 74..142 | 100 | <- | Minus |
2L | 7790022..7790078 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:22:04 Download gff for
BO09935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7787372..7787552 | 742..922 | 100 | <- | Minus |
arm_2L | 7787613..7787767 | 587..741 | 100 | <- | Minus |
arm_2L | 7787834..7788090 | 330..586 | 100 | <- | Minus |
arm_2L | 7788151..7788337 | 143..329 | 100 | <- | Minus |
arm_2L | 7788399..7788467 | 74..142 | 100 | <- | Minus |
arm_2L | 7790022..7790078 | 17..73 | 100 | | Minus |
BO09935.complete Sequence
1279 bp (1279 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631619
> BO09935.complete
GAAGTTATCAGTCGACATGGGTTGCATGCGCTACTTGTCGGAGGCTCATT
TGAGGGGCTTCGAGCGTTACAAGTACAGCAGTATAGACACGAGCTTCCTC
AGCGTCTATGTGATGCACCCTTTTTGGAACTACTGTGTGAAGTTTGTTCC
CAAATGGCTGGCGCCCAACGTTTTGACCTTCGTGGGCTTTCTCATGACTG
TCGTCAACTTTATCCTGATAGCTTACTATGATTGGGGTTTCGAAGCAGCC
AATTCAGAGACAGGAAATACGGTGCCCGCCTGGGTTTGGACAGTGGCGGC
CATAAATATACTCATTTACTACAACTTGGATGGCATGGATGGCAAGCAGG
CTCGAAGAACTGGAACGAGTGGACCTCTGGGAGAGCTATTCGATCATGGA
TTGGACTCCTATTCAGCTGCCCTGATACCCATTTACCTATTCTCCTTATT
CGGCACACACGACTTGCCACCGATTCGTATGTTCTTTGTGATCTGGAACG
TATTTCTCAACTTCTATTTAACGCACGTGGAAAAGTACAATACGGGTGTT
ATGTTCTTGCCCTGGGGTTACGACTTTACCATGTGGGGAGTTAGTGGCAT
GCTGTTTGTGGCAACCGTCTTTGGTCCTGAGATGTATCGCTTTAGCATAT
ATGGTTTCACCATGGCGAATATGTTTGAGTTCGTTCTAATTGGTTCCGGC
ATGGTCAGCAGTCATCCGATTATTGCTAGAAATATCTATCTTTCCTATAA
AAACAAGACTGGAAAAATGCGACCCATGTGGGAAATGCTGCGACCATTTT
TCGCCTTCGTTTGGCTTTTTGTGATCACTGTAGTCTGGTCGTTTTTTTCG
CGAAACGATGTGATTAACAAGGAGCCACGCATTTTATGGATACTCTATGG
CACGATATTTTCAAATATTGCATGCCGACTGATAGTGGCCCAAATGTCGG
ACACGCGTTGCGATGCCTTCAATGTGCTCATGTGGCCACTGGCCGCCACA
GTAGGAGTCTGCTGTTTTCCCTACTACCAGCAGGTCTTCGACTCAGATCT
GACATCGGACACCGAACGATGGATACTCTATGGTCTAACCATTTTCTCAA
CTTTAGCTCACTGGCACTACGGCTACGGCGTGGTTTCTGAGATGTGCGAC
CACTTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGG
TTCAGATATAACTCAACCACTTCTGCAGAACAATAACAAAATCAAACCGT
TGAAAAGCCATGCAAGCTTTCTAGACCAT
BO09935.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7149-RC | 1248 | CG7149-PC | 1..1245 | 17..1261 | 6225 | 100 | Plus |
CG7149-RA | 1248 | CG7149-PA | 1..1245 | 17..1261 | 6225 | 100 | Plus |
CG7149-RB | 1245 | CG7149-PB | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7149-RC | 2191 | CG7149-RC | 480..1724 | 17..1261 | 6225 | 100 | Plus |
CG7149-RA | 2467 | CG7149-RA | 480..1724 | 17..1261 | 6225 | 100 | Plus |
CG7149-RB | 1902 | CG7149-RB | 480..1637 | 17..1174 | 5790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7787833..7788091 | 587..329 | 1295 | 100 | Minus |
2L | 23513712 | 2L | 7787093..7787304 | 1134..923 | 1060 | 100 | Minus |
2L | 23513712 | 2L | 7788151..7788339 | 329..141 | 945 | 100 | Minus |
2L | 23513712 | 2L | 7787372..7787552 | 922..742 | 905 | 100 | Minus |
2L | 23513712 | 2L | 7787613..7787768 | 741..586 | 780 | 100 | Minus |
2L | 23513712 | 2L | 7786903..7787032 | 1261..1132 | 650 | 100 | Minus |
2L | 23513712 | 2L | 7788399..7788469 | 142..72 | 355 | 100 | Minus |
2L | 23513712 | 2L | 7790022..7790078 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:59 has no hits.
BO09935.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:01 Download gff for
BO09935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 1..1248 | 17..1264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:50 Download gff for
BO09935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 480..1731 | 17..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:32 Download gff for
BO09935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 480..1724 | 17..1263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:02 Download gff for
BO09935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 480..1731 | 17..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:24 Download gff for
BO09935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 480..1724 | 17..1263 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:24 Download gff for
BO09935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7786900..7787031 | 1133..1263 | 98 | <- | Minus |
2L | 7787095..7787304 | 923..1132 | 100 | <- | Minus |
2L | 7787372..7787552 | 742..922 | 100 | <- | Minus |
2L | 7787613..7787767 | 587..741 | 100 | <- | Minus |
2L | 7787834..7788090 | 330..586 | 100 | <- | Minus |
2L | 7788151..7788337 | 143..329 | 100 | <- | Minus |
2L | 7788399..7788467 | 74..142 | 100 | <- | Minus |
2L | 7790022..7790078 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:32 Download gff for
BO09935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7786900..7787031 | 1133..1263 | 98 | <- | Minus |
arm_2L | 7787095..7787304 | 923..1132 | 100 | <- | Minus |
arm_2L | 7787372..7787552 | 742..922 | 100 | <- | Minus |
arm_2L | 7787613..7787767 | 587..741 | 100 | <- | Minus |
arm_2L | 7787834..7788090 | 330..586 | 100 | <- | Minus |
arm_2L | 7788151..7788337 | 143..329 | 100 | <- | Minus |
arm_2L | 7788399..7788467 | 74..142 | 100 | <- | Minus |
arm_2L | 7790022..7790078 | 17..73 | 100 | | Minus |
BO09935.pep Sequence
Translation from 16 to 1279
> BO09935.pep
MGCMRYLSEAHLRGFERYKYSSIDTSFLSVYVMHPFWNYCVKFVPKWLAP
NVLTFVGFLMTVVNFILIAYYDWGFEAANSETGNTVPAWVWTVAAINILI
YYNLDGMDGKQARRTGTSGPLGELFDHGLDSYSAALIPIYLFSLFGTHDL
PPIRMFFVIWNVFLNFYLTHVEKYNTGVMFLPWGYDFTMWGVSGMLFVAT
VFGPEMYRFSIYGFTMANMFEFVLIGSGMVSSHPIIARNIYLSYKNKTGK
MRPMWEMLRPFFAFVWLFVITVVWSFFSRNDVINKEPRILWILYGTIFSN
IACRLIVAQMSDTRCDAFNVLMWPLAATVGVCCFPYYQQVFDSDLTSDTE
RWILYGLTIFSTLAHWHYGYGVVSEMCDHFHIRCFKVRKSSSQSGSDITQ
PLLQNNNKIKPLKSHASFLDH
BO09935.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7149-PC | 415 | CG7149-PC | 1..415 | 1..415 | 2266 | 100 | Plus |
CG7149-PA | 415 | CG7149-PA | 1..415 | 1..415 | 2266 | 100 | Plus |
CG7149-PB | 414 | CG7149-PB | 1..391 | 1..391 | 2129 | 99 | Plus |
CG33116-PA | 427 | CG33116-PA | 12..397 | 5..393 | 1012 | 48.1 | Plus |
bbc-PC | 417 | CG6016-PC | 12..375 | 7..387 | 338 | 26.9 | Plus |