Clone BO09964 Report

Search the DGRC for BO09964

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:99
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG42347-RB
Protein status:BO09964.pep: Imported from assembly
Sequenced Size:1372

Clone Sequence Records

BO09964.3prime Sequence

911 bp (869 high quality bases) assembled on 2006-04-19

> BO09964.3prime
ATGGTCTAGAAAGCTTGCTTTGCCGTGGATGAGGGCGTGTCGGTCGCGCT
GTCGCTGGGATCCGTACTCACCTCTGGAGGAGGAAAGGCTGTCCGCGCCG
TGGGTCCTCCTGGGATGGGGGTAGCTCGTCTCGCTCAGCGGAGCAATCAC
ATTCCCCTCCACGTCGAACACGTACGGACTGTTCGGATGCGTCTCCCAGC
GCACGATGAAGTTCTTAAGGTTGTCCTTCGTGGCATCCAGTTCTTTGTTC
TCAAGTTCAGCGTCGCCGCAGAGATTGGCCAGCTCCTCGTCCTGCTGCTG
GTCTTTCTGCTTCGCCTGCTGCACGGCAACCTCTTCCTCGTCGTCTTCGT
CCTCAATGGTTTCCGTGGAGTCCTCGGAGGATTCCGAGGGAGCTGTCACC
GGAGACACAGACTTCAGGCGCGACTTCGACGCCGCGGAGGCGGCCTTTGT
GATGGGCGTGGCCGTGGCGGCGGTGGCCGGCCGCTGCTGAAGCCATTTGT
GCTTCATGCACTCGGCGGCTGTCATCCGGGTGCTCAGGTCCTTGGCCAGC
AGCTTGGCTATGAAATCCAGACACTCGGGGGATATGCCATTAAAGCATTC
ATCCTCGAAGTCGTATTTTGCAATGGTTACATTTGACATTGTTTCAATGT
CGTTCTCGCCCATGAAAGGCGACAGTCCTGAGATGAGCACATAGCATATA
ACGCCAACACTCCACATATCTGTTCCATACGATATACAGTCAAAGTTCAC
AACTTCTGGCGCCACAAATTCCGGAGTGCCGAAGAGAACTCTGAGTCGCT
TATCAGGATCAAATTTACGAGCCAGTCCGAAGTCAATGATCTTGATGCGG
TTGCCCTTCTGTGTGAGCACCAAAATGTTTTCGGGCTTCAGATCGAGGTG
GACTATTCCAT

BO09964.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1776-PA 1341 CG1776-RA 446..1338 911..19 4465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
sqa-RB 2057 CG42347-RB 822..1714 911..19 4465 100 Minus
sqa-RD 6062 CG42347-RD 3670..4509 911..72 4200 100 Minus
sqa-RC 3214 CG42347-RC 822..1661 911..72 4200 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9719466..9719750 250..534 1425 100 Plus
2R 25286936 2R 9719000..9719232 19..251 1165 100 Plus
2R 25286936 2R 9719819..9719971 533..685 765 100 Plus
2R 25286936 2R 9721018..9721141 788..911 620 100 Plus
2R 25286936 2R 9720662..9720765 686..789 520 100 Plus
Blast to na_te.dros performed 2015-02-06 15:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 4230..4301 654..583 135 65.3 Minus

BO09964.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:20 Download gff for BO09964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1776-PA 446..1341 16..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:38 Download gff for BO09964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1776-PA 446..1341 16..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:18:56 Download gff for BO09964.3prime
Subject Subject Range Query Range Percent Splice Strand
sqa-RB 822..1720 13..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:05:29 Download gff for BO09964.3prime
Subject Subject Range Query Range Percent Splice Strand
sqa-RB 822..1720 13..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:05:29 Download gff for BO09964.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9718994..9719230 13..249 98 <- Plus
2R 9719466..9719748 250..532 100 <- Plus
2R 9719819..9719971 533..685 100 <- Plus
2R 9720662..9720765 686..789 100 <- Plus
2R 9721020..9721141 790..911 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:18:56 Download gff for BO09964.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5608167..5608270 686..789 100 <- Plus
arm_2R 5608525..5608646 790..911 100   Plus
arm_2R 5606499..5606735 13..249 98 <- Plus
arm_2R 5606971..5607253 250..532 100 <- Plus
arm_2R 5607324..5607476 533..685 100 <- Plus

BO09964.5prime Sequence

904 bp (870 high quality bases) assembled on 2006-04-19

> BO09964.5prime
GAAGTTATCAGTCGACATGATCTATATTGATGACTCAGAGCCGGAAGGTG
TTTTGGAACCGGCGTTTCCCATGCGCGATGTGACCATAAATCGCAACGTC
GATGCCCATAAACATTACGATGTGCTTGGTGAGGTGGGACGCGGAAAATT
CGGTACGGTGTACAAGTGCAGGGACAAGGCGAATGGACTGCAGCTGGCGG
CCAAGTTTGTGCCGATCCCCAAGCGCGAGGACAAGCGGAATGTGGAGCGG
GAGGTGGAGATAATGAATTCATTGCAGCATCACCTCATCATACAGTTGTA
CGCGGCATACGAATATCAGAAAATGATGTGCGTCGTCCTGGAACTCATCG
AAGGAGGTGAGCTCTTTGATCGCGTGGTGGACGATGAGTTCGTCCTCACC
GAACGAGTCTGCCGCGTCTTCATCCGCCAGGTGTGCGAGGCCATGGCCTT
CATCCACGGCAATGGAATAGTCCACCTCGATCTGAAGCCCGAAAACATTT
TGGTGCTCACACAGAAGGGCAACCGCATCAAGATCATTGACTTCGGACTG
GCTCGTAAATTTGATCCTGATAAGCGACTCAGAGTTCTCTTCGGCACTCC
GGAATTTGTGGCGCCAGAAGTTGTGAACTTTGACTGTATATCGTATGGAA
CAGATATGTGGAGTGTTGGCGTTATATGCTATGTGCTCATCTCAGGACTG
TCGCCTTTCATGGGCGAGAACGACATTGAAACAATGTCAAATGTAACCAT
TGCAAAATACGACTTCGAGGATGAATGCTTTAATGGCATATCCCCCGAGT
GTCTGGATTTCATAGCCAAGCTGCTGGCCAAGGACCTGAGCACCCGGATG
ACAGCCGCCGAGTGCATGAAGCANCAATGGCTTCAGCAGCGGCCGGCCAC
CGCC

BO09964.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1776-PA 1341 CG1776-RA 1..888 17..904 4371 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
sqa-RD 6062 CG42347-RD 3225..4112 17..904 4399 99.7 Plus
sqa-RC 3214 CG42347-RC 377..1264 17..904 4399 99.7 Plus
sqa-RB 2057 CG42347-RB 377..1264 17..904 4399 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9721018..9721257 585..346 1200 100 Minus
2R 25286936 2R 9723540..9723744 345..141 1025 100 Minus
2R 25286936 2R 9719819..9719971 840..688 765 100 Minus
2R 25286936 2R 9720662..9720765 687..584 520 100 Minus
2R 25286936 2R 9723829..9723920 141..50 460 100 Minus
2R 25286936 2R 9719685..9719750 904..839 304 97 Minus
Blast to na_te.dros performed 2015-02-11 23:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 4230..4301 719..790 135 65.3 Plus

BO09964.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:21 Download gff for BO09964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1776-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:39 Download gff for BO09964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1776-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:11:40 Download gff for BO09964.5prime
Subject Subject Range Query Range Percent Splice Strand
sqa-RB 370..1264 9..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:44 Download gff for BO09964.5prime
Subject Subject Range Query Range Percent Splice Strand
sqa-RB 370..1264 9..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:44 Download gff for BO09964.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9719685..9719748 841..904 96 <- Minus
2R 9719819..9719971 688..840 100 <- Minus
2R 9720662..9720765 584..687 100 <- Minus
2R 9721020..9721257 346..583 100 <- Minus
2R 9723540..9723743 142..345 100 <- Minus
2R 9723829..9723919 51..141 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:11:40 Download gff for BO09964.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5607190..5607253 841..904 96 <- Minus
arm_2R 5607324..5607476 688..840 100 <- Minus
arm_2R 5608167..5608270 584..687 100 <- Minus
arm_2R 5608525..5608762 346..583 100 <- Minus
arm_2R 5611045..5611248 142..345 100 <- Minus
arm_2R 5611334..5611424 51..141 100 <- Minus

BO09964.complete Sequence

1372 bp assembled on 2008-08-15

GenBank Submission: FJ631624

> BO09964.complete
GAAGTTATCAGTCGACATGATCTATATTGATGACTCAGAGCCGGAAGGTG
TTTTGGAACCGGCGTTTCCCATGCGCGATGTGACCATAAATCGCAACGTC
GATGCCCATAAACATTACGATGTGCTTGGTGAGGTGGGACGCGGAAAATT
CGGTACGGTGTACAAGTGCAGGGACAAGGCGAATGGACTGCAGCTGGCGG
CCAAGTTTGTGCCGATCCCCAAGCGCGAGGACAAGCGGAATGTGGAGCGG
GAGGTGGAGATAATGAATTCATTGCAGCATCACCTCATCATACAGTTGTA
CGCGGCATACGAATATCAGAAAATGATGTGCGTCGTCCTGGAACTCATCG
AAGGAGGTGAGCTCTTTGATCGCGTGGTGGACGATGAGTTCGTCCTCACC
GAACGAGTCTGCCGCGTCTTCATCCGCCAGGTGTGCGAGGCCATGGCCTT
CATCCACGGCAATGGAATAGTCCACCTCGATCTGAAGCCCGAAAACATTT
TGGTGCTCACACAGAAGGGCAACCGCATCAAGATCATTGACTTCGGACTG
GCTCGTAAATTTGATCCTGATAAGCGACTCAGAGTTCTCTTCGGCACTCC
GGAATTTGTGGCGCCAGAAGTTGTGAACTTTGACTGTATATCGTATGGAA
CAGATATGTGGAGTGTTGGCGTTATATGCTATGTGCTCATCTCAGGACTG
TCGCCTTTCATGGGCGAGAACGACATTGAAACAATGTCAAATGTAACCAT
TGCAAAATACGACTTCGAGGATGAATGCTTTAATGGCATATCCCCCGAGT
GTCTGGATTTCATAGCCAAGCTGCTGGCCAAGGACCTGAGCACCCGGATG
ACAGCCGCCGAGTGCATGAAGCACAAATGGCTTCAGCAGCGGCCGGCCAC
CGCCGCCACGGCCACGCCCATCACAAAGGCCGCCTCCGCGGCGTCGAAGT
CGCGCCTGAAGTCTGTGTCTCCGGTGACAGCTCCCTCGGAATCCTCCGAG
GACTCCACGGAAACCATTGAGGACGAAGACGACGAGGAAGAGGTTGCCGT
GCAGCAGGCGAAGCAGAAAGACCAGCAGCAGGACGAGGAGCTGGCCAATC
TCTGCGGCGACGCTGAACTTGAGAACAAAGAACTGGATGCCACGAAGGAC
AACCTTAAGAACTTCATCGTGCGCTGGGAGACGCATCCGAACAGTCCGTA
CGTGTTCGACGTGGAGGGGAATGTGATTGCTCCGCTGAGCGAGACGAGCT
ACCCCCATCCCAGGAGGACCCACGGCGCGGACAGCCTTTCCTCCTCCAGA
GGTGAGTACGGATCCCAGCGACAGCGCGACCGACACGCCCTCATCCACGG
CAAAGCAAGCTTTCTAGACCAT

BO09964.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
sqa-RB 1341 CG42347-PB 1..1338 17..1354 6675 99.9 Plus
sqa-RD 2667 CG42347-PD 1..1285 17..1301 6410 99.9 Plus
sqa-RC 2667 CG42347-PC 1..1285 17..1301 6410 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
sqa-RB 2057 CG42347-RB 377..1714 17..1354 6675 99.9 Plus
sqa-RD 6062 CG42347-RD 3225..4509 17..1301 6410 99.9 Plus
sqa-RC 3214 CG42347-RC 377..1661 17..1301 6410 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9719466..9719750 1123..839 1425 100 Minus
2R 25286936 2R 9721018..9721257 585..346 1200 100 Minus
2R 25286936 2R 9719000..9719232 1354..1122 1165 100 Minus
2R 25286936 2R 9723540..9723744 345..141 1025 100 Minus
2R 25286936 2R 9719819..9719971 840..688 765 100 Minus
2R 25286936 2R 9720662..9720765 687..584 520 100 Minus
2R 25286936 2R 9723829..9723920 141..50 460 100 Minus
Blast to na_te.dros performed 2014-11-27 13:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 4230..4301 719..790 135 65.3 Plus

BO09964.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:55 Download gff for BO09964.complete
Subject Subject Range Query Range Percent Splice Strand
CG42347-RB 370..1720 9..1360 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:37 Download gff for BO09964.complete
Subject Subject Range Query Range Percent Splice Strand
sqa-RB 377..1714 17..1356 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:29 Download gff for BO09964.complete
Subject Subject Range Query Range Percent Splice Strand
CG42347-RB 377..1714 17..1356 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:06 Download gff for BO09964.complete
Subject Subject Range Query Range Percent Splice Strand
sqa-RB 377..1714 17..1356 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:06 Download gff for BO09964.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9718997..9719230 1124..1356 99 <- Minus
2R 9719466..9719748 841..1123 100 <- Minus
2R 9719819..9719971 688..840 100 <- Minus
2R 9720662..9720765 584..687 100 <- Minus
2R 9721020..9721257 346..583 100 <- Minus
2R 9723540..9723743 142..345 100 <- Minus
2R 9723829..9723919 51..141 100 <- Minus
2R 9744864..9744897 17..50 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:37 Download gff for BO09964.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5611334..5611424 51..141 100 <- Minus
arm_2R 5632369..5632402 17..50 97   Minus
arm_2R 5606502..5606735 1124..1356 99 <- Minus
arm_2R 5606971..5607253 841..1123 100 <- Minus
arm_2R 5607324..5607476 688..840 100 <- Minus
arm_2R 5608167..5608270 584..687 100 <- Minus
arm_2R 5608525..5608762 346..583 100 <- Minus
arm_2R 5611045..5611248 142..345 100 <- Minus

BO09964.pep Sequence

Translation from 16 to 1372

> BO09964.pep
MIYIDDSEPEGVLEPAFPMRDVTINRNVDAHKHYDVLGEVGRGKFGTVYK
CRDKANGLQLAAKFVPIPKREDKRNVEREVEIMNSLQHHLIIQLYAAYEY
QKMMCVVLELIEGGELFDRVVDDEFVLTERVCRVFIRQVCEAMAFIHGNG
IVHLDLKPENILVLTQKGNRIKIIDFGLARKFDPDKRLRVLFGTPEFVAP
EVVNFDCISYGTDMWSVGVICYVLISGLSPFMGENDIETMSNVTIAKYDF
EDECFNGISPECLDFIAKLLAKDLSTRMTAAECMKHKWLQQRPATAATAT
PITKAASAASKSRLKSVSPVTAPSESSEDSTETIEDEDDEEEVAVQQAKQ
KDQQQDEELANLCGDAELENKELDATKDNLKNFIVRWETHPNSPYVFDVE
GNVIAPLSETSYPHPRRTHGADSLSSSRGEYGSQRQRDRHALIHGKASFL
DH

BO09964.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
sqa-PB 446 CG1776-PA 1..446 1..446 2326 100 Plus
sqa-PD 888 CG42347-PD 1..428 1..428 2228 100 Plus
sqa-PC 888 CG42347-PC 1..428 1..428 2228 100 Plus
Strn-Mlck-PN 602 CG44162-PN 261..538 17..293 743 48.9 Plus
Strn-Mlck-PG 732 CG44162-PG 133..410 17..293 743 48.9 Plus