Clone BO09966 Report

Search the DGRC for BO09966

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:99
Well:66
Vector:pDNR-Dual
Associated Gene/Transcriptyellow-f2-RA
Protein status:BO09966.pep: Imported from assembly
Sequenced Size:1390

Clone Sequence Records

BO09966.3prime Sequence

932 bp (844 high quality bases) assembled on 2006-04-19

> BO09966.3prime
ATGGTCTAGAAAGCTTGCCTCACATACTGTGCCCCTCTTGGCCAGTGAAG
CCTTCTGCTTCCAAATCCGGAAATTGTATATACTCGTGTCCAGTGTGGAG
TAGATGAAGATGGGCATGGAGTTGGACATGACCCAAATGGTGCCATCCTC
GTCAATCGACAAGTCGCTGGGATAAATCATATCCTCGGCATTGGAATCCA
CAGAGCCATAGTTTTCCGCCGAGATGGGCTTGCTGGTCTTCCAGCAGCCC
ACTCCGTTGCGCTGGATCTCATCGAAGAAGATCACCCCAGTCCCAGGATC
GTAAGCGTGCATCGTAGACTGGGTGGACGGACCACGGCTTCCGAGTACCC
GGAAATCGTTCCCATGATCGGAACGTGCGGCGTTGGATTCCTGCTGCAGA
ACCCGGTTGGAGACCACAAACTCATTCGTACTGGCCATGGGATGGAAGTA
GGCATCGCGGCTCCCATCCAGTTTCTGGGCCCCCAAAGTTATTGAGAAGA
TGCCATCGTCCCAGCGGAAGGTCTGGCCGCCAATGCTGAGATCCCCGGAC
AGCGGATCGAAGTTGAAGTAGTTGTGCTCGAAGGACCAGATTCTATCGTT
TCGCAGGTGATAGACGTACAGGCGCCGGTACACCAGATCCGGAATATAGG
CGTAGGCATCGCCACACTGACCCGCCTTCACATCCACGGTGATGCTGGCC
AATCCGCGACCCGTCTCAGCTATACTCTCCGGAACATCGAAGCGCTTCAG
CACCTGATCCGTGGCCAAGTCAACTACCCAAATGCTGGGACGGCGGATCT
GTTGGCGGTTATTTGGATACTCCAGCATTCCCGTGTCGATAAACCAGAGA
CGCTGGCATGCATCCACGGAGGTTCTGTAGACGGACACCAGATTCTCCGC
ACTCGCGTTGAACTGATTAAGCGCAAAGTTGG

BO09966.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8063-PA 1359 yellow-f2-RA 443..1356 932..19 4545 99.8 Minus
CG18550-PA 1290 yellow-f-RA 689..733 617..573 175 95.5 Minus
CG18550-PA 1290 yellow-f-RA 1167..1199 139..107 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f2-RA 1462 CG8063-RA 485..1398 932..19 4555 99.9 Minus
yellow-f-RC 1391 CG18550-RC 382..1295 932..19 1495 77.7 Minus
yellow-f-RB 1406 CG18550-RB 397..1310 932..19 1495 77.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12993664..12994326 157..819 3300 99.8 Plus
3R 32079331 3R 12991747..12992399 160..812 1030 77.2 Plus
3R 32079331 3R 12993459..12993597 19..157 680 99.3 Plus
3R 32079331 3R 12994428..12994547 813..932 600 100 Plus
3R 32079331 3R 12991545..12991683 19..157 245 78.4 Plus
3R 32079331 3R 12992468..12992585 815..932 245 80.5 Plus
Blast to na_te.dros performed on 2015-02-10 19:38:41 has no hits.

BO09966.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:24 Download gff for BO09966.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8063-PA 443..1359 16..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:42 Download gff for BO09966.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8063-PA 443..1359 16..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:27:59 Download gff for BO09966.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 485..1398 19..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:39 Download gff for BO09966.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 485..1398 19..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:39 Download gff for BO09966.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12993459..12993596 19..156 99 <- Plus
3R 12993664..12994319 157..812 100 <- Plus
3R 12994428..12994547 813..932 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:27:59 Download gff for BO09966.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8819181..8819318 19..156 99 <- Plus
arm_3R 8819386..8820041 157..812 100 <- Plus
arm_3R 8820150..8820269 813..932 100   Plus

BO09966.5prime Sequence

899 bp (815 high quality bases) assembled on 2006-04-19

> BO09966.5prime
GAAGTTATCAGTCGACATGTTATCGCCCCAATTTTTGATTCTAAGTTTAA
TCTCAGGGTTACAGCTGCTTTCCTTGGCAGATGCTGATCCCATGATAGAG
GTCTTCCGATGGAAGCAGATGGACTTTTACAATCGCGGAGATGGCCATCT
AAGCTCGGGCGGAAGGAAAGACAGGCCCAGCTTTTCAGCTCCGGTTGTCT
TTCCTGGAAAGTATTCTCGTCGAAAGCGTAAGATTATGACCTCCCGCGAT
ACACCGGTAGTGGTCAGCTCCCGCGCCGACAGCGACGACCCCAACGCCTC
CTACATTCCGTACAATAACGTGCCCATGGGAGCCACTCACTTCCGCGGCC
GCCTCTTTGTCACGATGCCTCGTCGACGGGTGGGCATCCCATCCACCTTG
AATTACATCGATCTGGCCGAGGACGGATCGAATCGCAGCCCCAAGCTGCG
GGCCTATCCCAACTTTGCGCTTAATCAGTTCAACGCGAGTGCGGAGAATC
TGGTGTCCGTCTACAGAACCTCCGTGGATGCATGCCAGCGTCTCTGGTTT
ATCGACACGGGAATGCTGGAGTATCCAAATAACCGCCAACAGATCCGCCG
TCCCAGCATTTGGGTAGTTGACTTGGCCACGGATCAGGTGCTGAAGCGCT
TCGATGTTCCGGAGAGTATAGCTGAGACGGGTCGCGGATTGGCCAGCATC
ACCGTGGATGTGAAGGCGGGTCAGTGTGGCGATGCCTACGCCTATATTCC
GGATCTGGTGTACCGGCGCCTGTACGTCTATCACCTGCGAAACGATAGAA
TCTGGTCCTTCGAGCACAACTACTTCAACTTCGATCCGCTGTCGGGGGAT
CTCAGCATTGGCGGCCAGACCTTCCGCTGGGACGATGGCATCTTCTCAA

BO09966.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8063-PA 1359 yellow-f2-RA 1..883 17..899 4390 99.8 Plus
CG18550-PA 1290 yellow-f-RA 689..733 774..818 175 95.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f2-RA 1462 CG8063-RA 43..925 17..899 4400 99.9 Plus
yellow-f-RC 1391 CG18550-RC 234..820 311..897 970 77.7 Plus
yellow-f-RB 1406 CG18550-RB 249..835 311..897 970 77.7 Plus
yellow-f-RC 1391 CG18550-RC 89..185 49..145 245 83.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12994428..12994819 578..187 1960 100 Minus
3R 32079331 3R 12993999..12994326 899..572 1610 99.4 Minus
3R 32079331 3R 12994934..12995105 188..17 860 100 Minus
3R 32079331 3R 12992468..12992733 576..311 505 79.3 Minus
3R 32079331 3R 12992081..12992399 897..579 470 76.5 Minus
3R 32079331 3R 12993017..12993113 145..49 245 83.5 Minus
Blast to na_te.dros performed on 2015-02-11 17:56:57 has no hits.

BO09966.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:25 Download gff for BO09966.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8063-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:44 Download gff for BO09966.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8063-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:28:45 Download gff for BO09966.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 39..923 10..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:35 Download gff for BO09966.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 39..923 10..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:35 Download gff for BO09966.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12994428..12994817 189..578 100 <- Minus
3R 12994934..12995109 10..188 98   Minus
3R 12994001..12994319 579..897 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:28:45 Download gff for BO09966.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8819723..8820041 579..897 99 <- Minus
arm_3R 8820150..8820539 189..578 100 <- Minus
arm_3R 8820656..8820831 10..188 98   Minus

BO09966.complete Sequence

1390 bp assembled on 2008-08-15

GenBank Submission: FJ631625

> BO09966.complete
GAAGTTATCAGTCGACATGTTATCGCCCCAATTTTTGATTCTAAGTTTAA
TCTCAGGGTTACAGCTGCTTTCCTTGGCAGATGCTGATCCCATGATAGAG
GTCTTCCGATGGAAGCAGATGGACTTTTACAATCGCGGAGATGGCCATCT
AAGCTCGGGCGGAAGGAAAGACAGGCCCAGCTTTTCAGCTCCGGTTGTCT
TTCCTGGAAAGTATTCTCGTCGAAAGCGTAAGATTATGACCTCCCGCGAT
ACACCGGTAGTGGTCAGCTCCCGCGCCGACAGCGACGACCCCAACGCCTC
CTACATTCCGTACAATAACGTGCCCATGGGAGCCACTCACTTCCGCGGCC
GCCTCTTTGTCACGATGCCTCGTCGACGGGTGGGCATCCCATCCACCTTG
AATTACATCGATCTGGCCGAGGACGGATCGAATCGCAGCCCCAAGCTGCG
GGCCTATCCCAACTTTGCGCTTAATCAGTTCAACGCGAGTGCGGAGAATC
TGGTGTCCGTCTACAGAACCTCCGTGGATGCATGCCAGCGTCTCTGGTTT
ATCGACACGGGAATGCTGGAGTATCCAAATAACCGCCAACAGATCCGCCG
TCCCAGCATTTGGGTAGTTGACTTGGCCACGGATCAGGTGCTGAAGCGCT
TCGATGTTCCGGAGAGTATAGCTGAGACGGGTCGCGGATTGGCCAGCATC
ACCGTGGATGTGAAGGCGGGTCAGTGTGGCGATGCCTACGCCTATATTCC
GGATCTGGTGTACCGGCGCCTGTACGTCTATCACCTGCGAAACGATAGAA
TCTGGTCCTTCGAGCACAACTACTTCAACTTCGATCCGCTGTCCGGGGAT
CTCAGCATTGGCGGCCAGACCTTCCGCTGGGACGATGGCATCTTCTCAAT
AACTTTGGGGGCCCAGAAACTGGATGGGAGCCGCGATGCCTACTTCCATC
CCATGGCCAGTACGAATGAGTTTGTGGTCTCCAACCGGGTTCTGCAGCAG
GAATCCAACGCCGCACGTTCCGATCATGGGAACGATTTCCGGGTACTCGG
AAGCCGTGGTCCGTCCACCCAGTCTACGATGCACGCTTACGATCCTGGGA
CTGGGGTGATCTTCTTCGATGAGATCCAGCGCAACGGAGTGGGCTGCTGG
AAGACCAGCAAGCCCATCTCGGCGGAAAACTATGGCTCTGTGGATTCCAA
TGCCGAGGATATGATTTATCCCAGCGACTTGTCGATTGACGAGGATGGCA
CCATTTGGGTCATGTCCAACTCCATGCCCATCTTCATCTACTCCACACTG
GACACGAGTATATACAATTTCCGGATTTGGAAGCAGAAGGCTTCACTGGC
CAAGAGGGGCACAGTATGTGAGGCAAGCTTTCTAGACCAT

BO09966.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f2-RA 1359 CG8063-PA 1..1356 17..1372 6765 99.9 Plus
yellow-f-RC 1242 CG18550-PC 178..1239 311..1372 1755 77.7 Plus
yellow-f-RB 1257 CG18550-PB 193..1254 311..1372 1755 77.7 Plus
yellow-f-RC 1242 CG18550-PC 33..129 49..145 245 83.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f2-RA 1462 CG8063-RA 43..1398 17..1372 6765 99.9 Plus
yellow-f-RC 1391 CG18550-RC 234..1295 311..1372 1755 77.7 Plus
yellow-f-RB 1406 CG18550-RB 249..1310 311..1372 1755 77.7 Plus
yellow-f-RC 1391 CG18550-RC 89..185 49..145 245 83.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12993664..12994326 1234..572 3300 99.8 Minus
3R 32079331 3R 12994428..12994819 578..187 1960 100 Minus
3R 32079331 3R 12991747..12992399 1231..579 1030 77.2 Minus
3R 32079331 3R 12994934..12995105 188..17 860 100 Minus
3R 32079331 3R 12993459..12993597 1372..1234 680 99.3 Minus
3R 32079331 3R 12992468..12992733 576..311 505 79.3 Minus
3R 32079331 3R 12991545..12991683 1372..1234 245 78.4 Minus
3R 32079331 3R 12993017..12993113 145..49 245 83.5 Minus
Blast to na_te.dros performed on 2014-11-27 20:22:21 has no hits.

BO09966.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:48 Download gff for BO09966.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 39..1398 10..1372 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:57 Download gff for BO09966.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 48..1398 22..1374 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:43 Download gff for BO09966.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 48..1398 22..1374 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:13 Download gff for BO09966.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 48..1398 22..1374 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:13 Download gff for BO09966.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12993456..12993596 1235..1374 97 <- Minus
3R 12993664..12994319 579..1234 100 <- Minus
3R 12994428..12994817 189..578 100 <- Minus
3R 12994934..12995100 22..188 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:57 Download gff for BO09966.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8819178..8819318 1235..1374 97 <- Minus
arm_3R 8819386..8820041 579..1234 100 <- Minus
arm_3R 8820150..8820539 189..578 100 <- Minus
arm_3R 8820656..8820822 22..188 100   Minus

BO09966.pep Sequence

Translation from 16 to 1390

> BO09966.pep
MLSPQFLILSLISGLQLLSLADADPMIEVFRWKQMDFYNRGDGHLSSGGR
KDRPSFSAPVVFPGKYSRRKRKIMTSRDTPVVVSSRADSDDPNASYIPYN
NVPMGATHFRGRLFVTMPRRRVGIPSTLNYIDLAEDGSNRSPKLRAYPNF
ALNQFNASAENLVSVYRTSVDACQRLWFIDTGMLEYPNNRQQIRRPSIWV
VDLATDQVLKRFDVPESIAETGRGLASITVDVKAGQCGDAYAYIPDLVYR
RLYVYHLRNDRIWSFEHNYFNFDPLSGDLSIGGQTFRWDDGIFSITLGAQ
KLDGSRDAYFHPMASTNEFVVSNRVLQQESNAARSDHGNDFRVLGSRGPS
TQSTMHAYDPGTGVIFFDEIQRNGVGCWKTSKPISAENYGSVDSNAEDMI
YPSDLSIDEDGTIWVMSNSMPIFIYSTLDTSIYNFRIWKQKASLAKRGTV
CEASFLDH

BO09966.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f2-PA 452 CG8063-PA 1..452 1..452 2385 100 Plus
yellow-f-PA 429 CG18550-PA 1..429 1..452 1666 69.5 Plus
yellow-f-PB 418 CG18550-PB 1..418 1..452 1654 69.2 Plus
yellow-f-PC 413 CG18550-PC 1..413 1..452 1646 69 Plus
yellow-c-PB 438 CG4182-PB 52..437 93..452 812 39.2 Plus