Clone BO09972 Report

Search the DGRC for BO09972

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:99
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG4945-RA
Protein status:BO09972.pep: validated full length
Sequenced Size:1687

Clone Sequence Records

BO09972.3prime Sequence

916 bp (832 high quality bases) assembled on 2006-04-19

> BO09972.3prime
ATGGTCTAGAAAGCTTGCTCTGCGCTGTCGCCGGGCGATGTTGTGGCTGC
TGGAGCTGGTGGTGCGATCGTAGGCGGTGTCCTTCATCAGCGAGGGACTT
CTGCTGGCCGCCACCGCCATCTCGCTGACATCGACCGATCCGTAGGCACT
GTCTTTAACTTGAGAAGCATATGGGAGATTAGCGTAGCTCGAGTGCCGGG
CATCGCGAAGCTCTAGACGATTCAATTCGGTCTCCATGGACGTGTACATA
GTCAGGTTGCTGGCCAGCAGATCCTGCCGCGAGCCCAGTGTCATTAGGCT
GTCCGCGTTGTTCAGCGTGGACGCTGTGGTGCTGTAGTTGGAGGCGGGAC
TGGCCGACTTGGAATACGCCATGGCCACCTGACCCATCTCGCTGGGTCCC
TGCTGCAGTGCACCCGTGCGTGGATCGAAGTGCTTTTGGGTGGCGTCCTT
CAGGGTGCTGTTAATCTCCTTTGCGCTCTCCGCCGGACTTGTGGGCTTGC
GCAGCGACGATATATGCCCGGGTAGCGGCTCGCGCGAGACCGACGAGGAT
GGGGATGCCGAATTGGTCTCCTCGTTCTCCTCCTCGTCCTCCTCCGTAAT
GATGGACGACTCTATCCAGTCTTTGATGCGGTTCTTCTTCTGCTGCCGGT
CCACATTGGTCTCGATACCGCAGTCGGCCAGGGTGTAGAGCAGCTTGTTC
TTCTCATCCGGGCTGCTGTGGAAGGAGTACATGGAGGGGCACAGTTCGTC
CGTCTCGTACTCGGCCATCTCCTTCTGGGCGGTCTTGGCCAGCCATCGGT
CGTCTAGGAACTTGGTAACATCGGCCAGGCTCTTGGGTCGATTGNAGATC
CTGGCAAAGAAGCGCTTGAACATCCGCTGCGCATTTCGAGTGAGCAGCTT
GAAAAGTCGTGGAGTT

BO09972.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4945-PA 1656 CG4945-RA 787..1653 885..19 4316 99.8 Minus
CG4945-PB 1734 CG4945-RB 787..1459 885..213 3346 99.8 Minus
CG4945-PC 1734 CG4945-RC 787..1459 885..213 3346 99.8 Minus
CG4945-PA 1656 CG4945-RA 756..782 916..890 135 100 Minus
CG4945-PB 1734 CG4945-RB 756..782 916..890 135 100 Minus
CG4945-PC 1734 CG4945-RC 756..782 916..890 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4945-RA 2146 CG4945-RA 1178..2075 916..19 4434 99.7 Minus
CG4945-RD 1993 CG4945-RD 1079..1782 916..213 3464 99.6 Minus
CG4945-RC 2622 CG4945-RC 1327..2030 916..213 3464 99.6 Minus
CG4945-RD 1993 CG4945-RD 1781..1922 160..19 710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16569157..16569528 584..213 1860 100 Minus
2R 25286936 2R 16568711..16569045 916..582 1604 98.5 Minus
2R 25286936 2R 16569854..16570049 214..19 980 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:31:35 has no hits.

BO09972.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:36 Download gff for BO09972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-PA 756..1656 18..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:36:00 Download gff for BO09972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-PA 756..1656 18..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:31:31 Download gff for BO09972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-RA 1178..2086 6..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:07 Download gff for BO09972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-RA 1178..2086 6..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:07 Download gff for BO09972.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16568711..16569044 583..916 99 -> Minus
2R 16569159..16569528 213..582 100 -> Minus
2R 16569856..16570060 6..212 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:31:31 Download gff for BO09972.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12456216..12456549 583..916 99 -> Minus
arm_2R 12456664..12457033 213..582 100 -> Minus
arm_2R 12457361..12457565 6..212 97   Minus

BO09972.5prime Sequence

918 bp (840 high quality bases) assembled on 2006-04-19

> BO09972.5prime
GAAGTTATCAGTCGACATGTCTAAGAAACCACGTGGAAACATTCACAAGA
TACGAGAGTTCGAATTGGAGAAGATCCAGCTTGTGGACGAGTTTGATATC
ATACAGATCGTTGGCGAAGGATGGTTCGGGAAGATTCTACTGGTGGAGCA
TCGGGGATCACAGACGGAGATGGTCCTGAAAGCTGTACCCAAACCATATG
TGACATTGCGTGACTTTTACCGGGAATTCCACTATGGACTCCACTTGGGA
GTCCATCGACACATTGTGACCACCTACGACGTGGCCTTTGAGACAGCGGG
CTTCTACGTTTTCACCCAGGAGTATGCTCCACTAGGGGATCTCACATCGA
ACGTGACCGATTCGGGTGTGGGCGAAGTTTACAGCAAGCGGGTGGCGAAA
CAATTGGCCTCGGCCATTGACTACATGCATTCAAAAGACATAGTGCATCG
GGACATAAAGCTAGACAATGTGCTCATCTATCGCTCGGACTTCCAGCGCA
TCAAGCTCTGCGATTTCGGCGAGTCCTTTCCCACAGGCTCCACTGTGGAG
CGACGCAACGAGTGGTTGCCCTACAGTCCGCCAGAAGTATTAGAAATTAA
GCCCGAGGGCAGTTACAAAGCCGATCCCAGCCACGATGTTTGGCAGTTTG
GCATTGTGATTTTTGTGTGTCTAACTGGCTGTTTGCCCTGGCAGAAGGCT
GCCTCCGATGATCCGCGCTATGTGCGCTATCTGGCCTGGCAGGGCGGACT
TATGATGATGCCGCTGCGGCGAACTCCACGACTTTTCAAGCTGCTCACCT
CGAATGCGCAGCGGATGTTCAAGCGCTTCTTTGCCAGGATCTCCNATCGA
CCCAAGAGCCTGGCCGATGTTACCAAGTTCCTAGACGACCGATGGCTGGG
CAAAGACCGCCCAGAAGG

BO09972.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4945-PB 1734 CG4945-RB 1..883 17..899 4396 99.8 Plus
CG4945-PC 1734 CG4945-RC 1..883 17..899 4396 99.8 Plus
CG4945-PA 1656 CG4945-RA 1..883 17..899 4396 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4945-RD 1993 CG4945-RD 324..1224 17..918 4459 99.7 Plus
CG4945-RA 2146 CG4945-RA 423..1323 17..918 4459 99.7 Plus
CG4945-RC 2622 CG4945-RC 572..1472 17..918 4459 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16568558..16568856 619..918 1424 99 Plus
2R 25286936 2R 16567783..16568047 72..336 1325 100 Plus
2R 25286936 2R 16568310..16568492 436..618 915 100 Plus
2R 25286936 2R 16568107..16568208 334..435 510 100 Plus
2R 25286936 2R 16566936..16566992 17..73 285 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:36:02 has no hits.

BO09972.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:37 Download gff for BO09972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-PB 1..901 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:36:02 Download gff for BO09972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-PA 1..901 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:38:13 Download gff for BO09972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-RC 564..1472 9..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:09:06 Download gff for BO09972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-RC 564..1472 9..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:09:06 Download gff for BO09972.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16566928..16566992 9..73 95 -> Plus
2R 16567785..16568046 74..335 100 -> Plus
2R 16568109..16568208 336..435 100 -> Plus
2R 16568310..16568492 436..618 100 -> Plus
2R 16568558..16568856 619..918 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:38:13 Download gff for BO09972.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12454433..12454497 9..73 95 -> Plus
arm_2R 12455290..12455551 74..335 100 -> Plus
arm_2R 12455614..12455713 336..435 100 -> Plus
arm_2R 12455815..12455997 436..618 100 -> Plus
arm_2R 12456063..12456361 619..918 99   Plus

BO09972.complete Sequence

1687 bp assembled on 2006-10-10

GenBank Submission: FJ631627

> BO09972.complete
GAAGTTATCAGTCGACATGTCTAAGAAACCACGTGGAAACATTCACAAGA
TACGAGAGTTCGAATTGGAGAAGATCCAGCTTGTGGACGAGTTTGATATC
ATACAGATCGTTGGCGAAGGATGGTTCGGGAAGATTCTACTGGTGGAGCA
TCGGGGATCACAGACGGAGATGGTCCTGAAAGCTGTACCCAAACCATATG
TGACATTGCGTGACTTTTACCGGGAATTCCACTATGGACTCCACTTGGGA
GTCCATCGACACATTGTGACCACCTACGACGTGGCCTTTGAGACAGCGGG
CTTCTACGTTTTCACCCAGGAGTATGCTCCACTAGGGGATCTCACATCGA
ACGTGACCGATTCGGGTGTGGGCGAAGTTTACAGCAAGCGGGTGGCGAAA
CAATTGGCCTCGGCCATTGACTACATGCATTCAAAAGACATAGTGCATCG
GGACATAAAGCTAGACAATGTGCTCATCTATCGCTCGGACTTCCAGCGCA
TCAAGCTCTGCGATTTCGGCGAGTCCTTTCCCACAGGCTCCACTGTGGAG
CGACGCAACGAGTGGTTGCCCTACAGTCCGCCAGAAGTATTAGAAATTAA
GCCCGAGGGCAGTTACAAAGCCGATCCCAGCCACGATGTTTGGCAGTTTG
GCATTGTGATTTTTGTGTGTCTAACTGGCTGTTTGCCCTGGCAGAAGGCT
GCCTCCGATGATCCGCGCTATGTGCGCTATCTGGCCTGGCAGGGCGGACT
TATGATGATGCCGCTGCGGCGAACTCCACGACTTTTCAAGCTGCTCACCT
CGAATGCGCAGCGGATGTTCAAGCGCTTCTTTGCCAGGATCTCCAATCGA
CCCAAGAGCCTGGCCGATGTTACCAAGTTCCTAGACGACCGATGGCTGGC
CAAGACCGCCCAGAAGGAGATGGCCGAGTACGAGACGGACGAACTGTGCC
CCTCCATGTACTCCTTCCACAGCAGCCCGGATGAGAAGAACAAGCTGCTC
TACACCCTGGCCGACTGCGGTATCGAGACCAATGTGGACCGGCAGCAGAA
GAAGAACCGCATCAAAGACTGGATAGAGTCGTCCATCATTACGGAGGAGG
ACGAGGAGGAGAACGAGGAGACCAATTCGGCATCCCCATCCTCGTCGGTC
TCGCGCGAGCCGCTACCCGGGCATATATCGTCGCTGCGCAAGCCCACAAG
TCCGGCGGAGAGCGCAAAGGAGATTAACAGCACCCTGAAGGACGCCACCC
AAAAGCACTTCGATCCACGCACGGGTGCACTGCAGCAGGGACCCAGCGAG
ATGGGTCAGGTGGCCATGGCGTATTCCAAGTCGGCCAGTCCCGCCTCCAA
CTACAGCACCACAGCGTCCACGCTGAACAACGCGGACAGCCTAATGACAC
TGGGCTCGCGGCAGGATCTGCTGGCCAGCAACCTGACTATGTACACGTCC
ATGGAGACCGAATTGAATCGTCTAGAGCTTCGCGATGCCCGGCACTCGAG
CTACGCTAATCTCCCATATGCTTCTCAAGTTAAAGACAGTGCCTACGGAT
CGGTCGATGTCAGCGAGATGGCGGTGGCGGCCAGCAGAAGTCCCTCGCTG
ATGAAGGACACCGCCTACGATCGCACCACCAGCTCCAGCAGCCACAACAT
CGCCCGGCGACAGCGCAGAGCAAGCTTTCTAGACCAT

BO09972.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4945-RA 1656 CG4945-PA 1..1653 17..1669 8265 100 Plus
CG4945-RD 1602 CG4945-PD 1..1459 17..1475 7295 100 Plus
CG4945-RC 1734 CG4945-PC 1..1459 17..1475 7295 100 Plus
CG4945-RD 1602 CG4945-PD 1458..1599 1528..1669 710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4945-RA 2146 CG4945-RA 423..2075 17..1669 8265 100 Plus
CG4945-RD 1993 CG4945-RD 324..1782 17..1475 7295 100 Plus
CG4945-RC 2622 CG4945-RC 572..2030 17..1475 7295 100 Plus
CG4945-RD 1993 CG4945-RD 1781..1922 1528..1669 710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16568558..16569045 619..1106 2440 100 Plus
2R 25286936 2R 16569157..16569528 1104..1475 1860 100 Plus
2R 25286936 2R 16567783..16568047 72..336 1325 100 Plus
2R 25286936 2R 16569854..16570049 1474..1669 980 100 Plus
2R 25286936 2R 16568310..16568492 436..618 915 100 Plus
2R 25286936 2R 16568107..16568208 334..435 510 100 Plus
2R 25286936 2R 16566936..16566992 17..73 285 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:18:29 has no hits.

BO09972.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:30 Download gff for BO09972.complete
Subject Subject Range Query Range Percent Splice Strand
CG4945-RA 1..1656 17..1670 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:41 Download gff for BO09972.complete
Subject Subject Range Query Range Percent Splice Strand
CG4945-RA 391..2062 9..1682 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:46 Download gff for BO09972.complete
Subject Subject Range Query Range Percent Splice Strand
CG4945-RA 423..2075 17..1671 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:31 Download gff for BO09972.complete
Subject Subject Range Query Range Percent Splice Strand
CG4945-RA 391..2062 9..1682 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:11 Download gff for BO09972.complete
Subject Subject Range Query Range Percent Splice Strand
CG4945-RA 423..2075 17..1671 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:11 Download gff for BO09972.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16568310..16568492 436..618 100 -> Plus
2R 16567785..16568046 74..335 100 -> Plus
2R 16568109..16568208 336..435 100 -> Plus
2R 16566936..16566992 17..73 100 -> Plus
2R 16568558..16569044 619..1105 100 -> Plus
2R 16569159..16569528 1106..1475 100 -> Plus
2R 16569856..16570049 1476..1671 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:46 Download gff for BO09972.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12455815..12455997 436..618 100 -> Plus
arm_2R 12457361..12457554 1476..1671 98   Plus
arm_2R 12455290..12455551 74..335 100 -> Plus
arm_2R 12456664..12457033 1106..1475 100 -> Plus
arm_2R 12455614..12455713 336..435 100 -> Plus
arm_2R 12454441..12454497 17..73 100 -> Plus
arm_2R 12456063..12456549 619..1105 100 -> Plus

BO09972.pep Sequence

Translation from 16 to 1687

> BO09972.pep
MSKKPRGNIHKIREFELEKIQLVDEFDIIQIVGEGWFGKILLVEHRGSQT
EMVLKAVPKPYVTLRDFYREFHYGLHLGVHRHIVTTYDVAFETAGFYVFT
QEYAPLGDLTSNVTDSGVGEVYSKRVAKQLASAIDYMHSKDIVHRDIKLD
NVLIYRSDFQRIKLCDFGESFPTGSTVERRNEWLPYSPPEVLEIKPEGSY
KADPSHDVWQFGIVIFVCLTGCLPWQKAASDDPRYVRYLAWQGGLMMMPL
RRTPRLFKLLTSNAQRMFKRFFARISNRPKSLADVTKFLDDRWLAKTAQK
EMAEYETDELCPSMYSFHSSPDEKNKLLYTLADCGIETNVDRQQKKNRIK
DWIESSIITEEDEEENEETNSASPSSSVSREPLPGHISSLRKPTSPAESA
KEINSTLKDATQKHFDPRTGALQQGPSEMGQVAMAYSKSASPASNYSTTA
STLNNADSLMTLGSRQDLLASNLTMYTSMETELNRLELRDARHSSYANLP
YASQVKDSAYGSVDVSEMAVAASRSPSLMKDTAYDRTTSSSSHNIARRQR
RASFLDH

BO09972.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4945-PA 551 CG4945-PA 1..551 1..551 2859 100 Plus
CG4945-PD 533 CG4945-PD 1..533 1..551 2737 96.7 Plus
CG4945-PC 577 CG4945-PC 1..492 1..492 2542 99.2 Plus
CG4945-PB 577 CG4945-PB 1..492 1..492 2542 99.2 Plus
CG11221-PB 456 CG11221-PB 78..437 3..355 574 33 Plus