Clone Sequence Records
BO09940.complete Sequence
1702 bp assembled on 2009-07-30
GenBank Submission: KX796929
> BO09940.complete
GAAGTTATCAGTCGACATGCTAGAAGCTGTTATGGCATCGGACATCAACT
GGGATCCTGCTCTTTCCAAGCTGATCAGCACGCTCAAGGAGTCGGAGAAT
CTATCCAATGACCAGGAAATCGACTTCCTGAAGGCCTTGCTTGAATCCAA
GGAACTAAACGCGCTGGTCAATGTCCACACGAAGGTGGCCAAAGTGGGTC
GAGATGATCGTCTGGCCCCGGTGCTCTCCACCTCTGCCCAGGTGTTGTAC
GAAGTCCTGGAGCAGCTGTCCCAGCATTGTCATCTGAACGATGACTGCAA
GGAGGCCTTTCACCTGCTGCAGGACTCTCACCTGCAGCACCTTCTGTTCG
CCCACGATGCGATTGCCCAGAAGGACTTCTACCCGCACCTGCCGGAGGCG
CCTGTCGAAATGGACGAGGACGAGGAGACCATCAAGATTGTGCAGCTCGT
CAAGAGCAACGAGCCCCTGACAGGAGCACAGAGTACGGAGCCAATTGTTG
GCGCCACCATTAAAACGGACGAGGAGTCGGGCAAGATAATCATCGCCAGA
ATTATGCACGGCGGCGCTGCAGATCGCTCCGGATTGATTCACGTCGGCGA
CGAGGTCATCGAGGTCAACAACATCAACGTGGAGGGCAAGACGCCGGGCG
ATGTGCTCACCATACTGCAAAACTCGGAGGGCACCATTACCTTTAAGCTG
GTTCCCGCGGACAACAAGGGCGCCCAGCGCGAGTCCAAAGTGCGGGTGAG
GGCCCACTTTGACTACAATCCGGATGTGGATCCCTACATTCCGTGCAAGG
AGGCGGGTCTGGCCTTCCAGCGCGGCGATGTGTTGCACATTGTGGCCCAA
GACGATGCCTACTGGTGGCAGGCGCGCAAGGAGCACGAGCGCTCGGCAAG
AGCCGGTTTGATTCCCAGCCGGGCGCTGCAGGAGCGCCGTATCCTCCACG
ACCGTACACAGAAGAACGGCACCGATCTGGACTCGAAGCAGAACGACGAC
TTTGACCGCGAGCAGATCGCCACGTACGAGGAGGTGGCCAAGTTGTATCC
ACGGCCCGGAGTCTTCAGGCCCATAGTGCTCATCGGAGCACCCGGCGTGG
GGCGGAATGAATTGCGCCGCCGGCTGATAGCCCGGGATCCCGAGAAGTTC
CGCAGTCCGGTTCCGTACACCACCCGACCAATGCGCACAGGTGAAGTGGC
CGGACGAGAGTACATCTTTGTGGCCCGCGAGAAAATGGACGCGGACATCG
AGGCGGGAAAGTTTGTGGAGCACGGCGAGTACAAGGGCCATTTGTACGGA
ACATCGGCGGAGAGTGTCAAGTCGATTGTGAATGCCGGCTGCGTATGTGT
GCTGAGTCCGCACTACCAGGCGATCAAGACTCTGCGCACAGCTCAGCTGA
AGCCCTTCCTCATCCATGTGAAGCCACCAGAGTTGGACATCCTGAAGGCT
ACGCGAACGGAGGCGCGTGCCAAATCCACATTCGACGAGGCGAATGCCAG
AAGTTTTACGGACGAAGAGTTCGAGGACATGATCAAGTCGGCCGAACGCA
TAGATTTCCTATACGGACACTTCTTCGACGTAGAGCTGGTCAACGGCGAA
CTGGTCAATGCTTTCGAGCAGCTGGTCCAGAATGTCCAGCGACTGGAGAA
CGAACCGGTATGGGCACCATCCATGTGGGTGCAGGCAAGCTTTCTAGACC
AT
BO09940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| metro-RB | 1671 | CG30021-PB | 1..1668 | 17..1684 | 8325 | 99.9 | Plus |
| metro-RD | 1641 | CG30021-PD | 454..1638 | 500..1684 | 5925 | 100 | Plus |
| metro-RA | 1788 | CG30021-PA | 1..973 | 17..989 | 4850 | 99.9 | Plus |
| metro-RD | 1641 | CG30021-PD | 1..453 | 17..469 | 2250 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| metro-RB | 2665 | CG30021-RB | 427..2097 | 14..1684 | 8340 | 99.9 | Plus |
| metro-RD | 2635 | CG30021-RD | 883..2067 | 500..1684 | 5925 | 100 | Plus |
| metro-RA | 2782 | CG30021-RA | 427..1402 | 14..989 | 4865 | 99.9 | Plus |
| metro-RD | 2635 | CG30021-RD | 427..882 | 14..469 | 2265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11227026..11227543 | 1684..1167 | 2590 | 100 | Minus |
| 2R | 25286936 | 2R | 11228116..11228438 | 989..667 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 11229599..11229877 | 337..59 | 1395 | 100 | Minus |
| 2R | 25286936 | 2R | 11227663..11227839 | 1166..990 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 11228509..11228676 | 667..500 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 11229411..11229545 | 469..335 | 675 | 100 | Minus |
| 2R | 25286936 | 2R | 11229940..11229985 | 59..14 | 215 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:34:12 has no hits.
BO09940.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:36 Download gff for
BO09940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skf-RB | 465..2132 | 17..1686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:22 Download gff for
BO09940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| metro-RB | 430..2097 | 17..1686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:39 Download gff for
BO09940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| metro-RB | 430..2097 | 17..1686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:39 Download gff for
BO09940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11228509..11228676 | 500..667 | 100 | <- | Minus |
| 2R | 11229004..11229033 | 470..499 | 100 | <- | Minus |
| 2R | 11229411..11229542 | 338..469 | 100 | <- | Minus |
| 2R | 11229599..11229876 | 60..337 | 100 | <- | Minus |
| 2R | 11229940..11229982 | 17..59 | 97 | | Minus |
| 2R | 11227024..11227543 | 1167..1686 | 99 | <- | Minus |
| 2R | 11227663..11227839 | 990..1166 | 100 | <- | Minus |
| 2R | 11228116..11228437 | 668..989 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:22 Download gff for
BO09940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7114529..7115048 | 1167..1686 | 99 | <- | Minus |
| arm_2R | 7115168..7115344 | 990..1166 | 100 | <- | Minus |
| arm_2R | 7115621..7115942 | 668..989 | 100 | <- | Minus |
| arm_2R | 7116014..7116181 | 500..667 | 100 | <- | Minus |
| arm_2R | 7116509..7116538 | 470..499 | 100 | <- | Minus |
| arm_2R | 7116916..7117047 | 338..469 | 100 | <- | Minus |
| arm_2R | 7117104..7117381 | 60..337 | 100 | <- | Minus |
| arm_2R | 7117445..7117487 | 17..59 | 97 | | Minus |
BO09940.3prime Sequence
853 bp (791 high quality bases) assembled on 2006-04-19
> BO09940.3prime
ATGGTCTAGAAAGCTTGCCTGCACCCACATGGATGGTGCCCATACCGGTT
CGTTCTCCAGTCGCTGGACATTCTGGACCAGCTGCTCGAAAGCATTGACC
AGTTCGCCGTTGACCAGCTCTACGTCGAAGAAGTGTCCGTATAGGAAATC
TATGCGTTCGGCCGACTTGATCATGTCCTCGAACTCTTCGTCCGTAAAAC
TTCTGGCATTCGCCTCGTCGAATGTGGATTTGGCACGCGCCTCCGTTCGC
GTAGCCTTCAGGATGTCCAACTCTGGTGGCTTCACATGGATGAGGAAGGG
CTTCAGCTGAGCTGTGCGCAGAGTCTTGATCGCCTGGTAGTGCGGACTCA
GCACACATACGCAGCCGGCATTCACAATCGACTTGACACTCTCCGCCGAT
GTTCCGTACAAATGGCCCTTGTACTCGCCGTGCTCCACAAACTTTCCCGC
CTCGATGTCCGCGTCCATTTTCTCGCGGGCCACAAAGATGTACTCTCGTC
CGGCCACTTCACCTGTGCGCATTGGTCGGGTGGTGTACGGAACCGGACTG
CGGAACTTCTCGGGATCCCGGGCTATCAGCCGGCGGCGCAATTCATTCCG
CCCCACGCCGGGTGCTCCGATGAGCACTATGGGCCTGAAGACTCCGGGCC
GTGGATACAACTTGGCCACCTCCTCGTACGTGGCGATCTGCTCGCGGTCA
AAGTCGTCGTTCTGCTTCGAGTCCAGATCGGTGCCGTTCTTCTGTGTACG
GTCGTGGAGGATACGGCGCTCCTGCAGCGCCCGGCTGGGAATCAAACCGG
CTCTTGCCGAGCGCTCGTGCTCCTTGCGCGCCTGCCACCAGTAGGCATCG
TCT
BO09940.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30021-PA | 1671 | skf-RA | 834..1668 | 853..19 | 4175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| metro-RD | 2635 | CG30021-RD | 1233..2067 | 853..19 | 4175 | 100 | Minus |
| metro-RB | 2665 | CG30021-RB | 1263..2097 | 853..19 | 4175 | 100 | Minus |
| metro-RC | 2752 | CG30021-RC | 1490..2184 | 713..19 | 3475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11227026..11227543 | 19..536 | 2590 | 100 | Plus |
| 2R | 25286936 | 2R | 11227663..11227839 | 537..713 | 885 | 100 | Plus |
| 2R | 25286936 | 2R | 11228116..11228255 | 714..853 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:49:24 has no hits.
BO09940.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:36 Download gff for
BO09940.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skf-PA | 834..1671 | 18..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:37 Download gff for
BO09940.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30021-PA | 834..1671 | 18..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:13:52 Download gff for
BO09940.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| metro-RB | 1263..2097 | 19..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:38 Download gff for
BO09940.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| metro-RB | 1263..2097 | 19..853 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:38 Download gff for
BO09940.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11228116..11228255 | 714..853 | 100 | | Plus |
| 2R | 11227026..11227543 | 19..536 | 100 | <- | Plus |
| 2R | 11227663..11227839 | 537..713 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:13:52 Download gff for
BO09940.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7114531..7115048 | 19..536 | 100 | <- | Plus |
| arm_2R | 7115168..7115344 | 537..713 | 100 | <- | Plus |
| arm_2R | 7115621..7115760 | 714..853 | 100 | | Plus |
BO09940.5prime Sequence
917 bp (851 high quality bases) assembled on 2006-04-19
> BO09940.5prime
GAAGTTATCAGTCGACATGCTAGAAGCTGTTATGGCATCGGACATCAACT
GGGATCCTGCTCTTTCCAAGCTGATCAGCACGCTCAAGGAGTCGGAGAAT
CTATCCAATGACCAGGAAATCGACTTCCTGAAGGCCTTGCTTGAATCCAA
GGAACTAAACGCGCTGGTCAATGTCCACACGAAGGTGGCCAAAGTGGGTC
GAGATGATCGTCTGGCCCCGGTGCTCTCCACCTCTGCCCAGGTGTTGTAC
GAAGTCCTGGAGCAGCTGTCCCAGCATTGTCATCTGAACGATGACTGCAA
GGAGGCCTTTCACCTGCTGCAGGACTCTCACCTGCAGCACCTTCTGTTCG
CCCACGATGCGATTGCCCAGAAGGACTTCTACCCGCACCTGCCGGAGGCG
CCTGTCGAAATGGACGAGGACGAGGAGACCATCAAGATTGTGCAGCTCGT
CAAGAGCAACGAGCCCCTGACAGGAGCACAGAGTACGGAGCCAATTGTTG
GCGCCACCATTAAAACGGACGAGGAGTCGGGCAAGATAATCATCGCCAGA
ATTATGCACGGCGGCGCTGCAGATCGCTCCGGATTGATTCACGTCGGCGA
CGAGGTCATCGAGGTCAACAACATCAACGTGGAGGGCAAGACGCCGGGCG
ATGTGCTCACCATACTGCAAAACTCGGAGGGCACCATTACCTTTAAGCTG
GTTCCCGCGGACAACAAGGGCGCCCAGCGCGAGTCCAAAGTGCGGGTGAG
GGCCCACTTTGACTACAATCCGGATGTGGATCCCTACATTCCGTGCAAGG
AGGCGGGTCTGGCCTTCCAGCGCGGCGATGTGTTGCACATTGTGGCCCAA
GACGATGCCTACTGGTGGCAGGCGCGCAAGGAGCACGAGCGCTCGGCAAG
AGCCGGTTTGATTCCCA
BO09940.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30021-PA | 1671 | skf-RA | 1..901 | 17..917 | 4480 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| metro-RB | 2665 | CG30021-RB | 427..1330 | 14..917 | 4505 | 99.9 | Plus |
| metro-RA | 2782 | CG30021-RA | 427..1330 | 14..917 | 4505 | 99.9 | Plus |
| metro-RD | 2635 | CG30021-RD | 427..882 | 14..469 | 2265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11229599..11229877 | 337..59 | 1395 | 100 | Minus |
| 2R | 25286936 | 2R | 11228188..11228438 | 917..667 | 1255 | 100 | Minus |
| 2R | 25286936 | 2R | 11228509..11228676 | 667..500 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 11229411..11229545 | 469..335 | 675 | 100 | Minus |
| 2R | 25286936 | 2R | 11229940..11229985 | 59..14 | 215 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:12:21 has no hits.
BO09940.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:37 Download gff for
BO09940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skf-PA | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:38 Download gff for
BO09940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30021-PA | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:38:29 Download gff for
BO09940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| metro-RA | 420..1329 | 4..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:47:25 Download gff for
BO09940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| metro-RA | 420..1329 | 4..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:47:25 Download gff for
BO09940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11228509..11228676 | 500..667 | 100 | <- | Minus |
| 2R | 11229004..11229033 | 470..499 | 100 | <- | Minus |
| 2R | 11229411..11229542 | 338..469 | 100 | <- | Minus |
| 2R | 11229599..11229876 | 60..337 | 100 | <- | Minus |
| 2R | 11229940..11229992 | 4..59 | 91 | | Minus |
| 2R | 11228189..11228437 | 668..916 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:38:29 Download gff for
BO09940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7115694..7115942 | 668..916 | 100 | <- | Minus |
| arm_2R | 7116014..7116181 | 500..667 | 100 | <- | Minus |
| arm_2R | 7116509..7116538 | 470..499 | 100 | <- | Minus |
| arm_2R | 7116916..7117047 | 338..469 | 100 | <- | Minus |
| arm_2R | 7117104..7117381 | 60..337 | 100 | <- | Minus |
| arm_2R | 7117445..7117497 | 4..59 | 91 | | Minus |
BO09940.pep Sequence
Translation from 16 to 1702
> BO09940.pep
MLEAVMASDINWDPALSKLISTLKESENLSNDQEIDFLKALLESKELNAL
VNVHTKVAKVGRDDRLAPVLSTSAQVLYEVLEQLSQHCHLNDDCKEAFHL
LQDSHLQHLLFAHDAIAQKDFYPHLPEAPVEMDEDEETIKIVQLVKSNEP
LTGAQSTEPIVGATIKTDEESGKIIIARIMHGGAADRSGLIHVGDEVIEV
NNINVEGKTPGDVLTILQNSEGTITFKLVPADNKGAQRESKVRVRAHFDY
NPDVDPYIPCKEAGLAFQRGDVLHIVAQDDAYWWQARKEHERSARAGLIP
SRALQERRILHDRTQKNGTDLDSKQNDDFDREQIATYEEVAKLYPRPGVF
RPIVLIGAPGVGRNELRRRLIARDPEKFRSPVPYTTRPMRTGEVAGREYI
FVAREKMDADIEAGKFVEHGEYKGHLYGTSAESVKSIVNAGCVCVLSPHY
QAIKTLRTAQLKPFLIHVKPPELDILKATRTEARAKSTFDEANARSFTDE
EFEDMIKSAERIDFLYGHFFDVELVNGELVNAFEQLVQNVQRLENEPVWA
PSMWVQASFLDH
BO09940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| metro-PB | 556 | CG30021-PB | 1..556 | 1..556 | 2874 | 100 | Plus |
| metro-PA | 595 | CG30021-PA | 1..595 | 1..556 | 2821 | 93.3 | Plus |
| metro-PD | 546 | CG30021-PD | 1..546 | 1..556 | 2804 | 98.2 | Plus |
| metro-PC | 585 | CG30021-PC | 1..585 | 1..556 | 2751 | 91.6 | Plus |
| CASK-PB | 898 | CG6703-PB | 346..897 | 15..555 | 715 | 31.9 | Plus |
