Clone Sequence Records
BO09970.3prime Sequence
902 bp (894 high quality bases) assembled on 2006-04-19
> BO09970.3prime
ATGGTCTAGAAAGCTTGCAAACCACATGCTACTGAGCAGCCACTCGATGT
GCTTGGCCACATCCGTATAGATGACAGGCAGCGTCAGATTGCATCTGTTG
GTCATTCGCTGTCCGGCTGAGACGACGCCGCGCAGCATCCAGATGTCCTG
CTCCTGGAGCATCAGTCCACCACCGGAATCTCCGCTGCAGGGACCGGACG
CCTGGGCATTGCTGGCACAGATCGTGTGCGAGGTGATAAACTTGGCGTTC
TCCTCGGACAGATTTCCACGACATTCCCACTGGGTGATGATGTCCGTGTC
TGTCATCTTGGCCAGTCGCGTGTTTCGGTTCCCCTTTTCATCCTCACCCC
AACCAGCCACATAGGACTTGTGACCCGAGGGCAGTTCGAGCAAAAAGTTC
TCGTTCCACAAACAGATGGGCTTGATGTAATCGCCAATATCAACGTGATT
AGACAACTGGAGCAGTGCTAAATCCGCATCGGTGTATACATTGGGATTGT
ACTGTTCGTGGATTAATAGTCGCGCTACACCTAGTGTAGCTCCCGACGAA
AAAAGATCCAAGGAGTTACGCCCCAGCGAAACAATAGTCCGCTCGCCCGG
CAAATTCCGACTGCCAAAGCGGAAGCAGTGGGCAGCCGAGATCACTGTTC
TGGCCGAGATCAGCGTTCCGCCGCACAAAAAGTTATAGTCCCTGCCAACG
TGCTCGAAAAGAGCGGCCATCCAGGGCAGCTGACCCCGCTCCACTTCAAT
TCCGTTGTGGATAAAGGGTGTCTGGATGACCTTTTCACGCCCACAGATTC
CGCTCAGTTGACCAATTGTCTGGGGATAGAACTTGGATGCTTGCGCGGGC
GTATTCGACGGATGAACTGAAGGTCTGGCTGACGTCTGGAACTCTGGGTT
CT
BO09970.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9649-PA | 1515 | CG9649-RA | 634..1512 | 897..19 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:59:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9649-RA | 1713 | CG9649-RA | 774..1652 | 897..19 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14216008..14216465 | 440..897 | 2290 | 100 | Plus |
3R | 32079331 | 3R | 14215520..14215940 | 19..439 | 2105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 15:59:20 has no hits.
BO09970.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:32 Download gff for
BO09970.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9649-PA | 630..1515 | 16..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:55 Download gff for
BO09970.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9649-PA | 630..1515 | 16..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:18:53 Download gff for
BO09970.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9649-RA | 770..1661 | 11..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:05:26 Download gff for
BO09970.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9649-RA | 770..1661 | 11..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:05:26 Download gff for
BO09970.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14215511..14215940 | 11..439 | 99 | <- | Plus |
3R | 14216008..14216469 | 440..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:18:53 Download gff for
BO09970.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10041233..10041662 | 11..439 | 99 | <- | Plus |
arm_3R | 10041730..10042191 | 440..902 | 99 | | Plus |
BO09970.5prime Sequence
890 bp (792 high quality bases) assembled on 2006-04-19
> BO09970.5prime
GAAGTTATCAGTCGACATGCGCCAACTGCAGTTGCTTGGTTTTCTGATCG
CCATACTGCAAATCAGCTATATAAGTGCCCAAAACTTGCCATATATCCAG
TGTCCGATGATATTTCGGTACCTGGAGTACGACAATCAGTTCATTGGACA
CTTGCAGCTAACCCTGGATAGTACAAATACGGAGAACGTTGTGCGCGTTG
AACTTTCCCAGCGTGGCAGAAACACCCCGTCGACTCCGGGCACTCTTAAC
TTCTTGGAGGATGAGGATTCGCTGAGGCATCGCTTGACTAACAATGAGCC
CATCAACTACAGAATTGACTTTCCAACGCCGGGCGTGGTGCCCAAACTCA
CAAAGGTTACGGTTAATGGAAAAGTTGCGTGCGAGGCTGTGCCTTTTGGA
GCTCCTAGCACAAGGCTATCTTTGTCGCGAACTCTGCGAACTTCTGTGCC
TTTGGCAGCTATACCGCCGTCTCAGCGGACTGATCACCAATGGCCCCAGG
CCCCTCAGACCAACTACACTGTATATGAGGAGGAGGAGGAAGAGGAGCCA
GTTCAAAGACGCCGCCCACAACAGCGTCCTTCGAGGCCGCGTCCACAACA
GGCGCCGTCAAGACCACGGCTGCAACCCGTGCCTCAATTGCCACAAGAAC
CAGAGTTCCAGACGTCAGCCAGACCTTCAGTTCATCCGTCGAATACGCCC
GCGCAAGCATCCAAGTTCTATCCCCAGACAATTGGTCAACTGAGCGGAAT
CTGTGGGCGTGAAAAGGTCATCCAGACACCCTTTATCCACAACGGAATTG
AAGTGGAGCGGGGTCAGCTGCCCTGGATGGCCGCTCTTTTCGAGCACGTT
GGCAGGGACTATAACTTTTTGTGCGGCGGAACGCTGATCT
BO09970.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9649-PA | 1515 | CG9649-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:13:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9649-RA | 1713 | CG9649-RA | 136..1014 | 12..890 | 4380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14216225..14216719 | 890..396 | 2475 | 100 | Minus |
3R | 32079331 | 3R | 14217530..14217747 | 229..12 | 1075 | 99.5 | Minus |
3R | 32079331 | 3R | 14216914..14217080 | 395..229 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:13:54 has no hits.
BO09970.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:33 Download gff for
BO09970.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9649-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:35:56 Download gff for
BO09970.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9649-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:44 Download gff for
BO09970.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9649-RA | 132..1014 | 4..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:42:11 Download gff for
BO09970.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9649-RA | 132..1014 | 4..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:42:11 Download gff for
BO09970.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14216225..14216719 | 396..890 | 100 | <- | Minus |
3R | 14216914..14217079 | 230..395 | 100 | <- | Minus |
3R | 14217530..14217751 | 4..229 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:44 Download gff for
BO09970.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10043252..10043473 | 4..229 | 97 | | Minus |
arm_3R | 10042636..10042801 | 230..395 | 100 | <- | Minus |
arm_3R | 10041947..10042441 | 396..890 | 100 | <- | Minus |
BO09970.complete Sequence
1546 bp (1546 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631626
> BO09970.complete
GAAGTTATCAGTCGACATGCGCCAACTGCAGTTGCTTGGTTTTCTGATCG
CCATACTGCAAATCAGCTATATAAGTGCCCAAAACTTGCCATATATCCAG
TGTCCGATGATATTTCGGTACCTGGAGTACGACAATCAGTTCATTGGACA
CTTGCAGCTAACCCTGGATAGTACAAATACGGAGAACGTTGTGCGCGTTG
AACTTTCCCAGCGTGGCAGAAACACCCCGTCGACTCCGGGCACTCTTAAC
TTCTTGGAGGATGAGGATTCGCTGAGGCATCGCTTGACTAACAATGAGCC
CATCAACTACAGAATTGACTTTCCAACGCCGGGCGTGGTGCCCAAACTCA
CAAAGGTTACGGTTAATGGAAAAGTTGCGTGCGAGGCTGTGCCTTTTGGA
GCTCCTAGCACAAGGCTATCTTTGTCGCGAACTCTGCGAACTTCTGTGCC
TTTGGCAGCTATACCGCCGTCTCAGCGGACTGATCACCAATGGCCCCAGG
CCCCTCAGACCAACTACACTGTATATGAGGAGGAGGAGGAAGAGGAGCCA
GTTCAAAGACGCCGCCCACAACAGCGTCCTTCGAGGCCGCGTCCACAACA
GGCGCCGTCAAGACCACGGCTGCAACCCGTGCCTCAATTGCCACAAGAAC
CAGAGTTCCAGACGTCAGCCAGACCTTCAGTTCATCCGTCGAATACGCCC
GCGCAAGCATCCAAGTTCTATCCCCAGACAATTGGTCAACTGAGCGGAAT
CTGTGGGCGTGAAAAGGTCATCCAGACACCCTTTATCCACAACGGAATTG
AAGTGGAGCGGGGTCAGCTGCCCTGGATGGCCGCTCTTTTCGAGCACGTT
GGCAGGGACTATAACTTTTTGTGCGGCGGAACGCTGATCTCGGCCAGAAC
AGTGATCTCGGCTGCCCACTGCTTCCGCTTTGGCAGTCGGAATTTGCCGG
GCGAGCGGACTATTGTTTCGCTGGGGCGTAACTCCTTGGATCTTTTTTCG
TCGGGAGCTACACTAGGTGTAGCGCGACTATTAATCCACGAACAGTACAA
TCCCAATGTATACACCGATGCGGATTTAGCACTGCTCCAGTTGTCTAATC
ACGTTGATATTGGCGATTACATCAAGCCCATCTGTTTGTGGAACGAGAAC
TTTTTGCTCGAACTGCCCTCGGGTCACAAGTCCTATGTGGCTGGTTGGGG
TGAGGATGAAAAGGGGAACCGAAACACGCGACTGGCCAAGATGACAGACA
CGGACATCATCACCCAGTGGGAATGTCGTGGAAATCTGTCCGAGGAGAAC
GCCAAGTTTATCACCTCGCACACGATCTGTGCCAGCAATGCCCAGGCGTC
CGGTCCCTGCAGCGGAGATTCCGGTGGTGGACTGATGCTCCAGGAGCAGG
ACATCTGGATGCTGCGCGGCGTCGTCTCAGCCGGACAGCGAATGACCAAC
AGATGCAATCTGACGCTGCCTGTCATCTATACGGATGTGGCCAAGCACAT
CGAGTGGCTGCTCAGTAGCATGTGGTTTGCAAGCTTTCTAGACCAT
BO09970.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9649-RA | 1515 | CG9649-PA | 1..1512 | 17..1528 | 7560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9649-RA | 1713 | CG9649-RA | 136..1652 | 12..1528 | 7570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14216008..14216719 | 1107..396 | 3560 | 100 | Minus |
3R | 32079331 | 3R | 14215520..14215940 | 1528..1108 | 2105 | 100 | Minus |
3R | 32079331 | 3R | 14217530..14217747 | 229..12 | 1075 | 99.5 | Minus |
3R | 32079331 | 3R | 14216914..14217080 | 395..229 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:26:00 has no hits.
BO09970.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:05 Download gff for
BO09970.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9649-RA | 1..1515 | 17..1531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:53 Download gff for
BO09970.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9649-RA | 116..1645 | 4..1536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:45 Download gff for
BO09970.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9649-RA | 141..1652 | 17..1530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:05 Download gff for
BO09970.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9649-RA | 116..1645 | 4..1536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:20 Download gff for
BO09970.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9649-RA | 141..1652 | 17..1530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:20 Download gff for
BO09970.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14215517..14215940 | 1108..1530 | 99 | <- | Minus |
3R | 14216008..14216719 | 396..1107 | 100 | <- | Minus |
3R | 14216914..14217079 | 230..395 | 100 | <- | Minus |
3R | 14217530..14217742 | 17..229 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:45 Download gff for
BO09970.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10041239..10041662 | 1108..1530 | 99 | <- | Minus |
arm_3R | 10041730..10042441 | 396..1107 | 100 | <- | Minus |
arm_3R | 10042636..10042801 | 230..395 | 100 | <- | Minus |
arm_3R | 10043252..10043464 | 17..229 | 100 | | Minus |
BO09970.pep Sequence
Translation from 16 to 1546
> BO09970.pep
MRQLQLLGFLIAILQISYISAQNLPYIQCPMIFRYLEYDNQFIGHLQLTL
DSTNTENVVRVELSQRGRNTPSTPGTLNFLEDEDSLRHRLTNNEPINYRI
DFPTPGVVPKLTKVTVNGKVACEAVPFGAPSTRLSLSRTLRTSVPLAAIP
PSQRTDHQWPQAPQTNYTVYEEEEEEEPVQRRRPQQRPSRPRPQQAPSRP
RLQPVPQLPQEPEFQTSARPSVHPSNTPAQASKFYPQTIGQLSGICGREK
VIQTPFIHNGIEVERGQLPWMAALFEHVGRDYNFLCGGTLISARTVISAA
HCFRFGSRNLPGERTIVSLGRNSLDLFSSGATLGVARLLIHEQYNPNVYT
DADLALLQLSNHVDIGDYIKPICLWNENFLLELPSGHKSYVAGWGEDEKG
NRNTRLAKMTDTDIITQWECRGNLSEENAKFITSHTICASNAQASGPCSG
DSGGGLMLQEQDIWMLRGVVSAGQRMTNRCNLTLPVIYTDVAKHIEWLLS
SMWFASFLDH
BO09970.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9649-PA | 504 | CG9649-PA | 1..504 | 1..504 | 2671 | 100 | Plus |
CG31326-PA | 520 | CG31326-PA | 5..519 | 5..503 | 824 | 37.4 | Plus |
Sp212-PC | 516 | CG33329-PC | 3..511 | 7..498 | 579 | 32.3 | Plus |
CG9631-PA | 439 | CG9631-PA | 6..437 | 4..502 | 457 | 29.6 | Plus |
gd-PD | 531 | CG1505-PD | 2..526 | 3..498 | 392 | 25.6 | Plus |