Clone Sequence Records
BO09955.3prime Sequence
903 bp (841 high quality bases) assembled on 2006-04-19
> BO09955.3prime
ATGGTCTAGAAAGCTTGCCTGCTCCTGTTCCATCTCGTCGGCAGCGGCGC
TGACCTCCTTCCACGAGTACTCCATGTCCTCGGACTGGGTGAATCGCGAG
CAAATGGCCATGCGCAGGAAGTAGACATCCTTGATCTTGGCGGGAACCAA
GTGGATGTGGCCGCGTCCATTGATTCGCTTGAGAAGAGCTTCGTTCCGCT
CGTTGCTGCCCTTCAGCCGGAAGCAGACCAATCCCATATTGATCTCGGCG
GCCAGTTCAAATCTGGAGTCCGCCACGCAGAGATCCCCGAACTGCTTGGC
AAAGTTGCAGTGTCTGCGGATGTGGGCCTGGAGATTCTCGACACCGTACA
GCCGGAGGACGAACCAGAGCTTCAGTGCCCTGAATCGCCGTCCAAGTGGG
ATTTGCCAGTGACGATAGTCCGGAGCTGATCCCTGCATGTCGTGCTTCAG
GTAAAGAGGGTCCACATTGAACGCGTTGACCACCCAACTGGGATCCTTCA
GCCACATGGCCGAGCAGTCAAAGTTCACCAGCATCCATTTGTGTGGATTG
AAATTGAAAGAGTCTGCTGATTCGATGCCCTTCATCAGGTGGCGATACTC
GGGGCAAATGAAAGCGGATCCGGCATAGGCAGCGTCCACATGGATCCACA
AATTGTGCTTGTTTCCCACCGGTCCACACTCATCCAAGTAGTCGAAGGCG
CAGGAGTTGGTGGTGCCCAGGGTGACCACCGCGTAGAAGGGAATCAAACC
CTCGGCCACATCCTGTTCGATGGCCTTTTCCAGGGCAGCACCACGCATTC
TGTGATTCTCGGACTGCACGGAACGGAGCTTTACTCCGCCCAGAAGACCA
GCCCGCTCCACGGATGAGTGAGCCTGGTCCGAGCAGTAGCCCACCAACTT
GCC
BO09955.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10697-PB | 1428 | Ddc-RB | 541..1425 | 903..19 | 4425 | 100 | Minus |
| CG10697-PC | 1533 | Ddc-RC | 646..1530 | 903..19 | 4425 | 100 | Minus |
| CG10697-PA | 1509 | Ddc-RA | 622..1506 | 903..19 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddc-RD | 2797 | CG10697-RD | 1612..2496 | 903..19 | 4425 | 100 | Minus |
| Ddc-RC | 2085 | CG10697-RC | 900..1784 | 903..19 | 4425 | 100 | Minus |
| Ddc-RB | 1929 | CG10697-RB | 744..1628 | 903..19 | 4425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19116784..19117668 | 19..903 | 4425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:20:03 has no hits.
BO09955.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:01 Download gff for
BO09955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-PA | 622..1509 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:12 Download gff for
BO09955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10697-PA | 622..1509 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:10:44 Download gff for
BO09955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RB | 744..1633 | 14..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:45:51 Download gff for
BO09955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RB | 744..1633 | 14..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:45:51 Download gff for
BO09955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19116779..19117668 | 14..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:10:44 Download gff for
BO09955.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19116779..19117668 | 14..903 | 99 | | Plus |
BO09955.5prime Sequence
936 bp (758 high quality bases) assembled on 2006-04-19
> BO09955.5prime
GAAGTTATCAGTCGACATGTCTATTGGGTTTAGGTATAGAGCCAACAATT
ATGCACGTCTGATAACCAAATACTTTTGCATCCACATCAAGATCGACATG
GAGGCGCCGGAGTTCAAGGATTTTGCCAAGACAATGGTCGACTTTATAGC
CGAATATCTGGAGAATATACGCGAAAGGCGCGTTCTGCCGGAAGTGAAGC
CTGGCTACCTGAAGCCATTGATTCCGGATGCTGCGCCCGAGAAGCCGGAG
AAGTGGCAGGATGTGATGCAGGACATCGAGCGAGTCATCATGCCGGGCGT
GACACACTGGCACAGTCCCAAGTTTCATGCCTACTTCCCCACGGCCAACT
CGTATCCAGCGATCGTTGCGGACATGCTGAGTGGAGCGATTGCCTGCATC
GGATTCACGTGGATCGCCAGTCCCGCGTGCACGGAACTCGAGGTGGTCAT
GATGGATTGGCTGGGCAAGATGCTGGAGCTGCCGGCAGAGTTCCTGGCCT
GTTCGGGCGGCAAGGGTGGCGGTGTCATCCAGGGCACGGCCAGTGAGTCC
ACACTGGTGGCTCTGCTGGGAGCCAAGGCCAAGAAGTTGAAGGAGGTGAA
GGAGCTCCATCCGGAGTGGGATGAGCACACCATCTTGGGCAAGTTGGTGG
GCTACTGCTCGGACCAGGCTCACTCATCCGTGGAGCGGGCTGGTCTTCTG
GGCGGAGTAAAGCTCCGTTCCGTGCAGTCCGAGAATCACAGAATGCGTGG
TGCTGCCCTGGAAAAGGCCATCGAACAGGATGTGGCCGAGGGTTTGATTC
CCTTCTACGCGGTGGTCACCCTGGGCACCACCAACTCCTGCGCCTTCGAC
TACTTGGATGAGTGTGGACCGGTGGGAAACAAGCACAATTTGTGGATCCA
TGTGGACGCTGCCTATGGCGGATCCGCTTTCATTTG
BO09955.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10697-PA | 1509 | Ddc-RA | 1..920 | 17..936 | 4575 | 99.8 | Plus |
| CG10697-PC | 1533 | Ddc-RC | 99..944 | 91..936 | 4205 | 99.8 | Plus |
| CG10697-PB | 1428 | Ddc-RB | 1..839 | 98..936 | 4170 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddc-RD | 2797 | CG10697-RD | 991..1910 | 17..936 | 4585 | 99.9 | Plus |
| Ddc-RC | 2085 | CG10697-RC | 353..1198 | 91..936 | 4215 | 99.9 | Plus |
| Ddc-RB | 1929 | CG10697-RB | 197..1042 | 91..936 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19117370..19118130 | 936..176 | 3790 | 99.9 | Minus |
| 2L | 23513712 | 2L | 19119155..19119316 | 178..17 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:50:35 has no hits.
BO09955.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:02 Download gff for
BO09955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:14 Download gff for
BO09955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10697-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:54:54 Download gff for
BO09955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RD | 986..1910 | 12..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:11:08 Download gff for
BO09955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RD | 986..1910 | 12..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:11:08 Download gff for
BO09955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19117370..19118128 | 178..936 | 99 | <- | Minus |
| 2L | 19119156..19119321 | 12..177 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:54:54 Download gff for
BO09955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19119156..19119321 | 12..177 | 98 | | Minus |
| arm_2L | 19117370..19118128 | 178..936 | 99 | <- | Minus |
BO09955.complete Sequence
1540 bp (1540 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631623
> BO09955.complete
GAAGTTATCAGTCGACATGTCTATTGGGTTTAGGTATAGAGCCAACAATT
ATGCACGTCTGATAACCAAATACTTTTGCATCCACATCAAGATCGACATG
GAGGCGCCGGAGTTCAAGGATTTTGCCAAGACAATGGTCGACTTTATAGC
CGAATATCTGGAGAATATACGCGAAAGGCGCGTTCTGCCGGAAGTGAAGC
CTGGCTACCTGAAGCCATTGATTCCGGATGCTGCGCCCGAGAAGCCGGAG
AAGTGGCAGGATGTGATGCAGGACATCGAGCGAGTCATCATGCCGGGCGT
GACACACTGGCACAGTCCCAAGTTTCATGCCTACTTCCCCACGGCCAACT
CGTATCCAGCGATCGTTGCGGACATGCTGAGTGGAGCGATTGCCTGCATC
GGATTCACGTGGATCGCCAGTCCCGCGTGCACGGAACTCGAGGTGGTCAT
GATGGATTGGCTGGGCAAGATGCTGGAGCTGCCGGCAGAGTTCCTGGCCT
GTTCGGGCGGCAAGGGTGGCGGTGTCATCCAGGGCACGGCCAGTGAGTCC
ACACTGGTGGCTCTGCTGGGAGCCAAGGCCAAGAAGTTGAAGGAGGTGAA
GGAGCTCCATCCGGAGTGGGATGAGCACACCATCTTGGGCAAGTTGGTGG
GCTACTGCTCGGACCAGGCTCACTCATCCGTGGAGCGGGCTGGTCTTCTG
GGCGGAGTAAAGCTCCGTTCCGTGCAGTCCGAGAATCACAGAATGCGTGG
TGCTGCCCTGGAAAAGGCCATCGAACAGGATGTGGCCGAGGGTTTGATTC
CCTTCTACGCGGTGGTCACCCTGGGCACCACCAACTCCTGCGCCTTCGAC
TACTTGGATGAGTGTGGACCGGTGGGAAACAAGCACAATTTGTGGATCCA
TGTGGACGCTGCCTATGCCGGATCCGCTTTCATTTGCCCCGAGTATCGCC
ACCTGATGAAGGGCATCGAATCAGCAGACTCTTTCAATTTCAATCCACAC
AAATGGATGCTGGTGAACTTTGACTGCTCGGCCATGTGGCTGAAGGATCC
CAGTTGGGTGGTCAACGCGTTCAATGTGGACCCTCTTTACCTGAAGCACG
ACATGCAGGGATCAGCTCCGGACTATCGTCACTGGCAAATCCCACTTGGA
CGGCGATTCAGGGCACTGAAGCTCTGGTTCGTCCTCCGGCTGTACGGTGT
CGAGAATCTCCAGGCCCACATCCGCAGACACTGCAACTTTGCCAAGCAGT
TCGGGGATCTCTGCGTGGCGGACTCCAGATTTGAACTGGCCGCCGAGATC
AATATGGGATTGGTCTGCTTCCGGCTGAAGGGCAGCAACGAGCGGAACGA
AGCTCTTCTCAAGCGAATCAATGGACGCGGCCACATCCACTTGGTTCCCG
CCAAGATCAAGGATGTCTACTTCCTGCGCATGGCCATTTGCTCGCGATTC
ACCCAGTCCGAGGACATGGAGTACTCGTGGAAGGAGGTCAGCGCCGCTGC
CGACGAGATGGAACAGGAGCAGGCAAGCTTTCTAGACCAT
BO09955.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddc-RC | 1533 | CG10697-PC | 99..1530 | 91..1522 | 7160 | 100 | Plus |
| Ddc-RD | 1428 | CG10697-PD | 1..1425 | 98..1522 | 7125 | 100 | Plus |
| Ddc-RB | 1428 | CG10697-PB | 1..1425 | 98..1522 | 7125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddc-RD | 2797 | CG10697-RD | 991..2496 | 17..1522 | 7530 | 100 | Plus |
| Ddc-RC | 2085 | CG10697-RC | 353..1784 | 91..1522 | 7160 | 100 | Plus |
| Ddc-RB | 1929 | CG10697-RB | 197..1628 | 91..1522 | 7160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19116784..19118130 | 1522..176 | 6735 | 100 | Minus |
| 2L | 23513712 | 2L | 19119155..19119316 | 178..17 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:13:57 has no hits.
BO09955.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:04 Download gff for
BO09955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RC | 97..1533 | 87..1526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:51 Download gff for
BO09955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RD | 963..2478 | 12..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:19 Download gff for
BO09955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RD | 991..2496 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:04 Download gff for
BO09955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RD | 963..2478 | 12..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:30 Download gff for
BO09955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RD | 991..2496 | 17..1524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:30 Download gff for
BO09955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19116782..19118128 | 178..1524 | 99 | <- | Minus |
| 2L | 19119156..19119316 | 17..177 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:19 Download gff for
BO09955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19116782..19118128 | 178..1524 | 99 | <- | Minus |
| arm_2L | 19119156..19119316 | 17..177 | 100 | | Minus |
BO09955.pep Sequence
Translation from 16 to 1540
> BO09955.pep
MSIGFRYRANNYARLITKYFCIHIKIDMEAPEFKDFAKTMVDFIAEYLEN
IRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHS
PKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLG
KMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPE
WDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHRMRGAALEK
AIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAY
AGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVN
AFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQA
HIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKR
INGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ
EQASFLDH
BO09955.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddc-PC | 510 | CG10697-PC | 32..510 | 24..502 | 2557 | 99.6 | Plus |
| Ddc-PD | 475 | CG10697-PD | 1..475 | 28..502 | 2544 | 100 | Plus |
| Ddc-PB | 475 | CG10697-PB | 1..475 | 28..502 | 2544 | 100 | Plus |
| Hdc-PC | 619 | CG3454-PC | 1..476 | 28..501 | 1390 | 52.5 | Plus |
| Hdc-PD | 847 | CG3454-PD | 1..476 | 28..501 | 1390 | 52.5 | Plus |
