Clone Sequence Records
BO09964.3prime Sequence
911 bp (869 high quality bases) assembled on 2006-04-19
> BO09964.3prime
ATGGTCTAGAAAGCTTGCTTTGCCGTGGATGAGGGCGTGTCGGTCGCGCT
GTCGCTGGGATCCGTACTCACCTCTGGAGGAGGAAAGGCTGTCCGCGCCG
TGGGTCCTCCTGGGATGGGGGTAGCTCGTCTCGCTCAGCGGAGCAATCAC
ATTCCCCTCCACGTCGAACACGTACGGACTGTTCGGATGCGTCTCCCAGC
GCACGATGAAGTTCTTAAGGTTGTCCTTCGTGGCATCCAGTTCTTTGTTC
TCAAGTTCAGCGTCGCCGCAGAGATTGGCCAGCTCCTCGTCCTGCTGCTG
GTCTTTCTGCTTCGCCTGCTGCACGGCAACCTCTTCCTCGTCGTCTTCGT
CCTCAATGGTTTCCGTGGAGTCCTCGGAGGATTCCGAGGGAGCTGTCACC
GGAGACACAGACTTCAGGCGCGACTTCGACGCCGCGGAGGCGGCCTTTGT
GATGGGCGTGGCCGTGGCGGCGGTGGCCGGCCGCTGCTGAAGCCATTTGT
GCTTCATGCACTCGGCGGCTGTCATCCGGGTGCTCAGGTCCTTGGCCAGC
AGCTTGGCTATGAAATCCAGACACTCGGGGGATATGCCATTAAAGCATTC
ATCCTCGAAGTCGTATTTTGCAATGGTTACATTTGACATTGTTTCAATGT
CGTTCTCGCCCATGAAAGGCGACAGTCCTGAGATGAGCACATAGCATATA
ACGCCAACACTCCACATATCTGTTCCATACGATATACAGTCAAAGTTCAC
AACTTCTGGCGCCACAAATTCCGGAGTGCCGAAGAGAACTCTGAGTCGCT
TATCAGGATCAAATTTACGAGCCAGTCCGAAGTCAATGATCTTGATGCGG
TTGCCCTTCTGTGTGAGCACCAAAATGTTTTCGGGCTTCAGATCGAGGTG
GACTATTCCAT
BO09964.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1776-PA | 1341 | CG1776-RA | 446..1338 | 911..19 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqa-RB | 2057 | CG42347-RB | 822..1714 | 911..19 | 4465 | 100 | Minus |
sqa-RD | 6062 | CG42347-RD | 3670..4509 | 911..72 | 4200 | 100 | Minus |
sqa-RC | 3214 | CG42347-RC | 822..1661 | 911..72 | 4200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9719466..9719750 | 250..534 | 1425 | 100 | Plus |
2R | 25286936 | 2R | 9719000..9719232 | 19..251 | 1165 | 100 | Plus |
2R | 25286936 | 2R | 9719819..9719971 | 533..685 | 765 | 100 | Plus |
2R | 25286936 | 2R | 9721018..9721141 | 788..911 | 620 | 100 | Plus |
2R | 25286936 | 2R | 9720662..9720765 | 686..789 | 520 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 15:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 4230..4301 | 654..583 | 135 | 65.3 | Minus |
BO09964.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:20 Download gff for
BO09964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1776-PA | 446..1341 | 16..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:38 Download gff for
BO09964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1776-PA | 446..1341 | 16..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:18:56 Download gff for
BO09964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqa-RB | 822..1720 | 13..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:05:29 Download gff for
BO09964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqa-RB | 822..1720 | 13..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:05:29 Download gff for
BO09964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9718994..9719230 | 13..249 | 98 | <- | Plus |
2R | 9719466..9719748 | 250..532 | 100 | <- | Plus |
2R | 9719819..9719971 | 533..685 | 100 | <- | Plus |
2R | 9720662..9720765 | 686..789 | 100 | <- | Plus |
2R | 9721020..9721141 | 790..911 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:18:56 Download gff for
BO09964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5608167..5608270 | 686..789 | 100 | <- | Plus |
arm_2R | 5608525..5608646 | 790..911 | 100 | | Plus |
arm_2R | 5606499..5606735 | 13..249 | 98 | <- | Plus |
arm_2R | 5606971..5607253 | 250..532 | 100 | <- | Plus |
arm_2R | 5607324..5607476 | 533..685 | 100 | <- | Plus |
BO09964.5prime Sequence
904 bp (870 high quality bases) assembled on 2006-04-19
> BO09964.5prime
GAAGTTATCAGTCGACATGATCTATATTGATGACTCAGAGCCGGAAGGTG
TTTTGGAACCGGCGTTTCCCATGCGCGATGTGACCATAAATCGCAACGTC
GATGCCCATAAACATTACGATGTGCTTGGTGAGGTGGGACGCGGAAAATT
CGGTACGGTGTACAAGTGCAGGGACAAGGCGAATGGACTGCAGCTGGCGG
CCAAGTTTGTGCCGATCCCCAAGCGCGAGGACAAGCGGAATGTGGAGCGG
GAGGTGGAGATAATGAATTCATTGCAGCATCACCTCATCATACAGTTGTA
CGCGGCATACGAATATCAGAAAATGATGTGCGTCGTCCTGGAACTCATCG
AAGGAGGTGAGCTCTTTGATCGCGTGGTGGACGATGAGTTCGTCCTCACC
GAACGAGTCTGCCGCGTCTTCATCCGCCAGGTGTGCGAGGCCATGGCCTT
CATCCACGGCAATGGAATAGTCCACCTCGATCTGAAGCCCGAAAACATTT
TGGTGCTCACACAGAAGGGCAACCGCATCAAGATCATTGACTTCGGACTG
GCTCGTAAATTTGATCCTGATAAGCGACTCAGAGTTCTCTTCGGCACTCC
GGAATTTGTGGCGCCAGAAGTTGTGAACTTTGACTGTATATCGTATGGAA
CAGATATGTGGAGTGTTGGCGTTATATGCTATGTGCTCATCTCAGGACTG
TCGCCTTTCATGGGCGAGAACGACATTGAAACAATGTCAAATGTAACCAT
TGCAAAATACGACTTCGAGGATGAATGCTTTAATGGCATATCCCCCGAGT
GTCTGGATTTCATAGCCAAGCTGCTGGCCAAGGACCTGAGCACCCGGATG
ACAGCCGCCGAGTGCATGAAGCANCAATGGCTTCAGCAGCGGCCGGCCAC
CGCC
BO09964.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1776-PA | 1341 | CG1776-RA | 1..888 | 17..904 | 4371 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqa-RD | 6062 | CG42347-RD | 3225..4112 | 17..904 | 4399 | 99.7 | Plus |
sqa-RC | 3214 | CG42347-RC | 377..1264 | 17..904 | 4399 | 99.7 | Plus |
sqa-RB | 2057 | CG42347-RB | 377..1264 | 17..904 | 4399 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9721018..9721257 | 585..346 | 1200 | 100 | Minus |
2R | 25286936 | 2R | 9723540..9723744 | 345..141 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 9719819..9719971 | 840..688 | 765 | 100 | Minus |
2R | 25286936 | 2R | 9720662..9720765 | 687..584 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9723829..9723920 | 141..50 | 460 | 100 | Minus |
2R | 25286936 | 2R | 9719685..9719750 | 904..839 | 304 | 97 | Minus |
Blast to na_te.dros performed 2015-02-11 23:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 4230..4301 | 719..790 | 135 | 65.3 | Plus |
BO09964.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:21 Download gff for
BO09964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1776-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:39 Download gff for
BO09964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1776-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:11:40 Download gff for
BO09964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqa-RB | 370..1264 | 9..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:44 Download gff for
BO09964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqa-RB | 370..1264 | 9..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:44 Download gff for
BO09964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9719685..9719748 | 841..904 | 96 | <- | Minus |
2R | 9719819..9719971 | 688..840 | 100 | <- | Minus |
2R | 9720662..9720765 | 584..687 | 100 | <- | Minus |
2R | 9721020..9721257 | 346..583 | 100 | <- | Minus |
2R | 9723540..9723743 | 142..345 | 100 | <- | Minus |
2R | 9723829..9723919 | 51..141 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:11:40 Download gff for
BO09964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5607190..5607253 | 841..904 | 96 | <- | Minus |
arm_2R | 5607324..5607476 | 688..840 | 100 | <- | Minus |
arm_2R | 5608167..5608270 | 584..687 | 100 | <- | Minus |
arm_2R | 5608525..5608762 | 346..583 | 100 | <- | Minus |
arm_2R | 5611045..5611248 | 142..345 | 100 | <- | Minus |
arm_2R | 5611334..5611424 | 51..141 | 100 | <- | Minus |
BO09964.complete Sequence
1372 bp assembled on 2008-08-15
GenBank Submission: FJ631624
> BO09964.complete
GAAGTTATCAGTCGACATGATCTATATTGATGACTCAGAGCCGGAAGGTG
TTTTGGAACCGGCGTTTCCCATGCGCGATGTGACCATAAATCGCAACGTC
GATGCCCATAAACATTACGATGTGCTTGGTGAGGTGGGACGCGGAAAATT
CGGTACGGTGTACAAGTGCAGGGACAAGGCGAATGGACTGCAGCTGGCGG
CCAAGTTTGTGCCGATCCCCAAGCGCGAGGACAAGCGGAATGTGGAGCGG
GAGGTGGAGATAATGAATTCATTGCAGCATCACCTCATCATACAGTTGTA
CGCGGCATACGAATATCAGAAAATGATGTGCGTCGTCCTGGAACTCATCG
AAGGAGGTGAGCTCTTTGATCGCGTGGTGGACGATGAGTTCGTCCTCACC
GAACGAGTCTGCCGCGTCTTCATCCGCCAGGTGTGCGAGGCCATGGCCTT
CATCCACGGCAATGGAATAGTCCACCTCGATCTGAAGCCCGAAAACATTT
TGGTGCTCACACAGAAGGGCAACCGCATCAAGATCATTGACTTCGGACTG
GCTCGTAAATTTGATCCTGATAAGCGACTCAGAGTTCTCTTCGGCACTCC
GGAATTTGTGGCGCCAGAAGTTGTGAACTTTGACTGTATATCGTATGGAA
CAGATATGTGGAGTGTTGGCGTTATATGCTATGTGCTCATCTCAGGACTG
TCGCCTTTCATGGGCGAGAACGACATTGAAACAATGTCAAATGTAACCAT
TGCAAAATACGACTTCGAGGATGAATGCTTTAATGGCATATCCCCCGAGT
GTCTGGATTTCATAGCCAAGCTGCTGGCCAAGGACCTGAGCACCCGGATG
ACAGCCGCCGAGTGCATGAAGCACAAATGGCTTCAGCAGCGGCCGGCCAC
CGCCGCCACGGCCACGCCCATCACAAAGGCCGCCTCCGCGGCGTCGAAGT
CGCGCCTGAAGTCTGTGTCTCCGGTGACAGCTCCCTCGGAATCCTCCGAG
GACTCCACGGAAACCATTGAGGACGAAGACGACGAGGAAGAGGTTGCCGT
GCAGCAGGCGAAGCAGAAAGACCAGCAGCAGGACGAGGAGCTGGCCAATC
TCTGCGGCGACGCTGAACTTGAGAACAAAGAACTGGATGCCACGAAGGAC
AACCTTAAGAACTTCATCGTGCGCTGGGAGACGCATCCGAACAGTCCGTA
CGTGTTCGACGTGGAGGGGAATGTGATTGCTCCGCTGAGCGAGACGAGCT
ACCCCCATCCCAGGAGGACCCACGGCGCGGACAGCCTTTCCTCCTCCAGA
GGTGAGTACGGATCCCAGCGACAGCGCGACCGACACGCCCTCATCCACGG
CAAAGCAAGCTTTCTAGACCAT
BO09964.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqa-RB | 1341 | CG42347-PB | 1..1338 | 17..1354 | 6675 | 99.9 | Plus |
sqa-RD | 2667 | CG42347-PD | 1..1285 | 17..1301 | 6410 | 99.9 | Plus |
sqa-RC | 2667 | CG42347-PC | 1..1285 | 17..1301 | 6410 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqa-RB | 2057 | CG42347-RB | 377..1714 | 17..1354 | 6675 | 99.9 | Plus |
sqa-RD | 6062 | CG42347-RD | 3225..4509 | 17..1301 | 6410 | 99.9 | Plus |
sqa-RC | 3214 | CG42347-RC | 377..1661 | 17..1301 | 6410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9719466..9719750 | 1123..839 | 1425 | 100 | Minus |
2R | 25286936 | 2R | 9721018..9721257 | 585..346 | 1200 | 100 | Minus |
2R | 25286936 | 2R | 9719000..9719232 | 1354..1122 | 1165 | 100 | Minus |
2R | 25286936 | 2R | 9723540..9723744 | 345..141 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 9719819..9719971 | 840..688 | 765 | 100 | Minus |
2R | 25286936 | 2R | 9720662..9720765 | 687..584 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9723829..9723920 | 141..50 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 4230..4301 | 719..790 | 135 | 65.3 | Plus |
BO09964.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:55 Download gff for
BO09964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42347-RB | 370..1720 | 9..1360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:37 Download gff for
BO09964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqa-RB | 377..1714 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:29 Download gff for
BO09964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42347-RB | 377..1714 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:06 Download gff for
BO09964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqa-RB | 377..1714 | 17..1356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:06 Download gff for
BO09964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9718997..9719230 | 1124..1356 | 99 | <- | Minus |
2R | 9719466..9719748 | 841..1123 | 100 | <- | Minus |
2R | 9719819..9719971 | 688..840 | 100 | <- | Minus |
2R | 9720662..9720765 | 584..687 | 100 | <- | Minus |
2R | 9721020..9721257 | 346..583 | 100 | <- | Minus |
2R | 9723540..9723743 | 142..345 | 100 | <- | Minus |
2R | 9723829..9723919 | 51..141 | 100 | <- | Minus |
2R | 9744864..9744897 | 17..50 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:37 Download gff for
BO09964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5611334..5611424 | 51..141 | 100 | <- | Minus |
arm_2R | 5632369..5632402 | 17..50 | 97 | | Minus |
arm_2R | 5606502..5606735 | 1124..1356 | 99 | <- | Minus |
arm_2R | 5606971..5607253 | 841..1123 | 100 | <- | Minus |
arm_2R | 5607324..5607476 | 688..840 | 100 | <- | Minus |
arm_2R | 5608167..5608270 | 584..687 | 100 | <- | Minus |
arm_2R | 5608525..5608762 | 346..583 | 100 | <- | Minus |
arm_2R | 5611045..5611248 | 142..345 | 100 | <- | Minus |
BO09964.pep Sequence
Translation from 16 to 1372
> BO09964.pep
MIYIDDSEPEGVLEPAFPMRDVTINRNVDAHKHYDVLGEVGRGKFGTVYK
CRDKANGLQLAAKFVPIPKREDKRNVEREVEIMNSLQHHLIIQLYAAYEY
QKMMCVVLELIEGGELFDRVVDDEFVLTERVCRVFIRQVCEAMAFIHGNG
IVHLDLKPENILVLTQKGNRIKIIDFGLARKFDPDKRLRVLFGTPEFVAP
EVVNFDCISYGTDMWSVGVICYVLISGLSPFMGENDIETMSNVTIAKYDF
EDECFNGISPECLDFIAKLLAKDLSTRMTAAECMKHKWLQQRPATAATAT
PITKAASAASKSRLKSVSPVTAPSESSEDSTETIEDEDDEEEVAVQQAKQ
KDQQQDEELANLCGDAELENKELDATKDNLKNFIVRWETHPNSPYVFDVE
GNVIAPLSETSYPHPRRTHGADSLSSSRGEYGSQRQRDRHALIHGKASFL
DH
BO09964.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqa-PB | 446 | CG1776-PA | 1..446 | 1..446 | 2326 | 100 | Plus |
sqa-PD | 888 | CG42347-PD | 1..428 | 1..428 | 2228 | 100 | Plus |
sqa-PC | 888 | CG42347-PC | 1..428 | 1..428 | 2228 | 100 | Plus |
Strn-Mlck-PN | 602 | CG44162-PN | 261..538 | 17..293 | 743 | 48.9 | Plus |
Strn-Mlck-PG | 732 | CG44162-PG | 133..410 | 17..293 | 743 | 48.9 | Plus |