Clone Sequence Records
BO09966.3prime Sequence
932 bp (844 high quality bases) assembled on 2006-04-19
> BO09966.3prime
ATGGTCTAGAAAGCTTGCCTCACATACTGTGCCCCTCTTGGCCAGTGAAG
CCTTCTGCTTCCAAATCCGGAAATTGTATATACTCGTGTCCAGTGTGGAG
TAGATGAAGATGGGCATGGAGTTGGACATGACCCAAATGGTGCCATCCTC
GTCAATCGACAAGTCGCTGGGATAAATCATATCCTCGGCATTGGAATCCA
CAGAGCCATAGTTTTCCGCCGAGATGGGCTTGCTGGTCTTCCAGCAGCCC
ACTCCGTTGCGCTGGATCTCATCGAAGAAGATCACCCCAGTCCCAGGATC
GTAAGCGTGCATCGTAGACTGGGTGGACGGACCACGGCTTCCGAGTACCC
GGAAATCGTTCCCATGATCGGAACGTGCGGCGTTGGATTCCTGCTGCAGA
ACCCGGTTGGAGACCACAAACTCATTCGTACTGGCCATGGGATGGAAGTA
GGCATCGCGGCTCCCATCCAGTTTCTGGGCCCCCAAAGTTATTGAGAAGA
TGCCATCGTCCCAGCGGAAGGTCTGGCCGCCAATGCTGAGATCCCCGGAC
AGCGGATCGAAGTTGAAGTAGTTGTGCTCGAAGGACCAGATTCTATCGTT
TCGCAGGTGATAGACGTACAGGCGCCGGTACACCAGATCCGGAATATAGG
CGTAGGCATCGCCACACTGACCCGCCTTCACATCCACGGTGATGCTGGCC
AATCCGCGACCCGTCTCAGCTATACTCTCCGGAACATCGAAGCGCTTCAG
CACCTGATCCGTGGCCAAGTCAACTACCCAAATGCTGGGACGGCGGATCT
GTTGGCGGTTATTTGGATACTCCAGCATTCCCGTGTCGATAAACCAGAGA
CGCTGGCATGCATCCACGGAGGTTCTGTAGACGGACACCAGATTCTCCGC
ACTCGCGTTGAACTGATTAAGCGCAAAGTTGG
BO09966.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8063-PA | 1359 | yellow-f2-RA | 443..1356 | 932..19 | 4545 | 99.8 | Minus |
CG18550-PA | 1290 | yellow-f-RA | 689..733 | 617..573 | 175 | 95.5 | Minus |
CG18550-PA | 1290 | yellow-f-RA | 1167..1199 | 139..107 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f2-RA | 1462 | CG8063-RA | 485..1398 | 932..19 | 4555 | 99.9 | Minus |
yellow-f-RC | 1391 | CG18550-RC | 382..1295 | 932..19 | 1495 | 77.7 | Minus |
yellow-f-RB | 1406 | CG18550-RB | 397..1310 | 932..19 | 1495 | 77.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12993664..12994326 | 157..819 | 3300 | 99.8 | Plus |
3R | 32079331 | 3R | 12991747..12992399 | 160..812 | 1030 | 77.2 | Plus |
3R | 32079331 | 3R | 12993459..12993597 | 19..157 | 680 | 99.3 | Plus |
3R | 32079331 | 3R | 12994428..12994547 | 813..932 | 600 | 100 | Plus |
3R | 32079331 | 3R | 12991545..12991683 | 19..157 | 245 | 78.4 | Plus |
3R | 32079331 | 3R | 12992468..12992585 | 815..932 | 245 | 80.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:38:41 has no hits.
BO09966.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:24 Download gff for
BO09966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8063-PA | 443..1359 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:42 Download gff for
BO09966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8063-PA | 443..1359 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:27:59 Download gff for
BO09966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 485..1398 | 19..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:39 Download gff for
BO09966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 485..1398 | 19..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:39 Download gff for
BO09966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12993459..12993596 | 19..156 | 99 | <- | Plus |
3R | 12993664..12994319 | 157..812 | 100 | <- | Plus |
3R | 12994428..12994547 | 813..932 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:27:59 Download gff for
BO09966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8819181..8819318 | 19..156 | 99 | <- | Plus |
arm_3R | 8819386..8820041 | 157..812 | 100 | <- | Plus |
arm_3R | 8820150..8820269 | 813..932 | 100 | | Plus |
BO09966.5prime Sequence
899 bp (815 high quality bases) assembled on 2006-04-19
> BO09966.5prime
GAAGTTATCAGTCGACATGTTATCGCCCCAATTTTTGATTCTAAGTTTAA
TCTCAGGGTTACAGCTGCTTTCCTTGGCAGATGCTGATCCCATGATAGAG
GTCTTCCGATGGAAGCAGATGGACTTTTACAATCGCGGAGATGGCCATCT
AAGCTCGGGCGGAAGGAAAGACAGGCCCAGCTTTTCAGCTCCGGTTGTCT
TTCCTGGAAAGTATTCTCGTCGAAAGCGTAAGATTATGACCTCCCGCGAT
ACACCGGTAGTGGTCAGCTCCCGCGCCGACAGCGACGACCCCAACGCCTC
CTACATTCCGTACAATAACGTGCCCATGGGAGCCACTCACTTCCGCGGCC
GCCTCTTTGTCACGATGCCTCGTCGACGGGTGGGCATCCCATCCACCTTG
AATTACATCGATCTGGCCGAGGACGGATCGAATCGCAGCCCCAAGCTGCG
GGCCTATCCCAACTTTGCGCTTAATCAGTTCAACGCGAGTGCGGAGAATC
TGGTGTCCGTCTACAGAACCTCCGTGGATGCATGCCAGCGTCTCTGGTTT
ATCGACACGGGAATGCTGGAGTATCCAAATAACCGCCAACAGATCCGCCG
TCCCAGCATTTGGGTAGTTGACTTGGCCACGGATCAGGTGCTGAAGCGCT
TCGATGTTCCGGAGAGTATAGCTGAGACGGGTCGCGGATTGGCCAGCATC
ACCGTGGATGTGAAGGCGGGTCAGTGTGGCGATGCCTACGCCTATATTCC
GGATCTGGTGTACCGGCGCCTGTACGTCTATCACCTGCGAAACGATAGAA
TCTGGTCCTTCGAGCACAACTACTTCAACTTCGATCCGCTGTCGGGGGAT
CTCAGCATTGGCGGCCAGACCTTCCGCTGGGACGATGGCATCTTCTCAA
BO09966.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8063-PA | 1359 | yellow-f2-RA | 1..883 | 17..899 | 4390 | 99.8 | Plus |
CG18550-PA | 1290 | yellow-f-RA | 689..733 | 774..818 | 175 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f2-RA | 1462 | CG8063-RA | 43..925 | 17..899 | 4400 | 99.9 | Plus |
yellow-f-RC | 1391 | CG18550-RC | 234..820 | 311..897 | 970 | 77.7 | Plus |
yellow-f-RB | 1406 | CG18550-RB | 249..835 | 311..897 | 970 | 77.7 | Plus |
yellow-f-RC | 1391 | CG18550-RC | 89..185 | 49..145 | 245 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12994428..12994819 | 578..187 | 1960 | 100 | Minus |
3R | 32079331 | 3R | 12993999..12994326 | 899..572 | 1610 | 99.4 | Minus |
3R | 32079331 | 3R | 12994934..12995105 | 188..17 | 860 | 100 | Minus |
3R | 32079331 | 3R | 12992468..12992733 | 576..311 | 505 | 79.3 | Minus |
3R | 32079331 | 3R | 12992081..12992399 | 897..579 | 470 | 76.5 | Minus |
3R | 32079331 | 3R | 12993017..12993113 | 145..49 | 245 | 83.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:56:57 has no hits.
BO09966.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:25 Download gff for
BO09966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8063-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:44 Download gff for
BO09966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8063-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:28:45 Download gff for
BO09966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 39..923 | 10..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:35 Download gff for
BO09966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 39..923 | 10..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:35 Download gff for
BO09966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12994428..12994817 | 189..578 | 100 | <- | Minus |
3R | 12994934..12995109 | 10..188 | 98 | | Minus |
3R | 12994001..12994319 | 579..897 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:28:45 Download gff for
BO09966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8819723..8820041 | 579..897 | 99 | <- | Minus |
arm_3R | 8820150..8820539 | 189..578 | 100 | <- | Minus |
arm_3R | 8820656..8820831 | 10..188 | 98 | | Minus |
BO09966.complete Sequence
1390 bp assembled on 2008-08-15
GenBank Submission: FJ631625
> BO09966.complete
GAAGTTATCAGTCGACATGTTATCGCCCCAATTTTTGATTCTAAGTTTAA
TCTCAGGGTTACAGCTGCTTTCCTTGGCAGATGCTGATCCCATGATAGAG
GTCTTCCGATGGAAGCAGATGGACTTTTACAATCGCGGAGATGGCCATCT
AAGCTCGGGCGGAAGGAAAGACAGGCCCAGCTTTTCAGCTCCGGTTGTCT
TTCCTGGAAAGTATTCTCGTCGAAAGCGTAAGATTATGACCTCCCGCGAT
ACACCGGTAGTGGTCAGCTCCCGCGCCGACAGCGACGACCCCAACGCCTC
CTACATTCCGTACAATAACGTGCCCATGGGAGCCACTCACTTCCGCGGCC
GCCTCTTTGTCACGATGCCTCGTCGACGGGTGGGCATCCCATCCACCTTG
AATTACATCGATCTGGCCGAGGACGGATCGAATCGCAGCCCCAAGCTGCG
GGCCTATCCCAACTTTGCGCTTAATCAGTTCAACGCGAGTGCGGAGAATC
TGGTGTCCGTCTACAGAACCTCCGTGGATGCATGCCAGCGTCTCTGGTTT
ATCGACACGGGAATGCTGGAGTATCCAAATAACCGCCAACAGATCCGCCG
TCCCAGCATTTGGGTAGTTGACTTGGCCACGGATCAGGTGCTGAAGCGCT
TCGATGTTCCGGAGAGTATAGCTGAGACGGGTCGCGGATTGGCCAGCATC
ACCGTGGATGTGAAGGCGGGTCAGTGTGGCGATGCCTACGCCTATATTCC
GGATCTGGTGTACCGGCGCCTGTACGTCTATCACCTGCGAAACGATAGAA
TCTGGTCCTTCGAGCACAACTACTTCAACTTCGATCCGCTGTCCGGGGAT
CTCAGCATTGGCGGCCAGACCTTCCGCTGGGACGATGGCATCTTCTCAAT
AACTTTGGGGGCCCAGAAACTGGATGGGAGCCGCGATGCCTACTTCCATC
CCATGGCCAGTACGAATGAGTTTGTGGTCTCCAACCGGGTTCTGCAGCAG
GAATCCAACGCCGCACGTTCCGATCATGGGAACGATTTCCGGGTACTCGG
AAGCCGTGGTCCGTCCACCCAGTCTACGATGCACGCTTACGATCCTGGGA
CTGGGGTGATCTTCTTCGATGAGATCCAGCGCAACGGAGTGGGCTGCTGG
AAGACCAGCAAGCCCATCTCGGCGGAAAACTATGGCTCTGTGGATTCCAA
TGCCGAGGATATGATTTATCCCAGCGACTTGTCGATTGACGAGGATGGCA
CCATTTGGGTCATGTCCAACTCCATGCCCATCTTCATCTACTCCACACTG
GACACGAGTATATACAATTTCCGGATTTGGAAGCAGAAGGCTTCACTGGC
CAAGAGGGGCACAGTATGTGAGGCAAGCTTTCTAGACCAT
BO09966.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f2-RA | 1359 | CG8063-PA | 1..1356 | 17..1372 | 6765 | 99.9 | Plus |
yellow-f-RC | 1242 | CG18550-PC | 178..1239 | 311..1372 | 1755 | 77.7 | Plus |
yellow-f-RB | 1257 | CG18550-PB | 193..1254 | 311..1372 | 1755 | 77.7 | Plus |
yellow-f-RC | 1242 | CG18550-PC | 33..129 | 49..145 | 245 | 83.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f2-RA | 1462 | CG8063-RA | 43..1398 | 17..1372 | 6765 | 99.9 | Plus |
yellow-f-RC | 1391 | CG18550-RC | 234..1295 | 311..1372 | 1755 | 77.7 | Plus |
yellow-f-RB | 1406 | CG18550-RB | 249..1310 | 311..1372 | 1755 | 77.7 | Plus |
yellow-f-RC | 1391 | CG18550-RC | 89..185 | 49..145 | 245 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12993664..12994326 | 1234..572 | 3300 | 99.8 | Minus |
3R | 32079331 | 3R | 12994428..12994819 | 578..187 | 1960 | 100 | Minus |
3R | 32079331 | 3R | 12991747..12992399 | 1231..579 | 1030 | 77.2 | Minus |
3R | 32079331 | 3R | 12994934..12995105 | 188..17 | 860 | 100 | Minus |
3R | 32079331 | 3R | 12993459..12993597 | 1372..1234 | 680 | 99.3 | Minus |
3R | 32079331 | 3R | 12992468..12992733 | 576..311 | 505 | 79.3 | Minus |
3R | 32079331 | 3R | 12991545..12991683 | 1372..1234 | 245 | 78.4 | Minus |
3R | 32079331 | 3R | 12993017..12993113 | 145..49 | 245 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:22:21 has no hits.
BO09966.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:48 Download gff for
BO09966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 39..1398 | 10..1372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:57 Download gff for
BO09966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 48..1398 | 22..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:43 Download gff for
BO09966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 48..1398 | 22..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:13 Download gff for
BO09966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 48..1398 | 22..1374 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:13 Download gff for
BO09966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12993456..12993596 | 1235..1374 | 97 | <- | Minus |
3R | 12993664..12994319 | 579..1234 | 100 | <- | Minus |
3R | 12994428..12994817 | 189..578 | 100 | <- | Minus |
3R | 12994934..12995100 | 22..188 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:57 Download gff for
BO09966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8819178..8819318 | 1235..1374 | 97 | <- | Minus |
arm_3R | 8819386..8820041 | 579..1234 | 100 | <- | Minus |
arm_3R | 8820150..8820539 | 189..578 | 100 | <- | Minus |
arm_3R | 8820656..8820822 | 22..188 | 100 | | Minus |
BO09966.pep Sequence
Translation from 16 to 1390
> BO09966.pep
MLSPQFLILSLISGLQLLSLADADPMIEVFRWKQMDFYNRGDGHLSSGGR
KDRPSFSAPVVFPGKYSRRKRKIMTSRDTPVVVSSRADSDDPNASYIPYN
NVPMGATHFRGRLFVTMPRRRVGIPSTLNYIDLAEDGSNRSPKLRAYPNF
ALNQFNASAENLVSVYRTSVDACQRLWFIDTGMLEYPNNRQQIRRPSIWV
VDLATDQVLKRFDVPESIAETGRGLASITVDVKAGQCGDAYAYIPDLVYR
RLYVYHLRNDRIWSFEHNYFNFDPLSGDLSIGGQTFRWDDGIFSITLGAQ
KLDGSRDAYFHPMASTNEFVVSNRVLQQESNAARSDHGNDFRVLGSRGPS
TQSTMHAYDPGTGVIFFDEIQRNGVGCWKTSKPISAENYGSVDSNAEDMI
YPSDLSIDEDGTIWVMSNSMPIFIYSTLDTSIYNFRIWKQKASLAKRGTV
CEASFLDH
BO09966.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f2-PA | 452 | CG8063-PA | 1..452 | 1..452 | 2385 | 100 | Plus |
yellow-f-PA | 429 | CG18550-PA | 1..429 | 1..452 | 1666 | 69.5 | Plus |
yellow-f-PB | 418 | CG18550-PB | 1..418 | 1..452 | 1654 | 69.2 | Plus |
yellow-f-PC | 413 | CG18550-PC | 1..413 | 1..452 | 1646 | 69 | Plus |
yellow-c-PB | 438 | CG4182-PB | 52..437 | 93..452 | 812 | 39.2 | Plus |