Clone Sequence Records
BO09949.3prime Sequence
833 bp (800 high quality bases) assembled on 2006-04-19
> BO09949.3prime
ATGGTCTAGAAAGCTTGCGACCAGCTCCTCAATTGTCTGCGCTATCCAGT
CGTCATAGGCCGAAACTTTTGTGTAAATTCCAGGAAACATGGCGTTTGCG
CATCCAAATCCCCAGGACACAATGCCGTAGAGCTTTAGACGGCCATCTAT
AGATGTGACAAGTGGACCGCCCGAATCTCCCTGGCAGCTATCTCTTCCTC
CCGCCTGAGTTCCCGCGCAGAACATGGTGTTGGTCACGGTGCCAGCTCCG
AAATAGTTTCTGGCACACTGGTTCTGATCTCTCAGATGGACAACGGTGTA
GCGAAGACGCTTTTCCGGCTGCATTTGTGAGATCGACGTGCTGCCCCAGC
CGCTTACAAAAAGCTGTGCGGTCGGCATAATGATGTCCTTACTGGTGGCC
AAGCTTATGGGTCGTATATCCTGACTATAGACAAGGGGTTGCTGCAGCTG
AACAATGGCAATGTCATTGTTCATCCTCGTGGGGTCATGGAACTCAGGAT
GCGGAATGATCTTTTTGACGCGAATATAGCTGCCGCCCTTCGTCCAATCG
CTAGATCCGGCTCGAATCACGTAATATTGCGGTTTACTGTACTCCAGCAC
ACAGTGAGCAGCAGTCAAGATGATGTTGGGCGAAATGATGGTTCCACCGC
ATGCATGCCGGGTGCCCAACTGCAGGGATACTTGGTGCGGAAAGAAGGTG
ATGTGCGTCTCCCAGCCGCCGACAATGCGGCCATCCTGTTCGACATCCGT
GGAGTTCTGGGCAGCCGACGTACAGATTAGCCAGAGAGCTACTGCCAGTC
TGAAATCCAAGCTCGTCATGTCGACTGATAACT
BO09949.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13430-PA | 804 | CG13430-RA | 1..801 | 819..19 | 4005 | 100 | Minus |
CG13430-PB | 804 | CG13430-RB | 1..801 | 819..19 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18065-RA | 1631 | CG18065-RA | 658..1458 | 819..19 | 4005 | 100 | Minus |
CG13430-RB | 1009 | CG13430-RB | 36..836 | 819..19 | 4005 | 100 | Minus |
CG13430-RA | 1631 | CG13430-RA | 658..1458 | 819..19 | 4005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20550507..20551307 | 19..819 | 4005 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:59:44 has no hits.
BO09949.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:49 Download gff for
BO09949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13430-PA | 1..804 | 18..819 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:56 Download gff for
BO09949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13430-PB | 1..804 | 18..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:31:38 Download gff for
BO09949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18065-RA | 651..1462 | 13..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:56:24 Download gff for
BO09949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13430-RA | 651..1462 | 13..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:56:24 Download gff for
BO09949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20550503..20551302 | 13..814 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:31:38 Download gff for
BO09949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16438008..16438807 | 13..814 | 99 | -> | Plus |
BO09949.5prime Sequence
833 bp (832 high quality bases) assembled on 2006-04-19
> BO09949.5prime
GAAGTTATCAGTCGACATGACGAGCTTGGATTTCAGACTGGCAGTAGCTC
TCTGGCTAATCTGTACGTCGGCTGCCCAGAACTCCACGGATGTCGAACAG
GATGGCCGCATTGTCGGCGGCTGGGAGACGCACATCACCTTCTTTCCGCA
CCAAGTATCCCTGCAGTTGGGCACCCGGCATGCATGCGGTGGAACCATCA
TTTCGCCCAACATCATCTTGACTGCTGCTCACTGTGTGCTGGAGTACAGT
AAACCGCAATATTACGTGATTCGAGCCGGATCTAGCGATTGGACGAAGGG
CGGCAGCTATATTCGCGTCAAAAAGATCATTCCGCATCCTGAGTTCCATG
ACCCCACGAGGATGAACAATGACATTGCCATTGTTCAGCTGCAGCAACCC
CTTGTCTATAGTCAGGATATACGACCCATAAGCTTGGCCACCAGTAAGGA
CATCATTATGCCGACCGCACAGCTTTTTGTAAGCGGCTGGGGCAGCACGT
CGATCTCACAAATGCAGCCGGAAAAGCGTCTTCGCTACACCGTTGTCCAT
CTGAGAGATCAGAACCAGTGTGCCAGAAACTATTTCGGAGCTGGCACCGT
GACCAACACCATGTTCTGCGCGGGAACTCAGGCGGGAGGAAGAGATAGCT
GCCAGGGAGATTCGGGCGGTCCACTTGTCACATCTATAGATGGCCGTCTA
AAGCTCTACGGCATTGTGTCCTGGGGATTTGGATGCGCAAACGCCATGTT
TCCTGGAATTTACACAAAAGTTTCGGCCTATGACGACTGGATAGCGCAGA
CAATTGAGGAGCTGGTCGCAAGCTTTCTAGACC
BO09949.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13430-PA | 804 | CG13430-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
CG13430-PB | 804 | CG13430-RB | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:38:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18065-RA | 1631 | CG18065-RA | 658..1458 | 17..817 | 4005 | 100 | Plus |
CG13430-RB | 1009 | CG13430-RB | 36..836 | 17..817 | 4005 | 100 | Plus |
CG13430-RA | 1631 | CG13430-RA | 658..1458 | 17..817 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20550507..20551307 | 817..17 | 4005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:38:53 has no hits.
BO09949.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:50 Download gff for
BO09949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13430-PA | 1..804 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:57 Download gff for
BO09949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13430-PB | 1..804 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:48 Download gff for
BO09949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18065-RA | 651..1462 | 10..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:18:05 Download gff for
BO09949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13430-RA | 651..1462 | 10..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:18:05 Download gff for
BO09949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20550503..20551302 | 22..823 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:48 Download gff for
BO09949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16438008..16438807 | 22..823 | 99 | -> | Minus |
BO09949.complete Sequence
835 bp (835 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631621
> BO09949.complete
GAAGTTATCAGTCGACATGACGAGCTTGGATTTCAGACTGGCAGTAGCTC
TCTGGCTAATCTGTACGTCGGCTGCCCAGAACTCCACGGATGTCGAACAG
GATGGCCGCATTGTCGGCGGCTGGGAGACGCACATCACCTTCTTTCCGCA
CCAAGTATCCCTGCAGTTGGGCACCCGGCATGCATGCGGTGGAACCATCA
TTTCGCCCAACATCATCTTGACTGCTGCTCACTGTGTGCTGGAGTACAGT
AAACCGCAATATTACGTGATTCGAGCCGGATCTAGCGATTGGACGAAGGG
CGGCAGCTATATTCGCGTCAAAAAGATCATTCCGCATCCTGAGTTCCATG
ACCCCACGAGGATGAACAATGACATTGCCATTGTTCAGCTGCAGCAACCC
CTTGTCTATAGTCAGGATATACGACCCATAAGCTTGGCCACCAGTAAGGA
CATCATTATGCCGACCGCACAGCTTTTTGTAAGCGGCTGGGGCAGCACGT
CGATCTCACAAATGCAGCCGGAAAAGCGTCTTCGCTACACCGTTGTCCAT
CTGAGAGATCAGAACCAGTGTGCCAGAAACTATTTCGGAGCTGGCACCGT
GACCAACACCATGTTCTGCGCGGGAACTCAGGCGGGAGGAAGAGATAGCT
GCCAGGGAGATTCGGGCGGTCCACTTGTCACATCTATAGATGGCCGTCTA
AAGCTCTACGGCATTGTGTCCTGGGGATTTGGATGCGCAAACGCCATGTT
TCCTGGAATTTACACAAAAGTTTCGGCCTATGACGACTGGATAGCGCAGA
CAATTGAGGAGCTGGTCGCAAGCTTTCTAGACCAT
BO09949.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13430-RB | 804 | CG13430-PB | 1..801 | 17..817 | 4005 | 100 | Plus |
CG13430-RA | 804 | CG13430-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18065-RA | 1631 | CG18065-RA | 658..1458 | 17..817 | 4005 | 100 | Plus |
CG13430-RB | 1009 | CG13430-RB | 36..836 | 17..817 | 4005 | 100 | Plus |
CG13430-RA | 1631 | CG13430-RA | 658..1458 | 17..817 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20550507..20551307 | 817..17 | 4005 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:05:26 has no hits.
BO09949.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:39 Download gff for
BO09949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13430-RB | 1..804 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:06 Download gff for
BO09949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18065-RA | 647..1458 | 10..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:04 Download gff for
BO09949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18065-RA | 658..1458 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:39 Download gff for
BO09949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18065-RA | 647..1458 | 10..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:47 Download gff for
BO09949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13430-RA | 658..1458 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:47 Download gff for
BO09949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20550503..20551307 | 17..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:04 Download gff for
BO09949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16438008..16438812 | 17..819 | 99 | | Minus |
BO09949.pep Sequence
Translation from 16 to 835
> BO09949.pep
MTSLDFRLAVALWLICTSAAQNSTDVEQDGRIVGGWETHITFFPHQVSLQ
LGTRHACGGTIISPNIILTAAHCVLEYSKPQYYVIRAGSSDWTKGGSYIR
VKKIIPHPEFHDPTRMNNDIAIVQLQQPLVYSQDIRPISLATSKDIIMPT
AQLFVSGWGSTSISQMQPEKRLRYTVVHLRDQNQCARNYFGAGTVTNTMF
CAGTQAGGRDSCQGDSGGPLVTSIDGRLKLYGIVSWGFGCANAMFPGIYT
KVSAYDDWIAQTIEELVASFLDH
BO09949.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13430-PB | 267 | CG13430-PB | 1..267 | 1..267 | 1421 | 100 | Plus |
CG13430-PA | 267 | CG13430-PA | 1..267 | 1..267 | 1421 | 100 | Plus |
CG11192-PB | 279 | CG11192-PB | 9..264 | 13..264 | 496 | 41.3 | Plus |
alphaTry-PA | 256 | CG18444-PA | 28..256 | 29..266 | 463 | 43.1 | Plus |
CG31954-PA | 277 | CG31954-PA | 48..273 | 29..261 | 460 | 42.5 | Plus |