Clone BO09935 Report

Search the DGRC for BO09935

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:99
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG7149-RA
Protein status:BO09935.pep: validated full length
Sequenced Size:1279

Clone Sequence Records

BO09935.3prime Sequence

903 bp (811 high quality bases) assembled on 2006-04-19

> BO09935.3prime
ATGGTCTAGAAAGCTTGCATGGCTTTTCAACGGTTTGATTTTGTTATTGT
TCTGCAGAAGTGGTTGAGTTATATCTGAACCCGATTGGCTGCTAGATTTT
CTTACTTTGAAGCAGCGAATGTGAAAGTGGTCGCACATCTCAGAAACCAC
GCCGTAGCCGTAGTGCCAGTGAGCTAAAGTTGAGAAAATGGTTAGACCAT
AGAGTATCCATCGTTCGGTGTCCGATGTCAGATCTGAGTCGAAGACCTGC
TGGTAGTAGGGAAAACAGCAGACTCCTACTGTGGCGGCCAGTGGCCACAT
GAGCACATTGAAGGCATCGCAACGCGTGTCCGACATTTGGGCCACTATCA
GTCGGCATGCAATATTTGAAAATATCGTGCCATAGAGTATCCATAAAATG
CGTGGCTCCTTGTTAATCACATCGTTTCGCGAAAAAAACGACCAGACTAC
AGTGATCACAAAAAGCCAAACGAAGGCGAAAAATGGTCGCAGCATTTCCC
ACATGGGTCGCATTTTTCCAGTCTTGTTTTTATAGGAAAGATAGATATTT
CTAGCAATAATCGGATGACTGCTGACCATGCCGGAACCAATTAGAACGAA
CTCAAACATATTCGCCATGGTGAAACCATATATGCTAAAGCGATACATCT
CAGGACCAAAGACGGTTGCCACAAACAGCATGCCACTAACTCCCCACATG
GTAAAGTCGTAACCCCAGGGCAAGAACATAACACCCGTATTGTACTTTTC
CACGTGCGTTAAATAGAAGTTGAGAAATACGTTCCAGATCACAAAGAACA
TACGAATCGGTGGGCAGTCGTGTGTGCCGAATAANGAGAATAGGGTAATG
GGTATCAGGGCAGCTGAATAGGAGTCCAATCCATGATCGAATAGCTCTCC
CAG

BO09935.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-PA 1248 CG7149-RA 361..1245 903..19 4306 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-RC 2191 CG7149-RC 840..1724 903..19 4354 99.4 Minus
CG7149-RA 2467 CG7149-RA 840..1724 903..19 4354 99.4 Minus
CG7149-RB 1902 CG7149-RB 840..1637 903..106 3919 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7787093..7787304 146..357 1060 100 Plus
2L 23513712 2L 7787833..7788043 693..903 984 97.6 Plus
2L 23513712 2L 7787372..7787552 358..538 905 100 Plus
2L 23513712 2L 7787613..7787768 539..694 780 100 Plus
2L 23513712 2L 7786903..7787032 19..148 650 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:21:14 has no hits.

BO09935.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:28 Download gff for BO09935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7149-PA 361..1248 16..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:27 Download gff for BO09935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7149-PA 361..1248 16..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:17:30 Download gff for BO09935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 840..1731 12..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:51:36 Download gff for BO09935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 840..1731 12..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:51:36 Download gff for BO09935.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7786896..7787031 12..147 97 <- Plus
2L 7787095..7787304 148..357 100 <- Plus
2L 7787372..7787552 358..538 100 <- Plus
2L 7787613..7787767 539..693 100 <- Plus
2L 7787834..7788043 694..903 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:17:30 Download gff for BO09935.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7787613..7787767 539..693 100 <- Plus
arm_2L 7786896..7787031 12..147 97 <- Plus
arm_2L 7787095..7787304 148..357 100 <- Plus
arm_2L 7787372..7787552 358..538 100 <- Plus
arm_2L 7787834..7788043 694..903 97   Plus

BO09935.5prime Sequence

929 bp (869 high quality bases) assembled on 2006-04-19

> BO09935.5prime
GAAGTTATCAGTCGACATGGGTTGCATGCGCTACTTGTCGGAGGCTCATT
TGAGGGGCTTCGAGCGTTACAAGTACAGCAGTATAGACACGAGCTTCCTC
AGCGTCTATGTGATGCACCCTTTTTGGAACTACTGTGTGAAGTTTGTTCC
CAAATGGCTGGCGCCCAACGTTTTGACCTTCGTGGGCTTTCTCATGACTG
TCGTCAACTTTATCCTGATAGCTTACTATGATTGGGGTTTCGAAGCAGCC
AATTCAGAGACAGGAAATACGGTGCCCGCCTGGGTTTGGACAGTGGCGGC
CATAAATATACTCATTTACTACAACTTGGATGGCATGGATGGCAAGCAGG
CTCGAAGAACTGGAACGAGTGGACCTCTGGGAGAGCTATTCGATCATGGA
TTGGACTCCTATTCAGCTGCCCTGATACCCATTTACCTATTCTCCTTATT
CGGCACACACGACTTGCCACCGATTCGTATGTTCTTTGTGATCTGGAACG
TATTTCTCAACTTCTATTTAACGCACGTGGAAAAGTACAATACGGGTGTT
ATGTTCTTGCCCTGGGGTTACGACTTTACCATGTGGGGAGTTAGTGGCAT
GCTGTTTGTGGCAACCGTCTTTGGTCCTGAGATGTATCGCTTTAGCATAT
ATGGTTTCACCATGGCGAATATGTTTGAGTTCGTTCTAATTGGTTCCGGC
ATGGTCAGCAGTCATCCGATTATTGCTAGAAATATCTATCTTTCCTATAA
AAACAAGACTGGAAAAATGCGACCCATGTGGGAAATGCTGCGACCATTTT
TCGCCTTCGTTTGGCTTTTTGTGATCACTGTAGTCTGGTCGTTTTTTTCG
CGAAACGATGTGATTAACAAGGAGCCACGCATTTTATGGATACTCTATGG
CACGATATTTTCAAATATTGCATGCCGAC

BO09935.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-PA 1248 CG7149-RA 1..913 17..929 4565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-RC 2191 CG7149-RC 480..1392 17..929 4565 100 Plus
CG7149-RB 1902 CG7149-RB 480..1392 17..929 4565 100 Plus
CG7149-RA 2467 CG7149-RA 480..1392 17..929 4565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7787833..7788091 587..329 1295 100 Minus
2L 23513712 2L 7788151..7788339 329..141 945 100 Minus
2L 23513712 2L 7787372..7787552 922..742 905 100 Minus
2L 23513712 2L 7787613..7787768 741..586 780 100 Minus
2L 23513712 2L 7788399..7788469 142..72 355 100 Minus
2L 23513712 2L 7790022..7790078 73..17 285 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:54:07 has no hits.

BO09935.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:29 Download gff for BO09935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7149-PA 1..913 17..929 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:28 Download gff for BO09935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7149-PA 1..913 17..929 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:22:04 Download gff for BO09935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 480..1392 17..929 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:15:33 Download gff for BO09935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 480..1392 17..929 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:15:33 Download gff for BO09935.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7787372..7787552 742..922 100 <- Minus
2L 7787613..7787767 587..741 100 <- Minus
2L 7787834..7788090 330..586 100 <- Minus
2L 7788151..7788337 143..329 100 <- Minus
2L 7788399..7788467 74..142 100 <- Minus
2L 7790022..7790078 17..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:22:04 Download gff for BO09935.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7787372..7787552 742..922 100 <- Minus
arm_2L 7787613..7787767 587..741 100 <- Minus
arm_2L 7787834..7788090 330..586 100 <- Minus
arm_2L 7788151..7788337 143..329 100 <- Minus
arm_2L 7788399..7788467 74..142 100 <- Minus
arm_2L 7790022..7790078 17..73 100   Minus

BO09935.complete Sequence

1279 bp (1279 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631619

> BO09935.complete
GAAGTTATCAGTCGACATGGGTTGCATGCGCTACTTGTCGGAGGCTCATT
TGAGGGGCTTCGAGCGTTACAAGTACAGCAGTATAGACACGAGCTTCCTC
AGCGTCTATGTGATGCACCCTTTTTGGAACTACTGTGTGAAGTTTGTTCC
CAAATGGCTGGCGCCCAACGTTTTGACCTTCGTGGGCTTTCTCATGACTG
TCGTCAACTTTATCCTGATAGCTTACTATGATTGGGGTTTCGAAGCAGCC
AATTCAGAGACAGGAAATACGGTGCCCGCCTGGGTTTGGACAGTGGCGGC
CATAAATATACTCATTTACTACAACTTGGATGGCATGGATGGCAAGCAGG
CTCGAAGAACTGGAACGAGTGGACCTCTGGGAGAGCTATTCGATCATGGA
TTGGACTCCTATTCAGCTGCCCTGATACCCATTTACCTATTCTCCTTATT
CGGCACACACGACTTGCCACCGATTCGTATGTTCTTTGTGATCTGGAACG
TATTTCTCAACTTCTATTTAACGCACGTGGAAAAGTACAATACGGGTGTT
ATGTTCTTGCCCTGGGGTTACGACTTTACCATGTGGGGAGTTAGTGGCAT
GCTGTTTGTGGCAACCGTCTTTGGTCCTGAGATGTATCGCTTTAGCATAT
ATGGTTTCACCATGGCGAATATGTTTGAGTTCGTTCTAATTGGTTCCGGC
ATGGTCAGCAGTCATCCGATTATTGCTAGAAATATCTATCTTTCCTATAA
AAACAAGACTGGAAAAATGCGACCCATGTGGGAAATGCTGCGACCATTTT
TCGCCTTCGTTTGGCTTTTTGTGATCACTGTAGTCTGGTCGTTTTTTTCG
CGAAACGATGTGATTAACAAGGAGCCACGCATTTTATGGATACTCTATGG
CACGATATTTTCAAATATTGCATGCCGACTGATAGTGGCCCAAATGTCGG
ACACGCGTTGCGATGCCTTCAATGTGCTCATGTGGCCACTGGCCGCCACA
GTAGGAGTCTGCTGTTTTCCCTACTACCAGCAGGTCTTCGACTCAGATCT
GACATCGGACACCGAACGATGGATACTCTATGGTCTAACCATTTTCTCAA
CTTTAGCTCACTGGCACTACGGCTACGGCGTGGTTTCTGAGATGTGCGAC
CACTTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGG
TTCAGATATAACTCAACCACTTCTGCAGAACAATAACAAAATCAAACCGT
TGAAAAGCCATGCAAGCTTTCTAGACCAT

BO09935.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-RC 1248 CG7149-PC 1..1245 17..1261 6225 100 Plus
CG7149-RA 1248 CG7149-PA 1..1245 17..1261 6225 100 Plus
CG7149-RB 1245 CG7149-PB 1..1158 17..1174 5790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-RC 2191 CG7149-RC 480..1724 17..1261 6225 100 Plus
CG7149-RA 2467 CG7149-RA 480..1724 17..1261 6225 100 Plus
CG7149-RB 1902 CG7149-RB 480..1637 17..1174 5790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7787833..7788091 587..329 1295 100 Minus
2L 23513712 2L 7787093..7787304 1134..923 1060 100 Minus
2L 23513712 2L 7788151..7788339 329..141 945 100 Minus
2L 23513712 2L 7787372..7787552 922..742 905 100 Minus
2L 23513712 2L 7787613..7787768 741..586 780 100 Minus
2L 23513712 2L 7786903..7787032 1261..1132 650 100 Minus
2L 23513712 2L 7788399..7788469 142..72 355 100 Minus
2L 23513712 2L 7790022..7790078 73..17 285 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:00:59 has no hits.

BO09935.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:01 Download gff for BO09935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 1..1248 17..1264 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:50 Download gff for BO09935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 480..1731 17..1268 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:32 Download gff for BO09935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 480..1724 17..1263 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:02 Download gff for BO09935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 480..1731 17..1268 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:24 Download gff for BO09935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 480..1724 17..1263 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:24 Download gff for BO09935.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7786900..7787031 1133..1263 98 <- Minus
2L 7787095..7787304 923..1132 100 <- Minus
2L 7787372..7787552 742..922 100 <- Minus
2L 7787613..7787767 587..741 100 <- Minus
2L 7787834..7788090 330..586 100 <- Minus
2L 7788151..7788337 143..329 100 <- Minus
2L 7788399..7788467 74..142 100 <- Minus
2L 7790022..7790078 17..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:32 Download gff for BO09935.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7786900..7787031 1133..1263 98 <- Minus
arm_2L 7787095..7787304 923..1132 100 <- Minus
arm_2L 7787372..7787552 742..922 100 <- Minus
arm_2L 7787613..7787767 587..741 100 <- Minus
arm_2L 7787834..7788090 330..586 100 <- Minus
arm_2L 7788151..7788337 143..329 100 <- Minus
arm_2L 7788399..7788467 74..142 100 <- Minus
arm_2L 7790022..7790078 17..73 100   Minus

BO09935.pep Sequence

Translation from 16 to 1279

> BO09935.pep
MGCMRYLSEAHLRGFERYKYSSIDTSFLSVYVMHPFWNYCVKFVPKWLAP
NVLTFVGFLMTVVNFILIAYYDWGFEAANSETGNTVPAWVWTVAAINILI
YYNLDGMDGKQARRTGTSGPLGELFDHGLDSYSAALIPIYLFSLFGTHDL
PPIRMFFVIWNVFLNFYLTHVEKYNTGVMFLPWGYDFTMWGVSGMLFVAT
VFGPEMYRFSIYGFTMANMFEFVLIGSGMVSSHPIIARNIYLSYKNKTGK
MRPMWEMLRPFFAFVWLFVITVVWSFFSRNDVINKEPRILWILYGTIFSN
IACRLIVAQMSDTRCDAFNVLMWPLAATVGVCCFPYYQQVFDSDLTSDTE
RWILYGLTIFSTLAHWHYGYGVVSEMCDHFHIRCFKVRKSSSQSGSDITQ
PLLQNNNKIKPLKSHASFLDH

BO09935.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-PC 415 CG7149-PC 1..415 1..415 2266 100 Plus
CG7149-PA 415 CG7149-PA 1..415 1..415 2266 100 Plus
CG7149-PB 414 CG7149-PB 1..391 1..391 2129 99 Plus
CG33116-PA 427 CG33116-PA 12..397 5..393 1012 48.1 Plus
bbc-PC 417 CG6016-PC 12..375 7..387 338 26.9 Plus