Clone Sequence Records
BO09943.3prime Sequence
933 bp (859 high quality bases) assembled on 2006-04-19
> BO09943.3prime
ATGGTCTAGAAAGCTTGCGTGGACGGCGATGGCAGACGGCGGGCGGAATA
GACCGTCGAGAGTGTTGTACAGGTGGTTCTCGATGCTGTTGCTCTTGTGT
ATTTTGGTGTTTTGGGTGGTGCATTTGTGCTGTAACCTGCTAGCTAGTGG
CTGCTCTTTCTTCAACAGCTTGTCCTCCTTTTCGCGGCGCCGCACCTCCA
CGATGTACTCGTTGAAGAGACTCTCTCGTTCGCGAACCTTCTCGATGGCC
CGATACCGTTCATCCTTGGCGTTCCTCTGGCTAAACTCCGAGAATGAGGA
TTTTCCGTGCAGCCTGGCTTCTTCCATTAGGCTGCGGAAGTCCTCCCGCT
TCTGGCGCATCTTGTTCCGCTTCTCCTTACGCTCCTCCTCGGCCCGATCC
TTCACATACTTTTCAAATACCTGTTTGCGTTCCTTCGAAGTCAGCAGAAG
ATACCGCGGGTCGAACACGATCTTGTGAAGCTCCTTCTCCCAAGTGCTGA
AAGCCGATACGTCCTTCTCTCGAAGCATTTCCTTGAATTGGGTGACGCGC
ATTTCTAGTGGTACTAAGGCCCGCTCCTTGGCCGCCCGCTGCTCAGCCTC
TAGGGCGGCATCCTCTGCCCGCTTCGACTTGGAAATCATTCGAACTCGTT
TGGTTGGCACCTCTTCCACACTAGACTCAGACTCTGTGCGTATCTTGATA
ACCTCGTCGTCGTCATCATCATCCGCATCCACCCTCTGCACCTGATCCAG
TTGCTGGGCTTGAACTTGCGATTTAGCCTGCTCTTGATTTGCTTCCTCGC
CGGACTTCTGTTCGGCTTCAGCCGACTTCTCTTTGCGAGTCTTCAGTTGC
TCCGGACGTTCGTTTACCGCTTTTGTCACGTCCTCACGATTTCACAAGTC
CTCGGGGCGATCCCAAACCGAAGTCCTAGTTGA
BO09943.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33097-PA | 2292 | CG33097-RA | 1475..2289 | 833..19 | 4075 | 100 | Minus |
CG33097-PB | 2010 | CG33097-RB | 1475..2006 | 833..302 | 2660 | 100 | Minus |
CG33097-PA | 2292 | CG33097-RA | 1375..1430 | 933..878 | 230 | 96.4 | Minus |
CG33097-PB | 2010 | CG33097-RB | 1375..1430 | 933..878 | 230 | 96.4 | Minus |
CG33097-PA | 2292 | CG33097-RA | 1435..1471 | 873..837 | 185 | 100 | Minus |
CG33097-PB | 2010 | CG33097-RB | 1435..1471 | 873..837 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42724-RI | 4036 | CG42724-RI | 1479..2393 | 933..19 | 4455 | 99.3 | Minus |
CG42724-RE | 2500 | CG42724-RE | 1479..2393 | 933..19 | 4455 | 99.3 | Minus |
CG42724-RL | 4153 | CG42724-RL | 1479..2393 | 933..19 | 4455 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6365954..6366287 | 302..635 | 1670 | 100 | Plus |
3R | 32079331 | 3R | 6366348..6366645 | 636..933 | 1355 | 97 | Plus |
3R | 32079331 | 3R | 6365004..6365154 | 151..301 | 755 | 100 | Plus |
3R | 32079331 | 3R | 6364594..6364727 | 19..152 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:51:25 has no hits.
BO09943.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:41 Download gff for
BO09943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33097-PA | 1376..2292 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:45 Download gff for
BO09943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33097-PA | 1376..2292 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:14:54 Download gff for
BO09943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42724-RE | 1480..2399 | 12..932 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:19 Download gff for
BO09943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42724-RL | 1480..2399 | 12..932 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:19 Download gff for
BO09943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6366348..6366644 | 636..932 | 97 | | Plus |
3R | 6364588..6364725 | 12..150 | 97 | <- | Plus |
3R | 6365004..6365154 | 151..301 | 100 | <- | Plus |
3R | 6365954..6366287 | 302..635 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:14:54 Download gff for
BO09943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2190310..2190447 | 12..150 | 97 | <- | Plus |
arm_3R | 2190726..2190876 | 151..301 | 100 | <- | Plus |
arm_3R | 2191676..2192009 | 302..635 | 100 | <- | Plus |
arm_3R | 2192070..2192366 | 636..932 | 97 | | Plus |
BO09943.5prime Sequence
931 bp (792 high quality bases) assembled on 2006-04-19
> BO09943.5prime
GAAGTTATCAGTCGACATGGATGCGAGCTTAGAGGAGAGCATGGATAGCG
ATGGCGCCAGTTCGCCGATTACCAAGACGGAGGCAACGGAATCTCCGCCA
GAAGCGGGTCTCAATGGAAACGGCAGTGGTAGTGGTAGTACCAGCCAGGA
GACCCCAAATTATGGCGTTGCTATACTCAAGGAAAAACCCAGCGAGGCCC
ATAGGAGCAAGCCCTTCAATGCGTTTAGTGGTCGTCCCATCGGGGAGCAC
ACCGCCCAGCAGCAGGCGCTGCAGCAACAACAACTGCAGCAACAACAACA
GCCACAGCAGCCGCAGCAACAAGCTCCTTCCGGAGCAAATGGAGTCACAG
GACCCCCGGAAATCTGGGTGGAAACCAAGGCGGAGGACGGTCGCTCATAT
TATTACCATGCGGTAACTAGGGAAACCACTTGGTCTCGACCCGATGGCCC
CGCTGTCAAGATAATGACCCAGGCAGAGGTGGAGGAGATGGCCAAGCGAC
CTGCCCAGGCCGCGAAAACGGAAGCCAAGGCAGGCGAGACGTCGGTCGAG
ATTCCGCCAGTGTCGTCACATCTTACCTCACAACCTCCGCCGCACCTGAT
GAGCCAGCCACCACCCAATGCGGCAGCACCGCTGCTTTCCCAGCCACCAC
CCAATGTACGGCAACAGCCACCACCAATGTTCCAGCCACCTGGAATGCAG
GCGCCTCCTGGGTTCGGACAGCCGCCGTTTTGTATGCCACCTCCAACTTA
CGGATTTCCTGGAGGACCGGCACCAGCTGGGGCACCTTGGGGCGTGGGCA
TTCCGCCTTGGCAGCAACAGCAGCACATGCAAGACAAGCCAGCCAAGTCG
CTAATCATTAAGCCGGGTGTTATCGATCCGGCGGTTATAGCGCGAGCAGC
AGAGTGGTCAGAGCATCGTGCTCCCGATGGA
BO09943.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33097-PA | 2292 | CG33097-RA | 1..915 | 17..931 | 4575 | 100 | Plus |
CG33097-PB | 2010 | CG33097-RB | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42724-RK | 3589 | CG42724-RK | 104..1019 | 16..931 | 4580 | 100 | Plus |
CG42724-RI | 4036 | CG42724-RI | 104..1019 | 16..931 | 4580 | 100 | Plus |
CG42724-RG | 2805 | CG42724-RG | 104..1019 | 16..931 | 4580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6367105..6367833 | 931..203 | 3645 | 100 | Minus |
3R | 32079331 | 3R | 6367897..6368086 | 205..16 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:03:37 has no hits.
BO09943.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:42 Download gff for
BO09943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33097-PA | 1..914 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:46 Download gff for
BO09943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33097-PB | 1..914 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:40:10 Download gff for
BO09943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42724-RG | 100..1018 | 11..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:46:30 Download gff for
BO09943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42724-RG | 100..1018 | 11..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:46:30 Download gff for
BO09943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6367106..6367831 | 205..930 | 100 | <- | Minus |
3R | 6367898..6368090 | 11..204 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:40:10 Download gff for
BO09943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2192828..2193553 | 205..930 | 100 | <- | Minus |
arm_3R | 2193620..2193812 | 11..204 | 98 | | Minus |
BO09943.complete Sequence
2323 bp assembled on 2006-10-10
GenBank Submission: FJ631620
> BO09943.complete
GAAGTTATCAGTCGACATGGATGCGAGCTTAGAGGAGAGCATGGATAGCG
ATGGCGCCAGTTCGCCGATTACCAAGACGGAGGCAACGGAATCTCCGCCA
GAAGCGGGTCTCAATGGAAACGGCAGTGGTAGTGGTAGTACCAGCCAGGA
GACCCCAAATTATGGCGTTGCTATACTCAAGGAAAAACCCAGCGAGGCCC
ATAGGAGCAAGCCCTTCAATGCGTTTAGTGGTCGTCCCATCGGGGAGCAC
ACCGCCCAGCAGCAGGCGCTGCAGCAACAACAACTGCAGCAACAACAACA
GCCACAGCAGCCGCAGCAACAAGCTCCTTCCGGAGCAAATGGAGTCACAG
GACCCCCGGAAATCTGGGTGGAAACCAAGGCGGAGGACGGTCGCTCATAT
TATTACCATGCGGTAACTAGGGAAACCACTTGGTCTCGACCCGATGGCCC
CGCTGTCAAGATAATGACCCAGGCAGAGGTGGAGGAGATGGCCAAGCGAC
CTGCCCAGGCCGCGAAAACGGAAGCCAAGGCAGGCGAGACGTCGGTCGAG
ATTCCGCCAGTGTCGTCACATCTTACCTCACAACCTCCGCCGCACCTGAT
GAGCCAGCCACCACCCAATGCGGCAGCACCGCTGCTTTCCCAGCCACCAC
CCAATGTACGGCAACAGCCACCACCAATGTTCCAGCCACCTGGAATGCAG
GCGCCTCCTGGGTTCGGACAGCCGCCGTTTTGTATGCCACCTCCAACTTA
CGGATTTCCTGGAGGACCGGCACCAGCTGGGGCACCTTGGGGCGTGGGCA
TTCCGCCTTGGCAGCAACAGCAGCACATGCAAGACAAGCCAGCCAAGTCG
CTAATCATTAAGCCGGGTGTTATCGATCCGGCGGTTATAGCGCGAGCAGC
AGAGTGGTCAGAGCATCGTGCTCCCGATGGAAGACCGTACTATTTCCACG
CCGGTCGAGGAGAGAGTGTCTGGGAGAAACCGCAGGCGCTGAGGGACATG
GAGGCCGCTCGCATGGCTGCCCACTCGGGCGTTGCGCCCGCTGTGGCAAC
AGCTCCGTCGGGACTACCACCACACTTGCTACCCAACCCTATGATGCATA
TGCCACCAGGATCAGGGCCGCCGGGATTTGATCCGCATGCTGCTTTTGCG
GCTGCTGCTGCAGCAATGAAAGCCAATTCGGAAAACACTAAGGCTGCACA
GGCAGCTGCTTTGGAGAAAGAGGCTAAAAAGGCGGCGGAGGAGAAGCGAA
AAAAGGAGGAGGAGCAGAAGAAGGCTGCGGCATCAGCCAAGCAAACGGAC
AAGAGTCGACCTGTGACAAGTACGCCCATCGCTGGAACGCCATGGTGTGT
CGTATGGACTGGAGATTCCCGCGTCTTCTTTTACAATCCGTCAACTAGGA
CTTCGGTTTGGGATCGCCCCGAGGACTTGTTGAATCGTGAGGACGTTGAC
AAAGCGGTAAACGAACGTCCGGAGCAACTGAAGACTCCGCAAGAGAAGTC
GGCTGAAGCCGAACAGAAGTCCGGCGAGGAAGCAAATCAAGAGCAGGCTA
AATCGCAAGTTCAAGCCCAGCAACTGGATCAGGTGCAGAGGGTGGATGCG
GATGATGATGACGACGACGAGGTTATCAAGATACGCACAGAGTCTGAGTC
TAGTGTGGAAGAGGTGCCAACCAAACGAGTTCGAATGATTTCCAAGTCGA
AGCGGGCAGAGGATGCCGCCCTAGAGGCTGAGCAGCGGGCGGCCAAGGAG
CGGGCCTTAGTACCACTAGAAATGCGCGTCACCCAATTCAAGGAAATGCT
TCGAGAGAAGGACGTATCGGCTTTCAGCACTTGGGAGAAGGAGCTTCACA
AGATCGTGTTCGACCCGCGGTATCTTCTGCTGACTTCGAAGGAACGCAAA
CAGGTATTTGAAAAGTATGTGAAGGATCGGGCCGAGGAGGAGCGTAAGGA
GAAGCGGAACAAGATGCGCCAGAAGCGGGAGGACTTCCGCAGCCTAATGG
AAGAAGCCAGGCTGCACGGAAAATCCTCATTCTCGGAGTTTAGCCAGAGG
AACGCCAAGGATGAACGGTATCGGGCCATCGAGAAGGTTCGCGAACGAGA
GAGTCTCTTCAACGAGTACATCGTGGAGGTGCGGCGCCGCGAAAAGGAGG
ACAAGCTGTTGAAGAAAGAGCAGCCACTAGCTAGCAGGTTACAGCACAAA
TGCACCACCCAAAACACCAAAATACACAAGAGCAACAGCATCGAGAACCA
CCTGTACAACACTCTCGACGGTCTATTCCGCCCGCCGTCTGCCATCGCCG
TCCACGCAAGCTTTCTAGACCAT
BO09943.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:01:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42724-RI | 2292 | CG42724-PI | 1..2289 | 17..2305 | 11445 | 100 | Plus |
CG42724-RE | 2292 | CG42724-PE | 1..2289 | 17..2305 | 11445 | 100 | Plus |
CG42724-RL | 2292 | CG42724-PL | 1..2289 | 17..2305 | 11445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42724-RI | 4036 | CG42724-RI | 104..2393 | 16..2305 | 11450 | 100 | Plus |
CG42724-RE | 2500 | CG42724-RE | 104..2393 | 16..2305 | 11450 | 100 | Plus |
CG42724-RL | 4153 | CG42724-RL | 104..2393 | 16..2305 | 11450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6366348..6367833 | 1688..203 | 7430 | 100 | Minus |
3R | 32079331 | 3R | 6365954..6366287 | 2022..1689 | 1670 | 100 | Minus |
3R | 32079331 | 3R | 6367897..6368086 | 205..16 | 950 | 100 | Minus |
3R | 32079331 | 3R | 6365004..6365154 | 2173..2023 | 755 | 100 | Minus |
3R | 32079331 | 3R | 6364594..6364727 | 2305..2172 | 670 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 15:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2383 | 1164..1129 | 117 | 80.6 | Minus |
BO09943.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:46 Download gff for
BO09943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33097-RA | 1..2292 | 17..2308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:01 Download gff for
BO09943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33097-RA | 199..2498 | 11..2312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:29 Download gff for
BO09943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42724-RE | 105..2393 | 17..2307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:47 Download gff for
BO09943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33097-RA | 199..2498 | 11..2312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:59 Download gff for
BO09943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42724-RL | 105..2393 | 17..2307 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:59 Download gff for
BO09943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6364591..6364725 | 2174..2307 | 98 | <- | Minus |
3R | 6365004..6365154 | 2023..2173 | 100 | <- | Minus |
3R | 6365954..6366287 | 1689..2022 | 100 | <- | Minus |
3R | 6366348..6367831 | 205..1688 | 100 | <- | Minus |
3R | 6367898..6368085 | 17..204 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:29 Download gff for
BO09943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2193620..2193807 | 17..204 | 100 | | Minus |
arm_3R | 2190313..2190447 | 2174..2307 | 98 | <- | Minus |
arm_3R | 2190726..2190876 | 2023..2173 | 100 | <- | Minus |
arm_3R | 2191676..2192009 | 1689..2022 | 100 | <- | Minus |
arm_3R | 2192070..2193553 | 205..1688 | 100 | <- | Minus |
BO09943.pep Sequence
Translation from 16 to 2323
> BO09943.pep
MDASLEESMDSDGASSPITKTEATESPPEAGLNGNGSGSGSTSQETPNYG
VAILKEKPSEAHRSKPFNAFSGRPIGEHTAQQQALQQQQLQQQQQPQQPQ
QQAPSGANGVTGPPEIWVETKAEDGRSYYYHAVTRETTWSRPDGPAVKIM
TQAEVEEMAKRPAQAAKTEAKAGETSVEIPPVSSHLTSQPPPHLMSQPPP
NAAAPLLSQPPPNVRQQPPPMFQPPGMQAPPGFGQPPFCMPPPTYGFPGG
PAPAGAPWGVGIPPWQQQQHMQDKPAKSLIIKPGVIDPAVIARAAEWSEH
RAPDGRPYYFHAGRGESVWEKPQALRDMEAARMAAHSGVAPAVATAPSGL
PPHLLPNPMMHMPPGSGPPGFDPHAAFAAAAAAMKANSENTKAAQAAALE
KEAKKAAEEKRKKEEEQKKAAASAKQTDKSRPVTSTPIAGTPWCVVWTGD
SRVFFYNPSTRTSVWDRPEDLLNREDVDKAVNERPEQLKTPQEKSAEAEQ
KSGEEANQEQAKSQVQAQQLDQVQRVDADDDDDDEVIKIRTESESSVEEV
PTKRVRMISKSKRAEDAALEAEQRAAKERALVPLEMRVTQFKEMLREKDV
SAFSTWEKELHKIVFDPRYLLLTSKERKQVFEKYVKDRAEEERKEKRNKM
RQKREDFRSLMEEARLHGKSSFSEFSQRNAKDERYRAIEKVRERESLFNE
YIVEVRRREKEDKLLKKEQPLASRLQHKCTTQNTKIHKSNSIENHLYNTL
DGLFRPPSAIAVHASFLDH
BO09943.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42724-PI | 763 | CG42724-PI | 1..763 | 1..763 | 3987 | 100 | Plus |
CG42724-PE | 763 | CG42724-PE | 1..763 | 1..763 | 3987 | 100 | Plus |
CG42724-PL | 763 | CG42724-PL | 1..763 | 1..763 | 3987 | 100 | Plus |
CG42724-PM | 761 | CG42724-PM | 1..742 | 1..729 | 3754 | 97.6 | Plus |
CG42724-PK | 1123 | CG42724-PK | 1..719 | 1..719 | 3752 | 100 | Plus |