Clone BO09970 Report

Search the DGRC for BO09970

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:99
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG9649-RA
Protein status:BO09970.pep: validated full length
Sequenced Size:1546

Clone Sequence Records

BO09970.3prime Sequence

902 bp (894 high quality bases) assembled on 2006-04-19

> BO09970.3prime
ATGGTCTAGAAAGCTTGCAAACCACATGCTACTGAGCAGCCACTCGATGT
GCTTGGCCACATCCGTATAGATGACAGGCAGCGTCAGATTGCATCTGTTG
GTCATTCGCTGTCCGGCTGAGACGACGCCGCGCAGCATCCAGATGTCCTG
CTCCTGGAGCATCAGTCCACCACCGGAATCTCCGCTGCAGGGACCGGACG
CCTGGGCATTGCTGGCACAGATCGTGTGCGAGGTGATAAACTTGGCGTTC
TCCTCGGACAGATTTCCACGACATTCCCACTGGGTGATGATGTCCGTGTC
TGTCATCTTGGCCAGTCGCGTGTTTCGGTTCCCCTTTTCATCCTCACCCC
AACCAGCCACATAGGACTTGTGACCCGAGGGCAGTTCGAGCAAAAAGTTC
TCGTTCCACAAACAGATGGGCTTGATGTAATCGCCAATATCAACGTGATT
AGACAACTGGAGCAGTGCTAAATCCGCATCGGTGTATACATTGGGATTGT
ACTGTTCGTGGATTAATAGTCGCGCTACACCTAGTGTAGCTCCCGACGAA
AAAAGATCCAAGGAGTTACGCCCCAGCGAAACAATAGTCCGCTCGCCCGG
CAAATTCCGACTGCCAAAGCGGAAGCAGTGGGCAGCCGAGATCACTGTTC
TGGCCGAGATCAGCGTTCCGCCGCACAAAAAGTTATAGTCCCTGCCAACG
TGCTCGAAAAGAGCGGCCATCCAGGGCAGCTGACCCCGCTCCACTTCAAT
TCCGTTGTGGATAAAGGGTGTCTGGATGACCTTTTCACGCCCACAGATTC
CGCTCAGTTGACCAATTGTCTGGGGATAGAACTTGGATGCTTGCGCGGGC
GTATTCGACGGATGAACTGAAGGTCTGGCTGACGTCTGGAACTCTGGGTT
CT

BO09970.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9649-PA 1515 CG9649-RA 634..1512 897..19 4395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9649-RA 1713 CG9649-RA 774..1652 897..19 4395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14216008..14216465 440..897 2290 100 Plus
3R 32079331 3R 14215520..14215940 19..439 2105 100 Plus
Blast to na_te.dros performed on 2015-02-06 15:59:20 has no hits.

BO09970.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:32 Download gff for BO09970.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9649-PA 630..1515 16..902 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:55 Download gff for BO09970.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9649-PA 630..1515 16..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:18:53 Download gff for BO09970.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9649-RA 770..1661 11..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:05:26 Download gff for BO09970.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9649-RA 770..1661 11..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:05:26 Download gff for BO09970.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14215511..14215940 11..439 99 <- Plus
3R 14216008..14216469 440..902 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:18:53 Download gff for BO09970.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10041233..10041662 11..439 99 <- Plus
arm_3R 10041730..10042191 440..902 99   Plus

BO09970.5prime Sequence

890 bp (792 high quality bases) assembled on 2006-04-19

> BO09970.5prime
GAAGTTATCAGTCGACATGCGCCAACTGCAGTTGCTTGGTTTTCTGATCG
CCATACTGCAAATCAGCTATATAAGTGCCCAAAACTTGCCATATATCCAG
TGTCCGATGATATTTCGGTACCTGGAGTACGACAATCAGTTCATTGGACA
CTTGCAGCTAACCCTGGATAGTACAAATACGGAGAACGTTGTGCGCGTTG
AACTTTCCCAGCGTGGCAGAAACACCCCGTCGACTCCGGGCACTCTTAAC
TTCTTGGAGGATGAGGATTCGCTGAGGCATCGCTTGACTAACAATGAGCC
CATCAACTACAGAATTGACTTTCCAACGCCGGGCGTGGTGCCCAAACTCA
CAAAGGTTACGGTTAATGGAAAAGTTGCGTGCGAGGCTGTGCCTTTTGGA
GCTCCTAGCACAAGGCTATCTTTGTCGCGAACTCTGCGAACTTCTGTGCC
TTTGGCAGCTATACCGCCGTCTCAGCGGACTGATCACCAATGGCCCCAGG
CCCCTCAGACCAACTACACTGTATATGAGGAGGAGGAGGAAGAGGAGCCA
GTTCAAAGACGCCGCCCACAACAGCGTCCTTCGAGGCCGCGTCCACAACA
GGCGCCGTCAAGACCACGGCTGCAACCCGTGCCTCAATTGCCACAAGAAC
CAGAGTTCCAGACGTCAGCCAGACCTTCAGTTCATCCGTCGAATACGCCC
GCGCAAGCATCCAAGTTCTATCCCCAGACAATTGGTCAACTGAGCGGAAT
CTGTGGGCGTGAAAAGGTCATCCAGACACCCTTTATCCACAACGGAATTG
AAGTGGAGCGGGGTCAGCTGCCCTGGATGGCCGCTCTTTTCGAGCACGTT
GGCAGGGACTATAACTTTTTGTGCGGCGGAACGCTGATCT

BO09970.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9649-PA 1515 CG9649-RA 1..874 17..890 4370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9649-RA 1713 CG9649-RA 136..1014 12..890 4380 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14216225..14216719 890..396 2475 100 Minus
3R 32079331 3R 14217530..14217747 229..12 1075 99.5 Minus
3R 32079331 3R 14216914..14217080 395..229 835 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:13:54 has no hits.

BO09970.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:33 Download gff for BO09970.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9649-PA 1..874 17..890 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:56 Download gff for BO09970.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9649-PA 1..874 17..890 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:44 Download gff for BO09970.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9649-RA 132..1014 4..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:42:11 Download gff for BO09970.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9649-RA 132..1014 4..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:42:11 Download gff for BO09970.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14216225..14216719 396..890 100 <- Minus
3R 14216914..14217079 230..395 100 <- Minus
3R 14217530..14217751 4..229 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:44 Download gff for BO09970.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10043252..10043473 4..229 97   Minus
arm_3R 10042636..10042801 230..395 100 <- Minus
arm_3R 10041947..10042441 396..890 100 <- Minus

BO09970.complete Sequence

1546 bp (1546 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631626

> BO09970.complete
GAAGTTATCAGTCGACATGCGCCAACTGCAGTTGCTTGGTTTTCTGATCG
CCATACTGCAAATCAGCTATATAAGTGCCCAAAACTTGCCATATATCCAG
TGTCCGATGATATTTCGGTACCTGGAGTACGACAATCAGTTCATTGGACA
CTTGCAGCTAACCCTGGATAGTACAAATACGGAGAACGTTGTGCGCGTTG
AACTTTCCCAGCGTGGCAGAAACACCCCGTCGACTCCGGGCACTCTTAAC
TTCTTGGAGGATGAGGATTCGCTGAGGCATCGCTTGACTAACAATGAGCC
CATCAACTACAGAATTGACTTTCCAACGCCGGGCGTGGTGCCCAAACTCA
CAAAGGTTACGGTTAATGGAAAAGTTGCGTGCGAGGCTGTGCCTTTTGGA
GCTCCTAGCACAAGGCTATCTTTGTCGCGAACTCTGCGAACTTCTGTGCC
TTTGGCAGCTATACCGCCGTCTCAGCGGACTGATCACCAATGGCCCCAGG
CCCCTCAGACCAACTACACTGTATATGAGGAGGAGGAGGAAGAGGAGCCA
GTTCAAAGACGCCGCCCACAACAGCGTCCTTCGAGGCCGCGTCCACAACA
GGCGCCGTCAAGACCACGGCTGCAACCCGTGCCTCAATTGCCACAAGAAC
CAGAGTTCCAGACGTCAGCCAGACCTTCAGTTCATCCGTCGAATACGCCC
GCGCAAGCATCCAAGTTCTATCCCCAGACAATTGGTCAACTGAGCGGAAT
CTGTGGGCGTGAAAAGGTCATCCAGACACCCTTTATCCACAACGGAATTG
AAGTGGAGCGGGGTCAGCTGCCCTGGATGGCCGCTCTTTTCGAGCACGTT
GGCAGGGACTATAACTTTTTGTGCGGCGGAACGCTGATCTCGGCCAGAAC
AGTGATCTCGGCTGCCCACTGCTTCCGCTTTGGCAGTCGGAATTTGCCGG
GCGAGCGGACTATTGTTTCGCTGGGGCGTAACTCCTTGGATCTTTTTTCG
TCGGGAGCTACACTAGGTGTAGCGCGACTATTAATCCACGAACAGTACAA
TCCCAATGTATACACCGATGCGGATTTAGCACTGCTCCAGTTGTCTAATC
ACGTTGATATTGGCGATTACATCAAGCCCATCTGTTTGTGGAACGAGAAC
TTTTTGCTCGAACTGCCCTCGGGTCACAAGTCCTATGTGGCTGGTTGGGG
TGAGGATGAAAAGGGGAACCGAAACACGCGACTGGCCAAGATGACAGACA
CGGACATCATCACCCAGTGGGAATGTCGTGGAAATCTGTCCGAGGAGAAC
GCCAAGTTTATCACCTCGCACACGATCTGTGCCAGCAATGCCCAGGCGTC
CGGTCCCTGCAGCGGAGATTCCGGTGGTGGACTGATGCTCCAGGAGCAGG
ACATCTGGATGCTGCGCGGCGTCGTCTCAGCCGGACAGCGAATGACCAAC
AGATGCAATCTGACGCTGCCTGTCATCTATACGGATGTGGCCAAGCACAT
CGAGTGGCTGCTCAGTAGCATGTGGTTTGCAAGCTTTCTAGACCAT

BO09970.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9649-RA 1515 CG9649-PA 1..1512 17..1528 7560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9649-RA 1713 CG9649-RA 136..1652 12..1528 7570 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14216008..14216719 1107..396 3560 100 Minus
3R 32079331 3R 14215520..14215940 1528..1108 2105 100 Minus
3R 32079331 3R 14217530..14217747 229..12 1075 99.5 Minus
3R 32079331 3R 14216914..14217080 395..229 835 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:26:00 has no hits.

BO09970.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:05 Download gff for BO09970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9649-RA 1..1515 17..1531 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:53 Download gff for BO09970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9649-RA 116..1645 4..1536 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:45 Download gff for BO09970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9649-RA 141..1652 17..1530 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:05 Download gff for BO09970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9649-RA 116..1645 4..1536 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:20 Download gff for BO09970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9649-RA 141..1652 17..1530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:20 Download gff for BO09970.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14215517..14215940 1108..1530 99 <- Minus
3R 14216008..14216719 396..1107 100 <- Minus
3R 14216914..14217079 230..395 100 <- Minus
3R 14217530..14217742 17..229 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:45 Download gff for BO09970.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10041239..10041662 1108..1530 99 <- Minus
arm_3R 10041730..10042441 396..1107 100 <- Minus
arm_3R 10042636..10042801 230..395 100 <- Minus
arm_3R 10043252..10043464 17..229 100   Minus

BO09970.pep Sequence

Translation from 16 to 1546

> BO09970.pep
MRQLQLLGFLIAILQISYISAQNLPYIQCPMIFRYLEYDNQFIGHLQLTL
DSTNTENVVRVELSQRGRNTPSTPGTLNFLEDEDSLRHRLTNNEPINYRI
DFPTPGVVPKLTKVTVNGKVACEAVPFGAPSTRLSLSRTLRTSVPLAAIP
PSQRTDHQWPQAPQTNYTVYEEEEEEEPVQRRRPQQRPSRPRPQQAPSRP
RLQPVPQLPQEPEFQTSARPSVHPSNTPAQASKFYPQTIGQLSGICGREK
VIQTPFIHNGIEVERGQLPWMAALFEHVGRDYNFLCGGTLISARTVISAA
HCFRFGSRNLPGERTIVSLGRNSLDLFSSGATLGVARLLIHEQYNPNVYT
DADLALLQLSNHVDIGDYIKPICLWNENFLLELPSGHKSYVAGWGEDEKG
NRNTRLAKMTDTDIITQWECRGNLSEENAKFITSHTICASNAQASGPCSG
DSGGGLMLQEQDIWMLRGVVSAGQRMTNRCNLTLPVIYTDVAKHIEWLLS
SMWFASFLDH

BO09970.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9649-PA 504 CG9649-PA 1..504 1..504 2671 100 Plus
CG31326-PA 520 CG31326-PA 5..519 5..503 824 37.4 Plus
Sp212-PC 516 CG33329-PC 3..511 7..498 579 32.3 Plus
CG9631-PA 439 CG9631-PA 6..437 4..502 457 29.6 Plus
gd-PD 531 CG1505-PD 2..526 3..498 392 25.6 Plus