Clone BO09977 Report

Search the DGRC for BO09977

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:99
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG6656-RA
Protein status:BO09977.pep: validated full length
Sequenced Size:1219

Clone Sequence Records

BO09977.3prime Sequence

907 bp (854 high quality bases) assembled on 2006-04-19

> BO09977.3prime
ATGGTCTAGAAAGCTTGCTGTTTTGCAATCGGTCGGATGATTTTCACAAG
TCTCATCATAGTTATCTAGAAGCAGGGCCTTTACAGAGGCCTCAAACTGG
GTCAGTGAGCACGGTGCATCGCAATTGGGAATGGTCAGCTCCTTGGGGAA
TTTGTCTTCGCTGTTGTAGTAGTAAACCAACTTCACTTCAAAGTCTCCAT
CACTGAAAGACTTGCTGTGATGAAGCTCGAAGGCCAATGCCGATGCATAT
TCCGGAAGCTTGGTAGTCTGGTCCAGTATGCCCAGGGAATTCATCACGTT
AACCAAAGTCACATCATGACCGGAGTACAGGAATATTTTGCGATCGGGAT
TGAGATTCCTCTTGCGCTTATTCTGCATTTTGTTGAGTATATCCGTAAGG
AAAGCGCCACCCTTAATCCGCTTCATTAGATTTGTTTCGGTGAATAGCAT
ATAGCTACGTTCAGCTAGTGGCCTAATCTCCTCGGGGTATATATTCTCAG
TCCAATCGGGCAGCACCAGATTAGCTTCCTCTTCGGTTTTGAGTGTGCCA
TAGAGTAGCTCCACGTCCAGTACATTTGAAATGTTCTTGCCTGTGTTTTT
GGTTAGCAATTTGTACAGCTCCATGTTGTCCTCGTTCAGTTTCTGGAGTT
CAGGAGGCGGAGATTTGTAAAGCTTCTGCAGAATGTGGTCATATTTCAAG
CACGGTTTCTTTTGGGCCAACAGGATATCTTCATTGCGAGATAGCGTATT
GACGGCCACCGGCTGCCAGGGAATGGGTAGCACATTCTTGTTCTCCAGCG
GCGGCATCATGCCGGCCAAGACGCTCTGGGCGCTCATCACACAGCGTTCC
GCGGCCGAGCTGAGCACATTCACCTGCTGCTGGGTGTAAAGGGCTGTCGG
AGGCAGC

BO09977.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6656-PA 1188 CG6656-RA 312..1185 892..19 4370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6656-RA 1542 CG6656-RA 494..1382 907..19 4400 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21876994..21877400 587..181 2035 100 Minus
3R 32079331 3R 21877465..21877628 182..19 820 100 Minus
3R 32079331 3R 21876761..21876898 723..586 690 100 Minus
3R 32079331 3R 21876574..21876688 838..724 575 100 Minus
3R 32079331 3R 21876407..21876476 907..838 290 94.3 Minus
Blast to na_te.dros performed on 2015-02-10 23:29:24 has no hits.

BO09977.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:45 Download gff for BO09977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6656-PA 297..1188 15..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:36:15 Download gff for BO09977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6656-PA 297..1188 15..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:42:37 Download gff for BO09977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 494..1392 8..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:56:21 Download gff for BO09977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 494..1392 8..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:56:21 Download gff for BO09977.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21876407..21876476 838..907 97 -> Minus
3R 21876575..21876688 724..837 100 -> Minus
3R 21876761..21876898 586..723 100 -> Minus
3R 21876996..21877400 181..585 100 -> Minus
3R 21877467..21877638 8..180 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:42:37 Download gff for BO09977.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17702483..17702620 586..723 100 -> Minus
arm_3R 17702129..17702198 838..907 97 -> Minus
arm_3R 17702297..17702410 724..837 100 -> Minus
arm_3R 17702718..17703122 181..585 100 -> Minus
arm_3R 17703189..17703360 8..180 97   Minus

BO09977.5prime Sequence

833 bp (814 high quality bases) assembled on 2006-04-19

> BO09977.5prime
GAAGTTATCAGTCGACATGGACTGCAAATCGCGACGCGGCACCAAAATAT
CGGTGATCGCCCTGGGAAGTGCCCTCTGTTTCGTCATGATGGCATACTTT
GTGTTCGGCGACAGCAACGACGAGCAGGGTTTGCGGAATCTACGCATGAT
ATCCATACTGTTCCGACATGGTGCCAAGAATCCGAGTGGCTTCTATCCGT
TGGATCCGCACGCTGCCCACGACTGGCAGGGCGGGATGGGAGCCCTCACG
CCGAAAGGCAGCCTGCAGGCGTACAACCTGGGAAGGAATCTGCGCATGCG
CTACTACCGTCTGCTGCCTCCGAACAGCCTTTACACCCAGCAGCAGGTGA
ATGTGCTCAGCTCGGCCGCGGAACGCTGTGTGATGAGCGCCCAGAGCGTC
TTGGCCGGCATGATGCCGCCGCTGGAGAACAAGAATGTGCTACCCATTCC
CTGGCAGCCGGTGGCCGTCAATACGCTATCTCGCAATGAAGATATCCTGT
TGGCCCAAAAGAAACCGTGCTTGAAATATGACCACATTCTGCAGAAGCTT
TACAAATCTCCGCCTCCTGAACTCCAGAAACTGAACGAGGACAACATGGA
GCTGTACAAATTGCTAACCAAAAACACAGGCAAGAACATTTCAAATGTAC
TGGACGTGGAGCTACTCTATGGCACACTCAAAACCGAAGAGGAAGCTAAT
CTGGTGCTGCCCGATTGGACTGAGAATATATACCCCGAGGAGATTAGGCC
ACTAGCTGAACGTAGCTATATGCTATTCACCGAAACAAATCTAATGAAGC
GGATTAAGGGTGGCGCTTTCCTTACGGATATAC

BO09977.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6656-PA 1188 CG6656-RA 1..817 17..833 4085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6656-RA 1542 CG6656-RA 198..1014 17..833 4085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21876994..21877194 633..833 1005 100 Plus
3R 32079331 3R 21875490..21875630 17..157 705 100 Plus
3R 32079331 3R 21876761..21876898 497..634 690 100 Plus
3R 32079331 3R 21876347..21876476 253..382 650 100 Plus
3R 32079331 3R 21876574..21876688 382..496 575 100 Plus
3R 32079331 3R 21875715..21875810 158..253 480 100 Plus
Blast to na_te.dros performed on 2015-02-02 12:19:52 has no hits.

BO09977.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:46 Download gff for BO09977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6656-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:36:16 Download gff for BO09977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6656-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:58:24 Download gff for BO09977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 198..1014 17..833 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:39:40 Download gff for BO09977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 198..1014 17..833 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:39:40 Download gff for BO09977.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21875490..21875630 17..157 100 -> Plus
3R 21875715..21875810 158..253 100 -> Plus
3R 21876348..21876476 254..382 100 -> Plus
3R 21876575..21876688 383..496 100 -> Plus
3R 21876761..21876898 497..634 100 -> Plus
3R 21876996..21877194 635..833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:58:24 Download gff for BO09977.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17702297..17702410 383..496 100 -> Plus
arm_3R 17701212..17701352 17..157 100 -> Plus
arm_3R 17701437..17701532 158..253 100 -> Plus
arm_3R 17702070..17702198 254..382 100 -> Plus
arm_3R 17702483..17702620 497..634 100 -> Plus
arm_3R 17702718..17702916 635..833 100   Plus

BO09977.complete Sequence

1219 bp (1219 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631628

> BO09977.complete
GAAGTTATCAGTCGACATGGACTGCAAATCGCGACGCGGCACCAAAATAT
CGGTGATCGCCCTGGGAAGTGCCCTCTGTTTCGTCATGATGGCATACTTT
GTGTTCGGCGACAGCAACGACGAGCAGGGTTTGCGGAATCTACGCATGAT
ATCCATACTGTTCCGACATGGTGCCAAGAATCCGAGTGGCTTCTATCCGT
TGGATCCGCACGCTGCCCACGACTGGCAGGGCGGGATGGGAGCCCTCACG
CCGAAAGGCAGCCTGCAGGCGTACAACCTGGGAAGGAATCTGCGCATGCG
CTACTACCGTCTGCTGCCTCCGAACAGCCTTTACACCCAGCAGCAGGTGA
ATGTGCTCAGCTCGGCCGCGGAACGCTGTGTGATGAGCGCCCAGAGCGTC
TTGGCCGGCATGATGCCGCCGCTGGAGAACAAGAATGTGCTACCCATTCC
CTGGCAGCCGGTGGCCGTCAATACGCTATCTCGCAATGAAGATATCCTGT
TGGCCCAAAAGAAACCGTGCTTGAAATATGACCACATTCTGCAGAAGCTT
TACAAATCTCCGCCTCCTGAACTCCAGAAACTGAACGAGGACAACATGGA
GCTGTACAAATTGCTAACCAAAAACACAGGCAAGAACATTTCAAATGTAC
TGGACGTGGAGCTACTCTATGGCACACTCAAAACCGAAGAGGAAGCTAAT
CTGGTGCTGCCCGATTGGACTGAGAATATATACCCCGAGGAGATTAGGCC
ACTAGCTGAACGTAGCTATATGCTATTCACCGAAACAAATCTAATGAAGC
GGATTAAGGGTGGCGCTTTCCTTACGGATATACTCAACAAAATGCAGAAT
AAGCGCAAGAGGAATCTCAATCCCGATCGCAAAATATTCCTGTACTCCGG
TCATGATGTGACTTTGGTTAACGTGATGAATTCCCTGGGCATACTGGACC
AGACTACCAAGCTTCCGGAATATGCATCGGCATTGGCCTTCGAGCTTCAT
CACAGCAAGTCTTTCAGTGATGGAGACTTTGAAGTGAAGTTGGTTTACTA
CTACAACAGCGAAGACAAATTCCCCAAGGAGCTGACCATTCCCAATTGCG
ATGCACCGTGCTCACTGACCCAGTTTGAGGCCTCTGTAAAGGCCCTGCTT
CTAGATAACTATGATGAGACTTGTGAAAATCATCCGACCGATTGCAAAAC
AGCAAGCTTTCTAGACCAT

BO09977.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6656-RA 1188 CG6656-PA 1..1185 17..1201 5925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6656-RA 1542 CG6656-RA 198..1382 17..1201 5925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21876994..21877400 633..1039 2035 100 Plus
3R 32079331 3R 21877465..21877628 1038..1201 820 100 Plus
3R 32079331 3R 21875490..21875630 17..157 705 100 Plus
3R 32079331 3R 21876761..21876898 497..634 690 100 Plus
3R 32079331 3R 21876347..21876476 253..382 650 100 Plus
3R 32079331 3R 21876574..21876688 382..496 575 100 Plus
3R 32079331 3R 21875715..21875810 158..253 480 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:46:34 has no hits.

BO09977.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:05 Download gff for BO09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 1..1188 17..1205 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:34 Download gff for BO09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 198..1392 17..1212 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:58 Download gff for BO09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 198..1382 17..1203 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:06 Download gff for BO09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 188..1382 17..1212 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:07 Download gff for BO09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG6656-RA 198..1382 17..1203 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:07 Download gff for BO09977.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21876761..21876898 497..634 100 -> Plus
3R 21875490..21875630 17..157 100 -> Plus
3R 21875715..21875810 158..253 100 -> Plus
3R 21876348..21876476 254..382 100 -> Plus
3R 21876575..21876688 383..496 100 -> Plus
3R 21876996..21877400 635..1039 100 -> Plus
3R 21877467..21877628 1040..1203 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:58 Download gff for BO09977.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17702070..17702198 254..382 100 -> Plus
arm_3R 17702297..17702410 383..496 100 -> Plus
arm_3R 17702483..17702620 497..634 100 -> Plus
arm_3R 17701212..17701352 17..157 100 -> Plus
arm_3R 17701437..17701532 158..253 100 -> Plus
arm_3R 17702718..17703122 635..1039 100 -> Plus
arm_3R 17703189..17703350 1040..1203 98   Plus

BO09977.pep Sequence

Translation from 16 to 1219

> BO09977.pep
MDCKSRRGTKISVIALGSALCFVMMAYFVFGDSNDEQGLRNLRMISILFR
HGAKNPSGFYPLDPHAAHDWQGGMGALTPKGSLQAYNLGRNLRMRYYRLL
PPNSLYTQQQVNVLSSAAERCVMSAQSVLAGMMPPLENKNVLPIPWQPVA
VNTLSRNEDILLAQKKPCLKYDHILQKLYKSPPPELQKLNEDNMELYKLL
TKNTGKNISNVLDVELLYGTLKTEEEANLVLPDWTENIYPEEIRPLAERS
YMLFTETNLMKRIKGGAFLTDILNKMQNKRKRNLNPDRKIFLYSGHDVTL
VNVMNSLGILDQTTKLPEYASALAFELHHSKSFSDGDFEVKLVYYYNSED
KFPKELTIPNCDAPCSLTQFEASVKALLLDNYDETCENHPTDCKTASFLD
H

BO09977.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6656-PA 395 CG6656-PA 1..395 1..395 2080 100 Plus
CG9449-PK 391 CG9449-PK 36..378 42..388 542 35.8 Plus
CG9449-PH 404 CG9449-PH 49..391 42..388 542 35.8 Plus
CG9449-PG 404 CG9449-PG 49..391 42..388 542 35.8 Plus
CG9449-PF 404 CG9449-PF 49..391 42..388 542 35.8 Plus