Clone Sequence Records
BO09953.3prime Sequence
912 bp (846 high quality bases) assembled on 2006-04-19
> BO09953.3prime
ATGGTCTAGAAAGCTTGCCTCAGCGAAAGCCATGCGACGCTTTCCAGGCA
AATCCTCCGGCCACCATTCTGGACGTTCAACATAACAGCGCTCGCCATCG
ATCATCAACTCAGGACGGCCGTTGAGAACCTTCTCGATGCGCAGCAGTGC
AATACCATGCTTGTGCGCAAAGCCAAAGACGCGTCCAAGTTTCGCTCCAG
CCAAAGAAGTTACGTCCTGGCTGGAACCCACATCAATTGGGGCCGTCAAC
CGGATGGGCATGTATCGCTTGCGGATCACGCCCGAATGATGGACGCGGGC
AGTTAGCTCCTGGCCCACATAGCAGCCCTTGTGGAAGCTCACGCCATGCA
GGTAATCCGCATTCGCTTCGAGGGGAAAACATTTGCCCGGTGTCAGTTCC
GAGCAGCCCTCGCCCACTCCTTGCTTGTAGCGCAGCAGTTGATAACTATT
GTCGGAGGAGGCTGCTGTGGCGGTACCGAAGTCAGCAAAACATTTGGACA
GCTTGGACCAGTCCATGTCGGTGGGGGCCAGGATGCGAGTGCCAAGGACA
TGCAGCCTCGGGTCGGGAGACACAAATAAGTCTGGATGTGGATTGGGTAC
AGCCTCCGAAGCGTCCTTGAGGTTAAACATAACCCAAGGGGTATACTCGT
CGTCTACACTGTCGACCTCAATGCGCCTGCGAACGCGGTAGGTGCGAAGA
TGGCGTCGGAAGTCCGAGGAAGCCTCCCGATCGCACTCAACAAGGATGGT
TTCCGGGTTGTTGGTGCGGTACAAGATGGTGTCGTACAGCAGCCTGCCCG
CCTTGTTGAGAAAATGGGCGTACATTGAGGCAGGACCCCCCGGCGACTGA
ATCCGGGCCACATCGTTGGTCGCAAGACCCTGCANGAATGGCACCACCTC
GGCCCCGTGGAC
BO09953.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8043-PA | 1047 | CG8043-RA | 151..1044 | 912..19 | 4451 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8043-RA | 1254 | CG8043-RA | 285..1178 | 912..19 | 4459 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8677264..8678157 | 912..19 | 4459 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:06:57 has no hits.
BO09953.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:57 Download gff for
BO09953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-PA | 151..1047 | 16..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:07 Download gff for
BO09953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-PA | 151..1047 | 16..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:42 Download gff for
BO09953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 285..1184 | 11..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:21:07 Download gff for
BO09953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 285..1184 | 11..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:21:07 Download gff for
BO09953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8677264..8678163 | 11..912 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:42 Download gff for
BO09953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4502986..4503885 | 11..912 | 99 | | Minus |
BO09953.5prime Sequence
942 bp (831 high quality bases) assembled on 2006-04-19
> BO09953.5prime
GAAGTTATCAGTCGACATGAATAGATGTTCGAATCCGTGGTTTCTGCGCG
CCGTGCGCCATCACATACGTAATCTCCACGAGATGAGGATTCCATACGCC
CGTCCGGTGGGCCCAAATCAGCGCAATTTCACGTTGGAGCCGCTGGGAAA
TCGAGAACTCATCCGTGTCCACGGGGCCGAGGTGGTGCCATTCCTGCAGG
GTCTTGCGACCAACGATGTGGCCCGGATTCAGTCGCCGGGGGGTCCTGCC
TCAATGTACGCCCATTTTCTCAACAAGGCGGGCAGGCTGCTGTACGACAC
CATCTTGTACCGCACCAACAACCCGGAAACCATCCTTGTTGAGTGCGATC
GGGAGGCTTCCTCGGACTTCCGACGCCATCTTCGCACCTACCGCGTTCGC
AGGCGCATTGAGGTCGACAGTGTAGACGACGAGTATACCCCTTGGGTTAT
GTTTAACCTCAAGGACGCTTCGGAGGCTGTACCCAATCCACATCCAGACT
TATTTGTGTCTCCCGACCCGAGGCTGCATGTCCTTGGCACTCGCATCCTG
GCCCCCACCGACATGGACTGGTCCAAGCTGTCCAAATGTTTTGCTGACTT
CGGTACCGCCACAGCAGCCTCCTCCGACAATAGTTATCAACTGCTGCGCT
ACAAGCAAGGAGTGGGCGAGGGCTGCTCGGAACTGACACCGGGCAAATGT
TTTCCCCTCGAAGCGAATGCGGATTACCTGCATGGCGTGAGCTTCCACAA
GGGCTGCTATGTGGGCCAGGAGCTAACTGCCCGCGTCCATCATTCGGGCG
TGATCCGCAAGCGATACATGCCCATCCGGTTGACGGGCCCCATTGATGTG
GGTTCCAGCCAGGACGTAACTTCTTTGGCTGGAGCGAAACTTGGACGCGT
CTTTGGCTTTGCGCACAAGCATGGTATTGCACTGCTGCGCAT
BO09953.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8043-PA | 1047 | CG8043-RA | 1..926 | 17..942 | 4580 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8043-RA | 1254 | CG8043-RA | 134..1060 | 16..942 | 4605 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8677113..8678039 | 16..942 | 4605 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:40:04 has no hits.
BO09953.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:25:58 Download gff for
BO09953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:09 Download gff for
BO09953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:54:38 Download gff for
BO09953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 125..1060 | 9..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:31:01 Download gff for
BO09953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 125..1060 | 9..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:31:01 Download gff for
BO09953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8677113..8678039 | 16..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:54:38 Download gff for
BO09953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4502835..4503761 | 16..942 | 99 | | Plus |
BO09953.complete Sequence
1078 bp (1078 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631622
> BO09953.complete
GAAGTTATCAGTCGACATGAATAGATGTTCGAATCCGTGGTTTCTGCGCG
CCGTGCGCCATCACATACGTAATCTCCACGAGATGAGGATTCCATACGCC
CGTCCGGTGGGCCCAAATCAGCGCAATTTCACGTTGGAGCCGCTGGGAAA
TCGAGAACTCATCCGTGTCCACGGGGCCGAGGTGGTGCCATTCCTGCAGG
GTCTTGCGACCAACGATGTGGCCCGGATTCAGTCGCCGGGGGGTCCTGCC
TCAATGTACGCCCATTTTCTCAACAAGGCGGGCAGGCTGCTGTACGACAC
CATCTTGTACCGCACCAACAACCCGGAAACCATCCTTGTTGAGTGCGATC
GGGAGGCTTCCTCGGACTTCCGACGCCATCTTCGCACCTACCGCGTTCGC
AGGCGCATTGAGGTCGACAGTGTAGACGACGAGTATACCCCTTGGGTTAT
GTTTAACCTCAAGGACGCTTCGGAGGCTGTACCCAATCCACATCCAGACT
TATTTGTGTCTCCCGACCCGAGGCTGCATGTCCTTGGCACTCGCATCCTG
GCCCCCACCGACATGGACTGGTCCAAGCTGTCCAAATGTTTTGCTGACTT
CGGTACCGCCACAGCAGCCTCCTCCGACAATAGTTATCAACTGCTGCGCT
ACAAGCAAGGAGTGGGCGAGGGCTGCTCGGAACTGACACCGGGCAAATGT
TTTCCCCTCGAAGCGAATGCGGATTACCTGCATGGCGTGAGCTTCCACAA
GGGCTGCTATGTGGGCCAGGAGCTAACTGCCCGCGTCCATCATTCGGGCG
TGATCCGCAAGCGATACATGCCCATCCGGTTGACGGCCCCAATTGATGTG
GGTTCCAGCCAGGACGTAACTTCTTTGGCTGGAGCGAAACTTGGACGCGT
CTTTGGCTTTGCGCACAAGCATGGTATTGCACTGCTGCGCATCGAGAAGG
TTCTCAACGGCCGTCCTGAGTTGATGATCGATGGCGAGCGCTGTTATGTT
GAACGTCCAGAATGGTGGCCGGAGGATTTGCCTGGAAAGCGTCGCATGGC
TTTCGCTGAGGCAAGCTTTCTAGACCAT
BO09953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8043-RA | 1047 | CG8043-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8043-RA | 1254 | CG8043-RA | 134..1178 | 16..1060 | 5225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8677113..8678157 | 16..1060 | 5225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:52:53 has no hits.
BO09953.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:03 Download gff for
BO09953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 1..1047 | 17..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:25 Download gff for
BO09953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 123..1182 | 9..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:39 Download gff for
BO09953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 135..1178 | 17..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:03 Download gff for
BO09953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 123..1182 | 9..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:02 Download gff for
BO09953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 135..1178 | 17..1062 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:02 Download gff for
BO09953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8677114..8678157 | 17..1062 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:39 Download gff for
BO09953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4502836..4503879 | 17..1062 | 99 | | Plus |
BO09953.pep Sequence
Translation from 16 to 1078
> BO09953.pep
MNRCSNPWFLRAVRHHIRNLHEMRIPYARPVGPNQRNFTLEPLGNRELIR
VHGAEVVPFLQGLATNDVARIQSPGGPASMYAHFLNKAGRLLYDTILYRT
NNPETILVECDREASSDFRRHLRTYRVRRRIEVDSVDDEYTPWVMFNLKD
ASEAVPNPHPDLFVSPDPRLHVLGTRILAPTDMDWSKLSKCFADFGTATA
ASSDNSYQLLRYKQGVGEGCSELTPGKCFPLEANADYLHGVSFHKGCYVG
QELTARVHHSGVIRKRYMPIRLTAPIDVGSSQDVTSLAGAKLGRVFGFAH
KHGIALLRIEKVLNGRPELMIDGERCYVERPEWWPEDLPGKRRMAFAEAS
FLDH
BO09953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8043-PA | 348 | CG8043-PA | 1..348 | 1..348 | 1869 | 100 | Plus |
