Clone Sequence Records
BO09995.3prime Sequence
896 bp (836 high quality bases) assembled on 2006-04-19
> BO09995.3prime
ATGGTCTAGAAAGCTTGCGTAGGTGCGCGGAGCAGGTGGAATGGGTGCAA
CGGAGCTGTCCAAGGTGGTGTCCACAACCGGGCGATATTTGATCGATGCA
CATCCTTTGTTACCCAGTGCAAAGGTCATGGTGTGCTTGCGCCAATGCTC
CTCGAATGGTTTCTTTTTCTGTCCGGCCAGTGGTGCTCCATAGTCCAGCT
CATCCACGCGCGTCTTGAAATCCTCGCGAGCATGGGAGCCCCTCGACTCC
TTGCGATTTTCCATGGCTGTAATGATGTGCACCGCATTGGCTAGCATATT
CTGCAGCTCTAGCGTCTCAACTAGGTTGGAGTTCCACACCATCGTACGAT
CGGTTGTCTTGATGTCCTTGAACTGTTCACATAACTCGGCCACTTTGAGC
AGACCCTCCTTGAGCAGTTTTCCCTCCCGGAAAACAGCCGCATGTTTGGT
CATGGTCCGCTGAAGTTCCATTCTCAACACCGCAGTGGGAATGCATCCGT
CGGCGCAGCGCAGGCGCTTAAAATTATCCAGCGACTTCTCCGTGGCTTTG
TCCTCCACCTGGGGCGGCTTATCCCCCGGACAGTTGTTTGCGGCAATGTC
CAGAGCACAGACGCGGCCAAAGATGATCAGATCCAGCAGGGAGTTGGCAC
CCAATCGATTTGCTCCGTGTACTGAGGCGCAGGAAGTTTCCCCGCAGGAG
TACAGTCCCTTGACAACCTGTTCCTTGCCATTCTCATCGATGGTGACCAC
ACGACCCTTGTAATCCGTTGGTATGCCGCCCATGTTGTAGTGCACAGTTG
GCAGCACTGGTACTGGTTCCTTGGTCACATCCACTTTGGCAAAAATCCGG
GCGGTGACCATAATGCCCCGCAAATCGTGCTTGATGATCTTGGCGT
BO09995.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-PA | 1956 | CG5718-RA | 1104..1953 | 868..19 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-RA | 2148 | CG5718-RA | 1142..2019 | 896..19 | 4330 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11922739..11923616 | 19..896 | 4315 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:11:14 has no hits.
BO09995.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:21 Download gff for
BO09995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-PA | 1076..1956 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:02 Download gff for
BO09995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-PA | 1076..1956 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:55:02 Download gff for
BO09995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 1142..2027 | 10..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:09:10 Download gff for
BO09995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 1142..2027 | 10..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:09:10 Download gff for
BO09995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11922730..11923616 | 10..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:55:02 Download gff for
BO09995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11915830..11916716 | 10..896 | 99 | | Plus |
BO09995.5prime Sequence
880 bp (863 high quality bases) assembled on 2006-04-19
> BO09995.5prime
GAAGTTATCAGTCGACATGAATCGCCTGTTTCTCAAAAGGGCGGGACAGC
ATGTAACCAGGAGCCTTCTTGGTCCAAATGGGAGTCGTCTGCTTCAAGTG
TCCTGCGTTCGAGATGCCAGTTGCAAAGATGAGTACTCCTTGATAGACCA
CAAGTTCGATGCGATTGTCATTGGTGCCGGTGGAGCTGGAATGCGGGCTG
GATTTGGGCTGGCGGAGAAGGGTTTCCAAACGGCCATTATATCAAAGCTA
TTTCCCACCCGATCTCACACGGTGGCTGCCCAGGGTGGTGTTAATGCCGC
CCTCTCAAATATGGACAAGGACGACTGGAAGTACCACTTCTACGACACGG
TGAAGGGCTCCGATTGGCTGGGTGATCAGAACGCGATCCATTACATGTGT
CGGGAGGCGGAGAGGGCGGTCTGCGAACTGGACATGTACGGGATGCCCTT
CTCGCGAAAGCCCGATGGCAAGATCTACCAGCGACCTTTTGGAGGTCAGA
CCTTGGACTACGGAAAGGGCGGGGTGGCCAGAAGGGCGTGTGCATGTGCA
GATCGCACGGGTCACGCCCTTATCCACACACTGTACGGACAAACGCTGAA
GCACTCCGATTCTTGCCACTATTTTGTGGACTACTTCGTTCTGGATCTGA
TCATGTCGCAGGGTGCATGTGTGGGATGTTTGGCTTGGAAACTGGATGAT
GGCACCTTCCATCGGTTTTTGGCCAAAAATACGGTTGTTGCCGCCGGCGG
TTGTGGTCGGGTGTACTTCTCCACGACCGCCGGACACACATGTACCGGCG
ATGGCAATGCGTGGGTGTCTAGACAGGAGCTGCCGCTCATGGATATGGAA
TTTGTGCAGTTTCATCCCACTGGCATCTAC
BO09995.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-PA | 1956 | CG5718-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
| CG17246-PC | 1986 | Scs-fp-RC | 361..392 | 341..372 | 135 | 96.8 | Plus |
| CG17246-PB | 1986 | Scs-fp-RB | 361..392 | 341..372 | 135 | 96.8 | Plus |
| CG17246-PA | 1986 | Scs-fp-RA | 361..392 | 341..372 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-RA | 2148 | CG5718-RA | 67..930 | 17..880 | 4320 | 100 | Plus |
| SdhA-RA | 2750 | CG17246-RA | 405..1122 | 157..880 | 505 | 72.6 | Plus |
| SdhA-RC | 2663 | CG17246-RC | 318..1035 | 157..880 | 505 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11923828..11924691 | 880..17 | 4320 | 100 | Minus |
| 2R | 25286936 | 2R | 19393998..19394324 | 483..157 | 450 | 75.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:19:41 has no hits.
BO09995.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:22 Download gff for
BO09995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:04 Download gff for
BO09995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:19:12 Download gff for
BO09995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 59..930 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:35:01 Download gff for
BO09995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 59..930 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:35:01 Download gff for
BO09995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11923828..11924699 | 9..880 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:19:12 Download gff for
BO09995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11916928..11917799 | 9..880 | 99 | | Minus |
BO09995.complete Sequence
1987 bp assembled on 2009-08-24
GenBank Submission: KX794531
> BO09995.complete
GAAGTTATCAGTCGACATGAATCGCCTGTTTCTCAAAAGGGCGGGACAGC
ATGTAACCAGGAGCCTTCTTGGTCCAAATGGGAGTCGTCTGCTTCAAGTG
TCCTGCGTTCGAGATGCCAGTTGCAAAGATGAGTACTCCTTGATAGACCA
CAAGTTCGATGCGATTGTCATTGGTGCCGGTGGAGCTGGAATGCGGGCTG
GATTTGGGCTGGCGGAGAAGGGTTTCCAAACGGCCATTATATCAAAGCTA
TTTCCCACCCGATCTCACACGGTGGCTGCCCAGGGTGGTGTTAATGCCGC
CCTCTCAAATATGGACAAGGACGACTGGAAGTACCACTTCTACGACACGG
TGAAGGGCTCCGATTGGCTGGGTGATCAGAACGCGATCCATTACATGTGT
CGGGAGGCGGAGAGGGCGGTCTGCGAACTGGACATGTACGGGATGCCCTT
CTCGCGAAAGCCCGATGGCAAGATCTACCAGCGACCTTTTGGAGGTCAGA
CCTTGGACTACGGAAAGGGCGGGGTGGCCAGAAGGGCGTGTGCATGTGCA
GATCGCACGGGTCACGCCCTTATCCACACACTGTACGGACAAACGCTGAA
GCACTCCGATTCTTGCCACTATTTTGTGGACTACTTCGTTCTGGATCTGA
TCATGTCGCAGGGTGCATGTGTGGGATGTTTGGCTTGGAAACTGGATGAT
GGCACCTTCCATCGGTTTTTGGCCAAAAATACGGTTGTTGCCGCCGGCGG
TTGTGGTCGGGTGTACTTCTCCACGACCGCCGGACACACATGTACCGGCG
ATGGCAATGCGTGGGTGTCTAGACAGGAGCTGCCGCTCATGGATATGGAA
TTTGTGCAGTTTCATCCCACTGGCATCTACGGAGCCGGATGCCTTATCAC
CGAGGGAGTTAGGGGCGAAGGCGGTTTCTTCTTGAACTGCAAGGGAGAAC
GTTTCATGGAACGCTATGCTCCAAAGGCCAAGGATCTGGCGTCCAGAGAT
GTGGTGGCGCGGGCCATGACCATGGAGGTTCTTGCTGGCAATGGTTGTGG
TCCGCTCAAGGATCATGTGCACCTTCAGCTCCACCATATCGACGCCAAGA
TCATCAAGCAACGATTGCCGGGCATTATGGTCACCGCCCGGATTTTTGCC
AAAGTGGATGTGACCAAGGAACCAGTACCAGTGCTGCCAACTGTGCACTA
CAACATGGGCGGCATACCAACGGATTACAAGGGTCGTGTGGTCACCATCG
ATGAGAATGGCAAGGAACAGGTTGTCAAGGGACTGTACTCCTGCGGGGAA
ACTTCCTGCGCCTCAGTACACGGAGCAAATCGATTGGGTGCCAACTCCCT
GCTGGATCTGATCATCTTTGGCCGCGTCTGTGCTCTGGACATTGCCGCAA
ACAACTGTCCGGGGGATAAGCCGCCCCAGGTGGAGGACAAAGCCACGGAG
AAGTCGCTGGATAATTTTAAGCGCCTGCGCTGCGCCGACGGATGCATTCC
CACTGCGGTGTTGAGAATGGAACTTCAGCGGACCATGACCAAACATGCGG
CTGTTTTCCGGGAGGGAAAACTGCTCAAGGAGGGTCTGCTCAAAGTGGCC
GAGTTATGTGAACAGTTCAAGGACATCAAGACAACCGATCGTACGATGGT
GTGGAACTCCAACCTAGTTGAGACGCTAGAGCTGCAGAATATGCTAGCCA
ATGCGGTGCACATCATTACAGCCATGGAAAATCGCAAGGAGTCGAGGGGC
TCCCATGCTCGCGAGGATTTCAAGACGCGCGTGGATGAGCTGGACTATGG
AGCACCACTGGCCGGACAGAAAAAGAAACCATTCGAGGAGCATTGGCGCA
AGCACACCATGACCTTTGCACTGGGTAACAAAGGATGTGCATCGATCAAA
TATCGCCCGGTTGTGGACACCACCTTGGACAGCTCCGTTGCACCCATTCC
ACCTGCTCCGCGCACCTACGCAAGCTTTCTAGACCAT
BO09995.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-RA | 1956 | CG5718-PA | 1..1953 | 17..1969 | 9765 | 100 | Plus |
| SdhA-RA | 1986 | CG17246-PA | 177..1041 | 157..1027 | 540 | 71.1 | Plus |
| SdhA-RC | 1986 | CG17246-PC | 177..1041 | 157..1027 | 540 | 71.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-RA | 2148 | CG5718-RA | 67..2019 | 17..1969 | 9765 | 100 | Plus |
| SdhA-RA | 2750 | CG17246-RA | 405..1269 | 157..1027 | 540 | 71.1 | Plus |
| SdhA-RC | 2663 | CG17246-RC | 318..1182 | 157..1027 | 540 | 71.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11922739..11924691 | 1969..17 | 9765 | 100 | Minus |
| 2R | 25286936 | 2R | 19393460..19394324 | 1027..157 | 540 | 71.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:33:31 has no hits.
BO09995.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:06 Download gff for
BO09995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 67..2019 | 17..1971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:01 Download gff for
BO09995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 67..2019 | 17..1971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:23 Download gff for
BO09995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 67..2019 | 17..1971 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:23 Download gff for
BO09995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11922736..11924691 | 17..1971 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:01 Download gff for
BO09995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11915836..11917791 | 17..1971 | 99 | | Minus |
BO09995.pep Sequence
Translation from 16 to 1987
> BO09995.pep
MNRLFLKRAGQHVTRSLLGPNGSRLLQVSCVRDASCKDEYSLIDHKFDAI
VIGAGGAGMRAGFGLAEKGFQTAIISKLFPTRSHTVAAQGGVNAALSNMD
KDDWKYHFYDTVKGSDWLGDQNAIHYMCREAERAVCELDMYGMPFSRKPD
GKIYQRPFGGQTLDYGKGGVARRACACADRTGHALIHTLYGQTLKHSDSC
HYFVDYFVLDLIMSQGACVGCLAWKLDDGTFHRFLAKNTVVAAGGCGRVY
FSTTAGHTCTGDGNAWVSRQELPLMDMEFVQFHPTGIYGAGCLITEGVRG
EGGFFLNCKGERFMERYAPKAKDLASRDVVARAMTMEVLAGNGCGPLKDH
VHLQLHHIDAKIIKQRLPGIMVTARIFAKVDVTKEPVPVLPTVHYNMGGI
PTDYKGRVVTIDENGKEQVVKGLYSCGETSCASVHGANRLGANSLLDLII
FGRVCALDIAANNCPGDKPPQVEDKATEKSLDNFKRLRCADGCIPTAVLR
MELQRTMTKHAAVFREGKLLKEGLLKVAELCEQFKDIKTTDRTMVWNSNL
VETLELQNMLANAVHIITAMENRKESRGSHAREDFKTRVDELDYGAPLAG
QKKKPFEEHWRKHTMTFALGNKGCASIKYRPVVDTTLDSSVAPIPPAPRT
YASFLDH
BO09995.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-PA | 651 | CG5718-PA | 1..651 | 1..651 | 3474 | 100 | Plus |
| SdhA-PA | 661 | CG17246-PA | 39..661 | 27..651 | 2182 | 63.7 | Plus |
| SdhA-PC | 661 | CG17246-PC | 39..661 | 27..651 | 2182 | 63.7 | Plus |
| SdhA-PB | 661 | CG17246-PB | 39..661 | 27..651 | 2182 | 63.7 | Plus |
