Clone Sequence Records
BO09977.3prime Sequence
907 bp (854 high quality bases) assembled on 2006-04-19
> BO09977.3prime
ATGGTCTAGAAAGCTTGCTGTTTTGCAATCGGTCGGATGATTTTCACAAG
TCTCATCATAGTTATCTAGAAGCAGGGCCTTTACAGAGGCCTCAAACTGG
GTCAGTGAGCACGGTGCATCGCAATTGGGAATGGTCAGCTCCTTGGGGAA
TTTGTCTTCGCTGTTGTAGTAGTAAACCAACTTCACTTCAAAGTCTCCAT
CACTGAAAGACTTGCTGTGATGAAGCTCGAAGGCCAATGCCGATGCATAT
TCCGGAAGCTTGGTAGTCTGGTCCAGTATGCCCAGGGAATTCATCACGTT
AACCAAAGTCACATCATGACCGGAGTACAGGAATATTTTGCGATCGGGAT
TGAGATTCCTCTTGCGCTTATTCTGCATTTTGTTGAGTATATCCGTAAGG
AAAGCGCCACCCTTAATCCGCTTCATTAGATTTGTTTCGGTGAATAGCAT
ATAGCTACGTTCAGCTAGTGGCCTAATCTCCTCGGGGTATATATTCTCAG
TCCAATCGGGCAGCACCAGATTAGCTTCCTCTTCGGTTTTGAGTGTGCCA
TAGAGTAGCTCCACGTCCAGTACATTTGAAATGTTCTTGCCTGTGTTTTT
GGTTAGCAATTTGTACAGCTCCATGTTGTCCTCGTTCAGTTTCTGGAGTT
CAGGAGGCGGAGATTTGTAAAGCTTCTGCAGAATGTGGTCATATTTCAAG
CACGGTTTCTTTTGGGCCAACAGGATATCTTCATTGCGAGATAGCGTATT
GACGGCCACCGGCTGCCAGGGAATGGGTAGCACATTCTTGTTCTCCAGCG
GCGGCATCATGCCGGCCAAGACGCTCTGGGCGCTCATCACACAGCGTTCC
GCGGCCGAGCTGAGCACATTCACCTGCTGCTGGGTGTAAAGGGCTGTCGG
AGGCAGC
BO09977.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6656-PA | 1188 | CG6656-RA | 312..1185 | 892..19 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6656-RA | 1542 | CG6656-RA | 494..1382 | 907..19 | 4400 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21876994..21877400 | 587..181 | 2035 | 100 | Minus |
3R | 32079331 | 3R | 21877465..21877628 | 182..19 | 820 | 100 | Minus |
3R | 32079331 | 3R | 21876761..21876898 | 723..586 | 690 | 100 | Minus |
3R | 32079331 | 3R | 21876574..21876688 | 838..724 | 575 | 100 | Minus |
3R | 32079331 | 3R | 21876407..21876476 | 907..838 | 290 | 94.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:29:24 has no hits.
BO09977.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:45 Download gff for
BO09977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6656-PA | 297..1188 | 15..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:36:15 Download gff for
BO09977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6656-PA | 297..1188 | 15..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:42:37 Download gff for
BO09977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6656-RA | 494..1392 | 8..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:56:21 Download gff for
BO09977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6656-RA | 494..1392 | 8..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:56:21 Download gff for
BO09977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21876407..21876476 | 838..907 | 97 | -> | Minus |
3R | 21876575..21876688 | 724..837 | 100 | -> | Minus |
3R | 21876761..21876898 | 586..723 | 100 | -> | Minus |
3R | 21876996..21877400 | 181..585 | 100 | -> | Minus |
3R | 21877467..21877638 | 8..180 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:42:37 Download gff for
BO09977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17702483..17702620 | 586..723 | 100 | -> | Minus |
arm_3R | 17702129..17702198 | 838..907 | 97 | -> | Minus |
arm_3R | 17702297..17702410 | 724..837 | 100 | -> | Minus |
arm_3R | 17702718..17703122 | 181..585 | 100 | -> | Minus |
arm_3R | 17703189..17703360 | 8..180 | 97 | | Minus |
BO09977.5prime Sequence
833 bp (814 high quality bases) assembled on 2006-04-19
> BO09977.5prime
GAAGTTATCAGTCGACATGGACTGCAAATCGCGACGCGGCACCAAAATAT
CGGTGATCGCCCTGGGAAGTGCCCTCTGTTTCGTCATGATGGCATACTTT
GTGTTCGGCGACAGCAACGACGAGCAGGGTTTGCGGAATCTACGCATGAT
ATCCATACTGTTCCGACATGGTGCCAAGAATCCGAGTGGCTTCTATCCGT
TGGATCCGCACGCTGCCCACGACTGGCAGGGCGGGATGGGAGCCCTCACG
CCGAAAGGCAGCCTGCAGGCGTACAACCTGGGAAGGAATCTGCGCATGCG
CTACTACCGTCTGCTGCCTCCGAACAGCCTTTACACCCAGCAGCAGGTGA
ATGTGCTCAGCTCGGCCGCGGAACGCTGTGTGATGAGCGCCCAGAGCGTC
TTGGCCGGCATGATGCCGCCGCTGGAGAACAAGAATGTGCTACCCATTCC
CTGGCAGCCGGTGGCCGTCAATACGCTATCTCGCAATGAAGATATCCTGT
TGGCCCAAAAGAAACCGTGCTTGAAATATGACCACATTCTGCAGAAGCTT
TACAAATCTCCGCCTCCTGAACTCCAGAAACTGAACGAGGACAACATGGA
GCTGTACAAATTGCTAACCAAAAACACAGGCAAGAACATTTCAAATGTAC
TGGACGTGGAGCTACTCTATGGCACACTCAAAACCGAAGAGGAAGCTAAT
CTGGTGCTGCCCGATTGGACTGAGAATATATACCCCGAGGAGATTAGGCC
ACTAGCTGAACGTAGCTATATGCTATTCACCGAAACAAATCTAATGAAGC
GGATTAAGGGTGGCGCTTTCCTTACGGATATAC
BO09977.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6656-PA | 1188 | CG6656-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:19:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6656-RA | 1542 | CG6656-RA | 198..1014 | 17..833 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21876994..21877194 | 633..833 | 1005 | 100 | Plus |
3R | 32079331 | 3R | 21875490..21875630 | 17..157 | 705 | 100 | Plus |
3R | 32079331 | 3R | 21876761..21876898 | 497..634 | 690 | 100 | Plus |
3R | 32079331 | 3R | 21876347..21876476 | 253..382 | 650 | 100 | Plus |
3R | 32079331 | 3R | 21876574..21876688 | 382..496 | 575 | 100 | Plus |
3R | 32079331 | 3R | 21875715..21875810 | 158..253 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:19:52 has no hits.
BO09977.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:26:46 Download gff for
BO09977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6656-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:36:16 Download gff for
BO09977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6656-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:58:24 Download gff for
BO09977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6656-RA | 198..1014 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:39:40 Download gff for
BO09977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6656-RA | 198..1014 | 17..833 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:39:40 Download gff for
BO09977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21875490..21875630 | 17..157 | 100 | -> | Plus |
3R | 21875715..21875810 | 158..253 | 100 | -> | Plus |
3R | 21876348..21876476 | 254..382 | 100 | -> | Plus |
3R | 21876575..21876688 | 383..496 | 100 | -> | Plus |
3R | 21876761..21876898 | 497..634 | 100 | -> | Plus |
3R | 21876996..21877194 | 635..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:58:24 Download gff for
BO09977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17702297..17702410 | 383..496 | 100 | -> | Plus |
arm_3R | 17701212..17701352 | 17..157 | 100 | -> | Plus |
arm_3R | 17701437..17701532 | 158..253 | 100 | -> | Plus |
arm_3R | 17702070..17702198 | 254..382 | 100 | -> | Plus |
arm_3R | 17702483..17702620 | 497..634 | 100 | -> | Plus |
arm_3R | 17702718..17702916 | 635..833 | 100 | | Plus |
BO09977.complete Sequence
1219 bp (1219 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631628
> BO09977.complete
GAAGTTATCAGTCGACATGGACTGCAAATCGCGACGCGGCACCAAAATAT
CGGTGATCGCCCTGGGAAGTGCCCTCTGTTTCGTCATGATGGCATACTTT
GTGTTCGGCGACAGCAACGACGAGCAGGGTTTGCGGAATCTACGCATGAT
ATCCATACTGTTCCGACATGGTGCCAAGAATCCGAGTGGCTTCTATCCGT
TGGATCCGCACGCTGCCCACGACTGGCAGGGCGGGATGGGAGCCCTCACG
CCGAAAGGCAGCCTGCAGGCGTACAACCTGGGAAGGAATCTGCGCATGCG
CTACTACCGTCTGCTGCCTCCGAACAGCCTTTACACCCAGCAGCAGGTGA
ATGTGCTCAGCTCGGCCGCGGAACGCTGTGTGATGAGCGCCCAGAGCGTC
TTGGCCGGCATGATGCCGCCGCTGGAGAACAAGAATGTGCTACCCATTCC
CTGGCAGCCGGTGGCCGTCAATACGCTATCTCGCAATGAAGATATCCTGT
TGGCCCAAAAGAAACCGTGCTTGAAATATGACCACATTCTGCAGAAGCTT
TACAAATCTCCGCCTCCTGAACTCCAGAAACTGAACGAGGACAACATGGA
GCTGTACAAATTGCTAACCAAAAACACAGGCAAGAACATTTCAAATGTAC
TGGACGTGGAGCTACTCTATGGCACACTCAAAACCGAAGAGGAAGCTAAT
CTGGTGCTGCCCGATTGGACTGAGAATATATACCCCGAGGAGATTAGGCC
ACTAGCTGAACGTAGCTATATGCTATTCACCGAAACAAATCTAATGAAGC
GGATTAAGGGTGGCGCTTTCCTTACGGATATACTCAACAAAATGCAGAAT
AAGCGCAAGAGGAATCTCAATCCCGATCGCAAAATATTCCTGTACTCCGG
TCATGATGTGACTTTGGTTAACGTGATGAATTCCCTGGGCATACTGGACC
AGACTACCAAGCTTCCGGAATATGCATCGGCATTGGCCTTCGAGCTTCAT
CACAGCAAGTCTTTCAGTGATGGAGACTTTGAAGTGAAGTTGGTTTACTA
CTACAACAGCGAAGACAAATTCCCCAAGGAGCTGACCATTCCCAATTGCG
ATGCACCGTGCTCACTGACCCAGTTTGAGGCCTCTGTAAAGGCCCTGCTT
CTAGATAACTATGATGAGACTTGTGAAAATCATCCGACCGATTGCAAAAC
AGCAAGCTTTCTAGACCAT
BO09977.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6656-RA | 1188 | CG6656-PA | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6656-RA | 1542 | CG6656-RA | 198..1382 | 17..1201 | 5925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21876994..21877400 | 633..1039 | 2035 | 100 | Plus |
3R | 32079331 | 3R | 21877465..21877628 | 1038..1201 | 820 | 100 | Plus |
3R | 32079331 | 3R | 21875490..21875630 | 17..157 | 705 | 100 | Plus |
3R | 32079331 | 3R | 21876761..21876898 | 497..634 | 690 | 100 | Plus |
3R | 32079331 | 3R | 21876347..21876476 | 253..382 | 650 | 100 | Plus |
3R | 32079331 | 3R | 21876574..21876688 | 382..496 | 575 | 100 | Plus |
3R | 32079331 | 3R | 21875715..21875810 | 158..253 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:46:34 has no hits.
BO09977.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:05 Download gff for
BO09977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6656-RA | 1..1188 | 17..1205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:34 Download gff for
BO09977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6656-RA | 198..1392 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:58 Download gff for
BO09977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6656-RA | 198..1382 | 17..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:06 Download gff for
BO09977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6656-RA | 188..1382 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:07 Download gff for
BO09977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6656-RA | 198..1382 | 17..1203 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:07 Download gff for
BO09977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21876761..21876898 | 497..634 | 100 | -> | Plus |
3R | 21875490..21875630 | 17..157 | 100 | -> | Plus |
3R | 21875715..21875810 | 158..253 | 100 | -> | Plus |
3R | 21876348..21876476 | 254..382 | 100 | -> | Plus |
3R | 21876575..21876688 | 383..496 | 100 | -> | Plus |
3R | 21876996..21877400 | 635..1039 | 100 | -> | Plus |
3R | 21877467..21877628 | 1040..1203 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:58 Download gff for
BO09977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17702070..17702198 | 254..382 | 100 | -> | Plus |
arm_3R | 17702297..17702410 | 383..496 | 100 | -> | Plus |
arm_3R | 17702483..17702620 | 497..634 | 100 | -> | Plus |
arm_3R | 17701212..17701352 | 17..157 | 100 | -> | Plus |
arm_3R | 17701437..17701532 | 158..253 | 100 | -> | Plus |
arm_3R | 17702718..17703122 | 635..1039 | 100 | -> | Plus |
arm_3R | 17703189..17703350 | 1040..1203 | 98 | | Plus |
BO09977.pep Sequence
Translation from 16 to 1219
> BO09977.pep
MDCKSRRGTKISVIALGSALCFVMMAYFVFGDSNDEQGLRNLRMISILFR
HGAKNPSGFYPLDPHAAHDWQGGMGALTPKGSLQAYNLGRNLRMRYYRLL
PPNSLYTQQQVNVLSSAAERCVMSAQSVLAGMMPPLENKNVLPIPWQPVA
VNTLSRNEDILLAQKKPCLKYDHILQKLYKSPPPELQKLNEDNMELYKLL
TKNTGKNISNVLDVELLYGTLKTEEEANLVLPDWTENIYPEEIRPLAERS
YMLFTETNLMKRIKGGAFLTDILNKMQNKRKRNLNPDRKIFLYSGHDVTL
VNVMNSLGILDQTTKLPEYASALAFELHHSKSFSDGDFEVKLVYYYNSED
KFPKELTIPNCDAPCSLTQFEASVKALLLDNYDETCENHPTDCKTASFLD
H
BO09977.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6656-PA | 395 | CG6656-PA | 1..395 | 1..395 | 2080 | 100 | Plus |
CG9449-PK | 391 | CG9449-PK | 36..378 | 42..388 | 542 | 35.8 | Plus |
CG9449-PH | 404 | CG9449-PH | 49..391 | 42..388 | 542 | 35.8 | Plus |
CG9449-PG | 404 | CG9449-PG | 49..391 | 42..388 | 542 | 35.8 | Plus |
CG9449-PF | 404 | CG9449-PF | 49..391 | 42..388 | 542 | 35.8 | Plus |