Clone BO09943 Report

Search the DGRC for BO09943

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:99
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG42724-RE
Protein status:BO09943.pep: validated full length
Sequenced Size:2323

Clone Sequence Records

BO09943.3prime Sequence

933 bp (859 high quality bases) assembled on 2006-04-19

> BO09943.3prime
ATGGTCTAGAAAGCTTGCGTGGACGGCGATGGCAGACGGCGGGCGGAATA
GACCGTCGAGAGTGTTGTACAGGTGGTTCTCGATGCTGTTGCTCTTGTGT
ATTTTGGTGTTTTGGGTGGTGCATTTGTGCTGTAACCTGCTAGCTAGTGG
CTGCTCTTTCTTCAACAGCTTGTCCTCCTTTTCGCGGCGCCGCACCTCCA
CGATGTACTCGTTGAAGAGACTCTCTCGTTCGCGAACCTTCTCGATGGCC
CGATACCGTTCATCCTTGGCGTTCCTCTGGCTAAACTCCGAGAATGAGGA
TTTTCCGTGCAGCCTGGCTTCTTCCATTAGGCTGCGGAAGTCCTCCCGCT
TCTGGCGCATCTTGTTCCGCTTCTCCTTACGCTCCTCCTCGGCCCGATCC
TTCACATACTTTTCAAATACCTGTTTGCGTTCCTTCGAAGTCAGCAGAAG
ATACCGCGGGTCGAACACGATCTTGTGAAGCTCCTTCTCCCAAGTGCTGA
AAGCCGATACGTCCTTCTCTCGAAGCATTTCCTTGAATTGGGTGACGCGC
ATTTCTAGTGGTACTAAGGCCCGCTCCTTGGCCGCCCGCTGCTCAGCCTC
TAGGGCGGCATCCTCTGCCCGCTTCGACTTGGAAATCATTCGAACTCGTT
TGGTTGGCACCTCTTCCACACTAGACTCAGACTCTGTGCGTATCTTGATA
ACCTCGTCGTCGTCATCATCATCCGCATCCACCCTCTGCACCTGATCCAG
TTGCTGGGCTTGAACTTGCGATTTAGCCTGCTCTTGATTTGCTTCCTCGC
CGGACTTCTGTTCGGCTTCAGCCGACTTCTCTTTGCGAGTCTTCAGTTGC
TCCGGACGTTCGTTTACCGCTTTTGTCACGTCCTCACGATTTCACAAGTC
CTCGGGGCGATCCCAAACCGAAGTCCTAGTTGA

BO09943.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG33097-PA 2292 CG33097-RA 1475..2289 833..19 4075 100 Minus
CG33097-PB 2010 CG33097-RB 1475..2006 833..302 2660 100 Minus
CG33097-PA 2292 CG33097-RA 1375..1430 933..878 230 96.4 Minus
CG33097-PB 2010 CG33097-RB 1375..1430 933..878 230 96.4 Minus
CG33097-PA 2292 CG33097-RA 1435..1471 873..837 185 100 Minus
CG33097-PB 2010 CG33097-RB 1435..1471 873..837 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG42724-RI 4036 CG42724-RI 1479..2393 933..19 4455 99.3 Minus
CG42724-RE 2500 CG42724-RE 1479..2393 933..19 4455 99.3 Minus
CG42724-RL 4153 CG42724-RL 1479..2393 933..19 4455 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6365954..6366287 302..635 1670 100 Plus
3R 32079331 3R 6366348..6366645 636..933 1355 97 Plus
3R 32079331 3R 6365004..6365154 151..301 755 100 Plus
3R 32079331 3R 6364594..6364727 19..152 670 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:51:25 has no hits.

BO09943.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:41 Download gff for BO09943.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33097-PA 1376..2292 16..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:45 Download gff for BO09943.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33097-PA 1376..2292 16..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:14:54 Download gff for BO09943.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42724-RE 1480..2399 12..932 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:19 Download gff for BO09943.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42724-RL 1480..2399 12..932 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:19 Download gff for BO09943.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6366348..6366644 636..932 97   Plus
3R 6364588..6364725 12..150 97 <- Plus
3R 6365004..6365154 151..301 100 <- Plus
3R 6365954..6366287 302..635 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:14:54 Download gff for BO09943.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2190310..2190447 12..150 97 <- Plus
arm_3R 2190726..2190876 151..301 100 <- Plus
arm_3R 2191676..2192009 302..635 100 <- Plus
arm_3R 2192070..2192366 636..932 97   Plus

BO09943.5prime Sequence

931 bp (792 high quality bases) assembled on 2006-04-19

> BO09943.5prime
GAAGTTATCAGTCGACATGGATGCGAGCTTAGAGGAGAGCATGGATAGCG
ATGGCGCCAGTTCGCCGATTACCAAGACGGAGGCAACGGAATCTCCGCCA
GAAGCGGGTCTCAATGGAAACGGCAGTGGTAGTGGTAGTACCAGCCAGGA
GACCCCAAATTATGGCGTTGCTATACTCAAGGAAAAACCCAGCGAGGCCC
ATAGGAGCAAGCCCTTCAATGCGTTTAGTGGTCGTCCCATCGGGGAGCAC
ACCGCCCAGCAGCAGGCGCTGCAGCAACAACAACTGCAGCAACAACAACA
GCCACAGCAGCCGCAGCAACAAGCTCCTTCCGGAGCAAATGGAGTCACAG
GACCCCCGGAAATCTGGGTGGAAACCAAGGCGGAGGACGGTCGCTCATAT
TATTACCATGCGGTAACTAGGGAAACCACTTGGTCTCGACCCGATGGCCC
CGCTGTCAAGATAATGACCCAGGCAGAGGTGGAGGAGATGGCCAAGCGAC
CTGCCCAGGCCGCGAAAACGGAAGCCAAGGCAGGCGAGACGTCGGTCGAG
ATTCCGCCAGTGTCGTCACATCTTACCTCACAACCTCCGCCGCACCTGAT
GAGCCAGCCACCACCCAATGCGGCAGCACCGCTGCTTTCCCAGCCACCAC
CCAATGTACGGCAACAGCCACCACCAATGTTCCAGCCACCTGGAATGCAG
GCGCCTCCTGGGTTCGGACAGCCGCCGTTTTGTATGCCACCTCCAACTTA
CGGATTTCCTGGAGGACCGGCACCAGCTGGGGCACCTTGGGGCGTGGGCA
TTCCGCCTTGGCAGCAACAGCAGCACATGCAAGACAAGCCAGCCAAGTCG
CTAATCATTAAGCCGGGTGTTATCGATCCGGCGGTTATAGCGCGAGCAGC
AGAGTGGTCAGAGCATCGTGCTCCCGATGGA

BO09943.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG33097-PA 2292 CG33097-RA 1..915 17..931 4575 100 Plus
CG33097-PB 2010 CG33097-RB 1..915 17..931 4575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG42724-RK 3589 CG42724-RK 104..1019 16..931 4580 100 Plus
CG42724-RI 4036 CG42724-RI 104..1019 16..931 4580 100 Plus
CG42724-RG 2805 CG42724-RG 104..1019 16..931 4580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6367105..6367833 931..203 3645 100 Minus
3R 32079331 3R 6367897..6368086 205..16 950 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:03:37 has no hits.

BO09943.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:42 Download gff for BO09943.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33097-PA 1..914 17..930 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:46 Download gff for BO09943.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33097-PB 1..914 17..930 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:40:10 Download gff for BO09943.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42724-RG 100..1018 11..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:46:30 Download gff for BO09943.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42724-RG 100..1018 11..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:46:30 Download gff for BO09943.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6367106..6367831 205..930 100 <- Minus
3R 6367898..6368090 11..204 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:40:10 Download gff for BO09943.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2192828..2193553 205..930 100 <- Minus
arm_3R 2193620..2193812 11..204 98   Minus

BO09943.complete Sequence

2323 bp assembled on 2006-10-10

GenBank Submission: FJ631620

> BO09943.complete
GAAGTTATCAGTCGACATGGATGCGAGCTTAGAGGAGAGCATGGATAGCG
ATGGCGCCAGTTCGCCGATTACCAAGACGGAGGCAACGGAATCTCCGCCA
GAAGCGGGTCTCAATGGAAACGGCAGTGGTAGTGGTAGTACCAGCCAGGA
GACCCCAAATTATGGCGTTGCTATACTCAAGGAAAAACCCAGCGAGGCCC
ATAGGAGCAAGCCCTTCAATGCGTTTAGTGGTCGTCCCATCGGGGAGCAC
ACCGCCCAGCAGCAGGCGCTGCAGCAACAACAACTGCAGCAACAACAACA
GCCACAGCAGCCGCAGCAACAAGCTCCTTCCGGAGCAAATGGAGTCACAG
GACCCCCGGAAATCTGGGTGGAAACCAAGGCGGAGGACGGTCGCTCATAT
TATTACCATGCGGTAACTAGGGAAACCACTTGGTCTCGACCCGATGGCCC
CGCTGTCAAGATAATGACCCAGGCAGAGGTGGAGGAGATGGCCAAGCGAC
CTGCCCAGGCCGCGAAAACGGAAGCCAAGGCAGGCGAGACGTCGGTCGAG
ATTCCGCCAGTGTCGTCACATCTTACCTCACAACCTCCGCCGCACCTGAT
GAGCCAGCCACCACCCAATGCGGCAGCACCGCTGCTTTCCCAGCCACCAC
CCAATGTACGGCAACAGCCACCACCAATGTTCCAGCCACCTGGAATGCAG
GCGCCTCCTGGGTTCGGACAGCCGCCGTTTTGTATGCCACCTCCAACTTA
CGGATTTCCTGGAGGACCGGCACCAGCTGGGGCACCTTGGGGCGTGGGCA
TTCCGCCTTGGCAGCAACAGCAGCACATGCAAGACAAGCCAGCCAAGTCG
CTAATCATTAAGCCGGGTGTTATCGATCCGGCGGTTATAGCGCGAGCAGC
AGAGTGGTCAGAGCATCGTGCTCCCGATGGAAGACCGTACTATTTCCACG
CCGGTCGAGGAGAGAGTGTCTGGGAGAAACCGCAGGCGCTGAGGGACATG
GAGGCCGCTCGCATGGCTGCCCACTCGGGCGTTGCGCCCGCTGTGGCAAC
AGCTCCGTCGGGACTACCACCACACTTGCTACCCAACCCTATGATGCATA
TGCCACCAGGATCAGGGCCGCCGGGATTTGATCCGCATGCTGCTTTTGCG
GCTGCTGCTGCAGCAATGAAAGCCAATTCGGAAAACACTAAGGCTGCACA
GGCAGCTGCTTTGGAGAAAGAGGCTAAAAAGGCGGCGGAGGAGAAGCGAA
AAAAGGAGGAGGAGCAGAAGAAGGCTGCGGCATCAGCCAAGCAAACGGAC
AAGAGTCGACCTGTGACAAGTACGCCCATCGCTGGAACGCCATGGTGTGT
CGTATGGACTGGAGATTCCCGCGTCTTCTTTTACAATCCGTCAACTAGGA
CTTCGGTTTGGGATCGCCCCGAGGACTTGTTGAATCGTGAGGACGTTGAC
AAAGCGGTAAACGAACGTCCGGAGCAACTGAAGACTCCGCAAGAGAAGTC
GGCTGAAGCCGAACAGAAGTCCGGCGAGGAAGCAAATCAAGAGCAGGCTA
AATCGCAAGTTCAAGCCCAGCAACTGGATCAGGTGCAGAGGGTGGATGCG
GATGATGATGACGACGACGAGGTTATCAAGATACGCACAGAGTCTGAGTC
TAGTGTGGAAGAGGTGCCAACCAAACGAGTTCGAATGATTTCCAAGTCGA
AGCGGGCAGAGGATGCCGCCCTAGAGGCTGAGCAGCGGGCGGCCAAGGAG
CGGGCCTTAGTACCACTAGAAATGCGCGTCACCCAATTCAAGGAAATGCT
TCGAGAGAAGGACGTATCGGCTTTCAGCACTTGGGAGAAGGAGCTTCACA
AGATCGTGTTCGACCCGCGGTATCTTCTGCTGACTTCGAAGGAACGCAAA
CAGGTATTTGAAAAGTATGTGAAGGATCGGGCCGAGGAGGAGCGTAAGGA
GAAGCGGAACAAGATGCGCCAGAAGCGGGAGGACTTCCGCAGCCTAATGG
AAGAAGCCAGGCTGCACGGAAAATCCTCATTCTCGGAGTTTAGCCAGAGG
AACGCCAAGGATGAACGGTATCGGGCCATCGAGAAGGTTCGCGAACGAGA
GAGTCTCTTCAACGAGTACATCGTGGAGGTGCGGCGCCGCGAAAAGGAGG
ACAAGCTGTTGAAGAAAGAGCAGCCACTAGCTAGCAGGTTACAGCACAAA
TGCACCACCCAAAACACCAAAATACACAAGAGCAACAGCATCGAGAACCA
CCTGTACAACACTCTCGACGGTCTATTCCGCCCGCCGTCTGCCATCGCCG
TCCACGCAAGCTTTCTAGACCAT

BO09943.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG42724-RI 2292 CG42724-PI 1..2289 17..2305 11445 100 Plus
CG42724-RE 2292 CG42724-PE 1..2289 17..2305 11445 100 Plus
CG42724-RL 2292 CG42724-PL 1..2289 17..2305 11445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG42724-RI 4036 CG42724-RI 104..2393 16..2305 11450 100 Plus
CG42724-RE 2500 CG42724-RE 104..2393 16..2305 11450 100 Plus
CG42724-RL 4153 CG42724-RL 104..2393 16..2305 11450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6366348..6367833 1688..203 7430 100 Minus
3R 32079331 3R 6365954..6366287 2022..1689 1670 100 Minus
3R 32079331 3R 6367897..6368086 205..16 950 100 Minus
3R 32079331 3R 6365004..6365154 2173..2023 755 100 Minus
3R 32079331 3R 6364594..6364727 2305..2172 670 100 Minus
Blast to na_te.dros performed 2014-11-27 15:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2383 1164..1129 117 80.6 Minus

BO09943.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:46 Download gff for BO09943.complete
Subject Subject Range Query Range Percent Splice Strand
CG33097-RA 1..2292 17..2308 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:01 Download gff for BO09943.complete
Subject Subject Range Query Range Percent Splice Strand
CG33097-RA 199..2498 11..2312 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:29 Download gff for BO09943.complete
Subject Subject Range Query Range Percent Splice Strand
CG42724-RE 105..2393 17..2307 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:47 Download gff for BO09943.complete
Subject Subject Range Query Range Percent Splice Strand
CG33097-RA 199..2498 11..2312 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:59 Download gff for BO09943.complete
Subject Subject Range Query Range Percent Splice Strand
CG42724-RL 105..2393 17..2307 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:59 Download gff for BO09943.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6364591..6364725 2174..2307 98 <- Minus
3R 6365004..6365154 2023..2173 100 <- Minus
3R 6365954..6366287 1689..2022 100 <- Minus
3R 6366348..6367831 205..1688 100 <- Minus
3R 6367898..6368085 17..204 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:29 Download gff for BO09943.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2193620..2193807 17..204 100   Minus
arm_3R 2190313..2190447 2174..2307 98 <- Minus
arm_3R 2190726..2190876 2023..2173 100 <- Minus
arm_3R 2191676..2192009 1689..2022 100 <- Minus
arm_3R 2192070..2193553 205..1688 100 <- Minus

BO09943.pep Sequence

Translation from 16 to 2323

> BO09943.pep
MDASLEESMDSDGASSPITKTEATESPPEAGLNGNGSGSGSTSQETPNYG
VAILKEKPSEAHRSKPFNAFSGRPIGEHTAQQQALQQQQLQQQQQPQQPQ
QQAPSGANGVTGPPEIWVETKAEDGRSYYYHAVTRETTWSRPDGPAVKIM
TQAEVEEMAKRPAQAAKTEAKAGETSVEIPPVSSHLTSQPPPHLMSQPPP
NAAAPLLSQPPPNVRQQPPPMFQPPGMQAPPGFGQPPFCMPPPTYGFPGG
PAPAGAPWGVGIPPWQQQQHMQDKPAKSLIIKPGVIDPAVIARAAEWSEH
RAPDGRPYYFHAGRGESVWEKPQALRDMEAARMAAHSGVAPAVATAPSGL
PPHLLPNPMMHMPPGSGPPGFDPHAAFAAAAAAMKANSENTKAAQAAALE
KEAKKAAEEKRKKEEEQKKAAASAKQTDKSRPVTSTPIAGTPWCVVWTGD
SRVFFYNPSTRTSVWDRPEDLLNREDVDKAVNERPEQLKTPQEKSAEAEQ
KSGEEANQEQAKSQVQAQQLDQVQRVDADDDDDDEVIKIRTESESSVEEV
PTKRVRMISKSKRAEDAALEAEQRAAKERALVPLEMRVTQFKEMLREKDV
SAFSTWEKELHKIVFDPRYLLLTSKERKQVFEKYVKDRAEEERKEKRNKM
RQKREDFRSLMEEARLHGKSSFSEFSQRNAKDERYRAIEKVRERESLFNE
YIVEVRRREKEDKLLKKEQPLASRLQHKCTTQNTKIHKSNSIENHLYNTL
DGLFRPPSAIAVHASFLDH

BO09943.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG42724-PI 763 CG42724-PI 1..763 1..763 3987 100 Plus
CG42724-PE 763 CG42724-PE 1..763 1..763 3987 100 Plus
CG42724-PL 763 CG42724-PL 1..763 1..763 3987 100 Plus
CG42724-PM 761 CG42724-PM 1..742 1..729 3754 97.6 Plus
CG42724-PK 1123 CG42724-PK 1..719 1..719 3752 100 Plus