Clone Sequence Records
BO09972.3prime Sequence
916 bp (832 high quality bases) assembled on 2006-04-19
> BO09972.3prime
ATGGTCTAGAAAGCTTGCTCTGCGCTGTCGCCGGGCGATGTTGTGGCTGC
TGGAGCTGGTGGTGCGATCGTAGGCGGTGTCCTTCATCAGCGAGGGACTT
CTGCTGGCCGCCACCGCCATCTCGCTGACATCGACCGATCCGTAGGCACT
GTCTTTAACTTGAGAAGCATATGGGAGATTAGCGTAGCTCGAGTGCCGGG
CATCGCGAAGCTCTAGACGATTCAATTCGGTCTCCATGGACGTGTACATA
GTCAGGTTGCTGGCCAGCAGATCCTGCCGCGAGCCCAGTGTCATTAGGCT
GTCCGCGTTGTTCAGCGTGGACGCTGTGGTGCTGTAGTTGGAGGCGGGAC
TGGCCGACTTGGAATACGCCATGGCCACCTGACCCATCTCGCTGGGTCCC
TGCTGCAGTGCACCCGTGCGTGGATCGAAGTGCTTTTGGGTGGCGTCCTT
CAGGGTGCTGTTAATCTCCTTTGCGCTCTCCGCCGGACTTGTGGGCTTGC
GCAGCGACGATATATGCCCGGGTAGCGGCTCGCGCGAGACCGACGAGGAT
GGGGATGCCGAATTGGTCTCCTCGTTCTCCTCCTCGTCCTCCTCCGTAAT
GATGGACGACTCTATCCAGTCTTTGATGCGGTTCTTCTTCTGCTGCCGGT
CCACATTGGTCTCGATACCGCAGTCGGCCAGGGTGTAGAGCAGCTTGTTC
TTCTCATCCGGGCTGCTGTGGAAGGAGTACATGGAGGGGCACAGTTCGTC
CGTCTCGTACTCGGCCATCTCCTTCTGGGCGGTCTTGGCCAGCCATCGGT
CGTCTAGGAACTTGGTAACATCGGCCAGGCTCTTGGGTCGATTGNAGATC
CTGGCAAAGAAGCGCTTGAACATCCGCTGCGCATTTCGAGTGAGCAGCTT
GAAAAGTCGTGGAGTT
BO09972.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4945-PA | 1656 | CG4945-RA | 787..1653 | 885..19 | 4316 | 99.8 | Minus |
CG4945-PB | 1734 | CG4945-RB | 787..1459 | 885..213 | 3346 | 99.8 | Minus |
CG4945-PC | 1734 | CG4945-RC | 787..1459 | 885..213 | 3346 | 99.8 | Minus |
CG4945-PA | 1656 | CG4945-RA | 756..782 | 916..890 | 135 | 100 | Minus |
CG4945-PB | 1734 | CG4945-RB | 756..782 | 916..890 | 135 | 100 | Minus |
CG4945-PC | 1734 | CG4945-RC | 756..782 | 916..890 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4945-RA | 2146 | CG4945-RA | 1178..2075 | 916..19 | 4434 | 99.7 | Minus |
CG4945-RD | 1993 | CG4945-RD | 1079..1782 | 916..213 | 3464 | 99.6 | Minus |
CG4945-RC | 2622 | CG4945-RC | 1327..2030 | 916..213 | 3464 | 99.6 | Minus |
CG4945-RD | 1993 | CG4945-RD | 1781..1922 | 160..19 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16569157..16569528 | 584..213 | 1860 | 100 | Minus |
2R | 25286936 | 2R | 16568711..16569045 | 916..582 | 1604 | 98.5 | Minus |
2R | 25286936 | 2R | 16569854..16570049 | 214..19 | 980 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:31:35 has no hits.
BO09972.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:36 Download gff for
BO09972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4945-PA | 756..1656 | 18..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:36:00 Download gff for
BO09972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4945-PA | 756..1656 | 18..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:31:31 Download gff for
BO09972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4945-RA | 1178..2086 | 6..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:07 Download gff for
BO09972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4945-RA | 1178..2086 | 6..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:07 Download gff for
BO09972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16568711..16569044 | 583..916 | 99 | -> | Minus |
2R | 16569159..16569528 | 213..582 | 100 | -> | Minus |
2R | 16569856..16570060 | 6..212 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:31:31 Download gff for
BO09972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12456216..12456549 | 583..916 | 99 | -> | Minus |
arm_2R | 12456664..12457033 | 213..582 | 100 | -> | Minus |
arm_2R | 12457361..12457565 | 6..212 | 97 | | Minus |
BO09972.5prime Sequence
918 bp (840 high quality bases) assembled on 2006-04-19
> BO09972.5prime
GAAGTTATCAGTCGACATGTCTAAGAAACCACGTGGAAACATTCACAAGA
TACGAGAGTTCGAATTGGAGAAGATCCAGCTTGTGGACGAGTTTGATATC
ATACAGATCGTTGGCGAAGGATGGTTCGGGAAGATTCTACTGGTGGAGCA
TCGGGGATCACAGACGGAGATGGTCCTGAAAGCTGTACCCAAACCATATG
TGACATTGCGTGACTTTTACCGGGAATTCCACTATGGACTCCACTTGGGA
GTCCATCGACACATTGTGACCACCTACGACGTGGCCTTTGAGACAGCGGG
CTTCTACGTTTTCACCCAGGAGTATGCTCCACTAGGGGATCTCACATCGA
ACGTGACCGATTCGGGTGTGGGCGAAGTTTACAGCAAGCGGGTGGCGAAA
CAATTGGCCTCGGCCATTGACTACATGCATTCAAAAGACATAGTGCATCG
GGACATAAAGCTAGACAATGTGCTCATCTATCGCTCGGACTTCCAGCGCA
TCAAGCTCTGCGATTTCGGCGAGTCCTTTCCCACAGGCTCCACTGTGGAG
CGACGCAACGAGTGGTTGCCCTACAGTCCGCCAGAAGTATTAGAAATTAA
GCCCGAGGGCAGTTACAAAGCCGATCCCAGCCACGATGTTTGGCAGTTTG
GCATTGTGATTTTTGTGTGTCTAACTGGCTGTTTGCCCTGGCAGAAGGCT
GCCTCCGATGATCCGCGCTATGTGCGCTATCTGGCCTGGCAGGGCGGACT
TATGATGATGCCGCTGCGGCGAACTCCACGACTTTTCAAGCTGCTCACCT
CGAATGCGCAGCGGATGTTCAAGCGCTTCTTTGCCAGGATCTCCNATCGA
CCCAAGAGCCTGGCCGATGTTACCAAGTTCCTAGACGACCGATGGCTGGG
CAAAGACCGCCCAGAAGG
BO09972.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4945-PB | 1734 | CG4945-RB | 1..883 | 17..899 | 4396 | 99.8 | Plus |
CG4945-PC | 1734 | CG4945-RC | 1..883 | 17..899 | 4396 | 99.8 | Plus |
CG4945-PA | 1656 | CG4945-RA | 1..883 | 17..899 | 4396 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4945-RD | 1993 | CG4945-RD | 324..1224 | 17..918 | 4459 | 99.7 | Plus |
CG4945-RA | 2146 | CG4945-RA | 423..1323 | 17..918 | 4459 | 99.7 | Plus |
CG4945-RC | 2622 | CG4945-RC | 572..1472 | 17..918 | 4459 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:35:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16568558..16568856 | 619..918 | 1424 | 99 | Plus |
2R | 25286936 | 2R | 16567783..16568047 | 72..336 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 16568310..16568492 | 436..618 | 915 | 100 | Plus |
2R | 25286936 | 2R | 16568107..16568208 | 334..435 | 510 | 100 | Plus |
2R | 25286936 | 2R | 16566936..16566992 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:36:02 has no hits.
BO09972.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:37 Download gff for
BO09972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4945-PB | 1..901 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:36:02 Download gff for
BO09972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4945-PA | 1..901 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:38:13 Download gff for
BO09972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4945-RC | 564..1472 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:09:06 Download gff for
BO09972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4945-RC | 564..1472 | 9..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:09:06 Download gff for
BO09972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16566928..16566992 | 9..73 | 95 | -> | Plus |
2R | 16567785..16568046 | 74..335 | 100 | -> | Plus |
2R | 16568109..16568208 | 336..435 | 100 | -> | Plus |
2R | 16568310..16568492 | 436..618 | 100 | -> | Plus |
2R | 16568558..16568856 | 619..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:38:13 Download gff for
BO09972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12454433..12454497 | 9..73 | 95 | -> | Plus |
arm_2R | 12455290..12455551 | 74..335 | 100 | -> | Plus |
arm_2R | 12455614..12455713 | 336..435 | 100 | -> | Plus |
arm_2R | 12455815..12455997 | 436..618 | 100 | -> | Plus |
arm_2R | 12456063..12456361 | 619..918 | 99 | | Plus |
BO09972.complete Sequence
1687 bp assembled on 2006-10-10
GenBank Submission: FJ631627
> BO09972.complete
GAAGTTATCAGTCGACATGTCTAAGAAACCACGTGGAAACATTCACAAGA
TACGAGAGTTCGAATTGGAGAAGATCCAGCTTGTGGACGAGTTTGATATC
ATACAGATCGTTGGCGAAGGATGGTTCGGGAAGATTCTACTGGTGGAGCA
TCGGGGATCACAGACGGAGATGGTCCTGAAAGCTGTACCCAAACCATATG
TGACATTGCGTGACTTTTACCGGGAATTCCACTATGGACTCCACTTGGGA
GTCCATCGACACATTGTGACCACCTACGACGTGGCCTTTGAGACAGCGGG
CTTCTACGTTTTCACCCAGGAGTATGCTCCACTAGGGGATCTCACATCGA
ACGTGACCGATTCGGGTGTGGGCGAAGTTTACAGCAAGCGGGTGGCGAAA
CAATTGGCCTCGGCCATTGACTACATGCATTCAAAAGACATAGTGCATCG
GGACATAAAGCTAGACAATGTGCTCATCTATCGCTCGGACTTCCAGCGCA
TCAAGCTCTGCGATTTCGGCGAGTCCTTTCCCACAGGCTCCACTGTGGAG
CGACGCAACGAGTGGTTGCCCTACAGTCCGCCAGAAGTATTAGAAATTAA
GCCCGAGGGCAGTTACAAAGCCGATCCCAGCCACGATGTTTGGCAGTTTG
GCATTGTGATTTTTGTGTGTCTAACTGGCTGTTTGCCCTGGCAGAAGGCT
GCCTCCGATGATCCGCGCTATGTGCGCTATCTGGCCTGGCAGGGCGGACT
TATGATGATGCCGCTGCGGCGAACTCCACGACTTTTCAAGCTGCTCACCT
CGAATGCGCAGCGGATGTTCAAGCGCTTCTTTGCCAGGATCTCCAATCGA
CCCAAGAGCCTGGCCGATGTTACCAAGTTCCTAGACGACCGATGGCTGGC
CAAGACCGCCCAGAAGGAGATGGCCGAGTACGAGACGGACGAACTGTGCC
CCTCCATGTACTCCTTCCACAGCAGCCCGGATGAGAAGAACAAGCTGCTC
TACACCCTGGCCGACTGCGGTATCGAGACCAATGTGGACCGGCAGCAGAA
GAAGAACCGCATCAAAGACTGGATAGAGTCGTCCATCATTACGGAGGAGG
ACGAGGAGGAGAACGAGGAGACCAATTCGGCATCCCCATCCTCGTCGGTC
TCGCGCGAGCCGCTACCCGGGCATATATCGTCGCTGCGCAAGCCCACAAG
TCCGGCGGAGAGCGCAAAGGAGATTAACAGCACCCTGAAGGACGCCACCC
AAAAGCACTTCGATCCACGCACGGGTGCACTGCAGCAGGGACCCAGCGAG
ATGGGTCAGGTGGCCATGGCGTATTCCAAGTCGGCCAGTCCCGCCTCCAA
CTACAGCACCACAGCGTCCACGCTGAACAACGCGGACAGCCTAATGACAC
TGGGCTCGCGGCAGGATCTGCTGGCCAGCAACCTGACTATGTACACGTCC
ATGGAGACCGAATTGAATCGTCTAGAGCTTCGCGATGCCCGGCACTCGAG
CTACGCTAATCTCCCATATGCTTCTCAAGTTAAAGACAGTGCCTACGGAT
CGGTCGATGTCAGCGAGATGGCGGTGGCGGCCAGCAGAAGTCCCTCGCTG
ATGAAGGACACCGCCTACGATCGCACCACCAGCTCCAGCAGCCACAACAT
CGCCCGGCGACAGCGCAGAGCAAGCTTTCTAGACCAT
BO09972.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4945-RA | 1656 | CG4945-PA | 1..1653 | 17..1669 | 8265 | 100 | Plus |
CG4945-RD | 1602 | CG4945-PD | 1..1459 | 17..1475 | 7295 | 100 | Plus |
CG4945-RC | 1734 | CG4945-PC | 1..1459 | 17..1475 | 7295 | 100 | Plus |
CG4945-RD | 1602 | CG4945-PD | 1458..1599 | 1528..1669 | 710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4945-RA | 2146 | CG4945-RA | 423..2075 | 17..1669 | 8265 | 100 | Plus |
CG4945-RD | 1993 | CG4945-RD | 324..1782 | 17..1475 | 7295 | 100 | Plus |
CG4945-RC | 2622 | CG4945-RC | 572..2030 | 17..1475 | 7295 | 100 | Plus |
CG4945-RD | 1993 | CG4945-RD | 1781..1922 | 1528..1669 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16568558..16569045 | 619..1106 | 2440 | 100 | Plus |
2R | 25286936 | 2R | 16569157..16569528 | 1104..1475 | 1860 | 100 | Plus |
2R | 25286936 | 2R | 16567783..16568047 | 72..336 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 16569854..16570049 | 1474..1669 | 980 | 100 | Plus |
2R | 25286936 | 2R | 16568310..16568492 | 436..618 | 915 | 100 | Plus |
2R | 25286936 | 2R | 16568107..16568208 | 334..435 | 510 | 100 | Plus |
2R | 25286936 | 2R | 16566936..16566992 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:18:29 has no hits.
BO09972.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:30 Download gff for
BO09972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4945-RA | 1..1656 | 17..1670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:41 Download gff for
BO09972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4945-RA | 391..2062 | 9..1682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:46 Download gff for
BO09972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4945-RA | 423..2075 | 17..1671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:31 Download gff for
BO09972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4945-RA | 391..2062 | 9..1682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:11 Download gff for
BO09972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4945-RA | 423..2075 | 17..1671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:11 Download gff for
BO09972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16568310..16568492 | 436..618 | 100 | -> | Plus |
2R | 16567785..16568046 | 74..335 | 100 | -> | Plus |
2R | 16568109..16568208 | 336..435 | 100 | -> | Plus |
2R | 16566936..16566992 | 17..73 | 100 | -> | Plus |
2R | 16568558..16569044 | 619..1105 | 100 | -> | Plus |
2R | 16569159..16569528 | 1106..1475 | 100 | -> | Plus |
2R | 16569856..16570049 | 1476..1671 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:46 Download gff for
BO09972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12455815..12455997 | 436..618 | 100 | -> | Plus |
arm_2R | 12457361..12457554 | 1476..1671 | 98 | | Plus |
arm_2R | 12455290..12455551 | 74..335 | 100 | -> | Plus |
arm_2R | 12456664..12457033 | 1106..1475 | 100 | -> | Plus |
arm_2R | 12455614..12455713 | 336..435 | 100 | -> | Plus |
arm_2R | 12454441..12454497 | 17..73 | 100 | -> | Plus |
arm_2R | 12456063..12456549 | 619..1105 | 100 | -> | Plus |
BO09972.pep Sequence
Translation from 16 to 1687
> BO09972.pep
MSKKPRGNIHKIREFELEKIQLVDEFDIIQIVGEGWFGKILLVEHRGSQT
EMVLKAVPKPYVTLRDFYREFHYGLHLGVHRHIVTTYDVAFETAGFYVFT
QEYAPLGDLTSNVTDSGVGEVYSKRVAKQLASAIDYMHSKDIVHRDIKLD
NVLIYRSDFQRIKLCDFGESFPTGSTVERRNEWLPYSPPEVLEIKPEGSY
KADPSHDVWQFGIVIFVCLTGCLPWQKAASDDPRYVRYLAWQGGLMMMPL
RRTPRLFKLLTSNAQRMFKRFFARISNRPKSLADVTKFLDDRWLAKTAQK
EMAEYETDELCPSMYSFHSSPDEKNKLLYTLADCGIETNVDRQQKKNRIK
DWIESSIITEEDEEENEETNSASPSSSVSREPLPGHISSLRKPTSPAESA
KEINSTLKDATQKHFDPRTGALQQGPSEMGQVAMAYSKSASPASNYSTTA
STLNNADSLMTLGSRQDLLASNLTMYTSMETELNRLELRDARHSSYANLP
YASQVKDSAYGSVDVSEMAVAASRSPSLMKDTAYDRTTSSSSHNIARRQR
RASFLDH
BO09972.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4945-PA | 551 | CG4945-PA | 1..551 | 1..551 | 2859 | 100 | Plus |
CG4945-PD | 533 | CG4945-PD | 1..533 | 1..551 | 2737 | 96.7 | Plus |
CG4945-PC | 577 | CG4945-PC | 1..492 | 1..492 | 2542 | 99.2 | Plus |
CG4945-PB | 577 | CG4945-PB | 1..492 | 1..492 | 2542 | 99.2 | Plus |
CG11221-PB | 456 | CG11221-PB | 78..437 | 3..355 | 574 | 33 | Plus |