Clone BO09949 Report

Search the DGRC for BO09949

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:99
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG13430-RA
Protein status:BO09949.pep: validated full length
Sequenced Size:835

Clone Sequence Records

BO09949.3prime Sequence

833 bp (800 high quality bases) assembled on 2006-04-19

> BO09949.3prime
ATGGTCTAGAAAGCTTGCGACCAGCTCCTCAATTGTCTGCGCTATCCAGT
CGTCATAGGCCGAAACTTTTGTGTAAATTCCAGGAAACATGGCGTTTGCG
CATCCAAATCCCCAGGACACAATGCCGTAGAGCTTTAGACGGCCATCTAT
AGATGTGACAAGTGGACCGCCCGAATCTCCCTGGCAGCTATCTCTTCCTC
CCGCCTGAGTTCCCGCGCAGAACATGGTGTTGGTCACGGTGCCAGCTCCG
AAATAGTTTCTGGCACACTGGTTCTGATCTCTCAGATGGACAACGGTGTA
GCGAAGACGCTTTTCCGGCTGCATTTGTGAGATCGACGTGCTGCCCCAGC
CGCTTACAAAAAGCTGTGCGGTCGGCATAATGATGTCCTTACTGGTGGCC
AAGCTTATGGGTCGTATATCCTGACTATAGACAAGGGGTTGCTGCAGCTG
AACAATGGCAATGTCATTGTTCATCCTCGTGGGGTCATGGAACTCAGGAT
GCGGAATGATCTTTTTGACGCGAATATAGCTGCCGCCCTTCGTCCAATCG
CTAGATCCGGCTCGAATCACGTAATATTGCGGTTTACTGTACTCCAGCAC
ACAGTGAGCAGCAGTCAAGATGATGTTGGGCGAAATGATGGTTCCACCGC
ATGCATGCCGGGTGCCCAACTGCAGGGATACTTGGTGCGGAAAGAAGGTG
ATGTGCGTCTCCCAGCCGCCGACAATGCGGCCATCCTGTTCGACATCCGT
GGAGTTCTGGGCAGCCGACGTACAGATTAGCCAGAGAGCTACTGCCAGTC
TGAAATCCAAGCTCGTCATGTCGACTGATAACT

BO09949.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13430-PA 804 CG13430-RA 1..801 819..19 4005 100 Minus
CG13430-PB 804 CG13430-RB 1..801 819..19 4005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG18065-RA 1631 CG18065-RA 658..1458 819..19 4005 100 Minus
CG13430-RB 1009 CG13430-RB 36..836 819..19 4005 100 Minus
CG13430-RA 1631 CG13430-RA 658..1458 819..19 4005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20550507..20551307 19..819 4005 100 Plus
Blast to na_te.dros performed on 2015-01-30 16:59:44 has no hits.

BO09949.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:49 Download gff for BO09949.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13430-PA 1..804 18..819 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:56 Download gff for BO09949.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13430-PB 1..804 18..819 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:31:38 Download gff for BO09949.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18065-RA 651..1462 13..826 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:56:24 Download gff for BO09949.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13430-RA 651..1462 13..826 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:56:24 Download gff for BO09949.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20550503..20551302 13..814 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:31:38 Download gff for BO09949.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16438008..16438807 13..814 99 -> Plus

BO09949.5prime Sequence

833 bp (832 high quality bases) assembled on 2006-04-19

> BO09949.5prime
GAAGTTATCAGTCGACATGACGAGCTTGGATTTCAGACTGGCAGTAGCTC
TCTGGCTAATCTGTACGTCGGCTGCCCAGAACTCCACGGATGTCGAACAG
GATGGCCGCATTGTCGGCGGCTGGGAGACGCACATCACCTTCTTTCCGCA
CCAAGTATCCCTGCAGTTGGGCACCCGGCATGCATGCGGTGGAACCATCA
TTTCGCCCAACATCATCTTGACTGCTGCTCACTGTGTGCTGGAGTACAGT
AAACCGCAATATTACGTGATTCGAGCCGGATCTAGCGATTGGACGAAGGG
CGGCAGCTATATTCGCGTCAAAAAGATCATTCCGCATCCTGAGTTCCATG
ACCCCACGAGGATGAACAATGACATTGCCATTGTTCAGCTGCAGCAACCC
CTTGTCTATAGTCAGGATATACGACCCATAAGCTTGGCCACCAGTAAGGA
CATCATTATGCCGACCGCACAGCTTTTTGTAAGCGGCTGGGGCAGCACGT
CGATCTCACAAATGCAGCCGGAAAAGCGTCTTCGCTACACCGTTGTCCAT
CTGAGAGATCAGAACCAGTGTGCCAGAAACTATTTCGGAGCTGGCACCGT
GACCAACACCATGTTCTGCGCGGGAACTCAGGCGGGAGGAAGAGATAGCT
GCCAGGGAGATTCGGGCGGTCCACTTGTCACATCTATAGATGGCCGTCTA
AAGCTCTACGGCATTGTGTCCTGGGGATTTGGATGCGCAAACGCCATGTT
TCCTGGAATTTACACAAAAGTTTCGGCCTATGACGACTGGATAGCGCAGA
CAATTGAGGAGCTGGTCGCAAGCTTTCTAGACC

BO09949.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13430-PA 804 CG13430-RA 1..801 17..817 4005 100 Plus
CG13430-PB 804 CG13430-RB 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18065-RA 1631 CG18065-RA 658..1458 17..817 4005 100 Plus
CG13430-RB 1009 CG13430-RB 36..836 17..817 4005 100 Plus
CG13430-RA 1631 CG13430-RA 658..1458 17..817 4005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20550507..20551307 817..17 4005 100 Minus
Blast to na_te.dros performed on 2015-02-10 03:38:53 has no hits.

BO09949.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:50 Download gff for BO09949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13430-PA 1..804 17..818 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:34:57 Download gff for BO09949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13430-PB 1..804 17..818 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:48 Download gff for BO09949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18065-RA 651..1462 10..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:18:05 Download gff for BO09949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13430-RA 651..1462 10..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:18:05 Download gff for BO09949.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20550503..20551302 22..823 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:48 Download gff for BO09949.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16438008..16438807 22..823 99 -> Minus

BO09949.complete Sequence

835 bp (835 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631621

> BO09949.complete
GAAGTTATCAGTCGACATGACGAGCTTGGATTTCAGACTGGCAGTAGCTC
TCTGGCTAATCTGTACGTCGGCTGCCCAGAACTCCACGGATGTCGAACAG
GATGGCCGCATTGTCGGCGGCTGGGAGACGCACATCACCTTCTTTCCGCA
CCAAGTATCCCTGCAGTTGGGCACCCGGCATGCATGCGGTGGAACCATCA
TTTCGCCCAACATCATCTTGACTGCTGCTCACTGTGTGCTGGAGTACAGT
AAACCGCAATATTACGTGATTCGAGCCGGATCTAGCGATTGGACGAAGGG
CGGCAGCTATATTCGCGTCAAAAAGATCATTCCGCATCCTGAGTTCCATG
ACCCCACGAGGATGAACAATGACATTGCCATTGTTCAGCTGCAGCAACCC
CTTGTCTATAGTCAGGATATACGACCCATAAGCTTGGCCACCAGTAAGGA
CATCATTATGCCGACCGCACAGCTTTTTGTAAGCGGCTGGGGCAGCACGT
CGATCTCACAAATGCAGCCGGAAAAGCGTCTTCGCTACACCGTTGTCCAT
CTGAGAGATCAGAACCAGTGTGCCAGAAACTATTTCGGAGCTGGCACCGT
GACCAACACCATGTTCTGCGCGGGAACTCAGGCGGGAGGAAGAGATAGCT
GCCAGGGAGATTCGGGCGGTCCACTTGTCACATCTATAGATGGCCGTCTA
AAGCTCTACGGCATTGTGTCCTGGGGATTTGGATGCGCAAACGCCATGTT
TCCTGGAATTTACACAAAAGTTTCGGCCTATGACGACTGGATAGCGCAGA
CAATTGAGGAGCTGGTCGCAAGCTTTCTAGACCAT

BO09949.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13430-RB 804 CG13430-PB 1..801 17..817 4005 100 Plus
CG13430-RA 804 CG13430-PA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG18065-RA 1631 CG18065-RA 658..1458 17..817 4005 100 Plus
CG13430-RB 1009 CG13430-RB 36..836 17..817 4005 100 Plus
CG13430-RA 1631 CG13430-RA 658..1458 17..817 4005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20550507..20551307 817..17 4005 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:05:26 has no hits.

BO09949.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:39 Download gff for BO09949.complete
Subject Subject Range Query Range Percent Splice Strand
CG13430-RB 1..804 17..818 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:06 Download gff for BO09949.complete
Subject Subject Range Query Range Percent Splice Strand
CG18065-RA 647..1458 10..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:04 Download gff for BO09949.complete
Subject Subject Range Query Range Percent Splice Strand
CG18065-RA 658..1458 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:39 Download gff for BO09949.complete
Subject Subject Range Query Range Percent Splice Strand
CG18065-RA 647..1458 10..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:47 Download gff for BO09949.complete
Subject Subject Range Query Range Percent Splice Strand
CG13430-RA 658..1458 17..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:47 Download gff for BO09949.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20550503..20551307 17..819 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:04 Download gff for BO09949.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16438008..16438812 17..819 99   Minus

BO09949.pep Sequence

Translation from 16 to 835

> BO09949.pep
MTSLDFRLAVALWLICTSAAQNSTDVEQDGRIVGGWETHITFFPHQVSLQ
LGTRHACGGTIISPNIILTAAHCVLEYSKPQYYVIRAGSSDWTKGGSYIR
VKKIIPHPEFHDPTRMNNDIAIVQLQQPLVYSQDIRPISLATSKDIIMPT
AQLFVSGWGSTSISQMQPEKRLRYTVVHLRDQNQCARNYFGAGTVTNTMF
CAGTQAGGRDSCQGDSGGPLVTSIDGRLKLYGIVSWGFGCANAMFPGIYT
KVSAYDDWIAQTIEELVASFLDH

BO09949.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13430-PB 267 CG13430-PB 1..267 1..267 1421 100 Plus
CG13430-PA 267 CG13430-PA 1..267 1..267 1421 100 Plus
CG11192-PB 279 CG11192-PB 9..264 13..264 496 41.3 Plus
alphaTry-PA 256 CG18444-PA 28..256 29..266 463 43.1 Plus
CG31954-PA 277 CG31954-PA 48..273 29..261 460 42.5 Plus