Clone BO09996 Report

Search the DGRC for BO09996

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:99
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG14969-RA
Protein status:BO09996.pep: validated full length
Sequenced Size:979

Clone Sequence Records

BO09996.3prime Sequence

919 bp (852 high quality bases) assembled on 2006-04-19

> BO09996.3prime
ATGGTCTAGAAAGCTTGCCGCGCGTTTGGGCTTTTCAAGAGGCTCATCGT
CACTGGAGTAGTCGGATGCGGGACTGTGAGCAACCTTTTTCCCCCTAGGA
GGTTCTTCATCACTGGACTCGTCCAACAGGTGTGTTCCAGCACCGATCAA
TACATTGGCGATCTTTTCTGTTCGGGCGGAGATTGCAACAGGATCCTCTG
TTGAAGTGGACAGCACGGCAGCCGTGATAAGCGTCGACGTGGAGGGCGCG
TCCAGTTCAGGTTCCTGCTCATTGAGCAAGCCATGATTGGCCTCCCGCCG
CTTGGTCACTACAACTGCCGTAATATAGAAGGTGAAAATGGGCAGCAGGA
CAACTACGCCAACGGCGATGAGAAAATTGGTCAGCTTCACCTCGCGTTGA
CAGCATTTCAGCGTTTTCGACCAATTCAGACGAGTCCGGTTCATATTGTC
CTGCAGATCGAAGCACACACTTCCACCGACTTTCTTTTCCATGCTAAGGT
AGAAATCATTTAGACTCACGTAATCATTTTTGCACTTGAAGCAAACTAAA
TCCGAACTAGCAGATTCTAAGCAATTTTGCAACTTTGTTGAGTTATCGCT
GTATACAATCCAAAAATTATCCCTGAAGCAATTTTCGCAGTTGGCCTTTT
GCCACAGGCTAGTTAGGATTCCTTGGGTGGTAGCCACTATATTGATCCTG
TCCGAGTTCAGATAACGCTTGGAACAGTTGGCGTTCGCAATTAGGTTTCC
GTAATCATTGGTGAGATTGCGGTAGAGATCGACGCAGCCCTCACACAAAT
TCACGGGCACTGATTTTGTGGTGGCGCAGTAGATGAACTTGCTCTGTGCA
TCGCCCAGATCGGCGAGCAATTTCTCGCANGAATGTTTCTTCCCGGCCAG
CAGCATGTTAAACTGTCCA

BO09996.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14969-PA 948 CG14969-RA 45..945 919..19 4461 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14969-RA 1636 CG14969-RA 407..1307 919..19 4479 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3334227..3334513 633..919 1409 99.3 Plus
3L 28110227 3L 3333448..3333693 19..264 1230 100 Plus
3L 28110227 3L 3333984..3334171 445..632 940 100 Plus
3L 28110227 3L 3333745..3333925 264..444 905 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:01:06 has no hits.

BO09996.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:23 Download gff for BO09996.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14969-PA 46..948 15..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:05 Download gff for BO09996.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14969-PA 46..948 15..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:30:16 Download gff for BO09996.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 408..1310 15..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:12:29 Download gff for BO09996.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 408..1310 15..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:12:29 Download gff for BO09996.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3333445..3333692 15..263 99 <- Plus
3L 3333745..3333925 264..444 100 <- Plus
3L 3333984..3334171 445..632 100 <- Plus
3L 3334227..3334512 633..918 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:30:16 Download gff for BO09996.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3334227..3334512 633..918 99   Plus
arm_3L 3333445..3333692 15..263 99 <- Plus
arm_3L 3333745..3333925 264..444 100 <- Plus
arm_3L 3333984..3334171 445..632 100 <- Plus

BO09996.5prime Sequence

934 bp (809 high quality bases) assembled on 2006-04-19

> BO09996.5prime
GAAGTTATCAGTCGACATGCGGAGTTACATTGCACTCTTGGGGCTTATCC
TAACTCTAAGTGGACAGTTTAACATGCTGCTGGCCGGGAAGAAACATTCC
TGCGAGAAATTGCTCGCCGATCTTGGCGATGCACAGAGCAAGTTCATCTA
CTGCGCCACCACAAAATCAGTGCCCGTGAATTTGTGTGAGGGCTGCGTCG
ATCTCTACCGCAATCTCACCAATGATTACGGAAACCTAATTGCGAACGCC
AACTGTTCCAAGCGTTATCTGAACTCGGACAGGATCAATATAGTGGCTAC
CACCCAAGGAATCCTAACTAGCCTGTGGCAAAAGGCCAACTGCGAAAATT
GCTTCAGGGATAATTTTTGGATTGTATACAGCGATAACTCAACAAAGTTG
CAAAATTGCTTAGAATCTGCTAGTTCGGATTTAGTTTGCTTCAAGTGCAA
AAATGATTACGTGAGTCTAAATGATTTCTACCTTAGCATGGAAAAGAAAG
TCGGTGGAAGTGTGTGCTTCGATCTGCAGGACAATATGAACCGGACTCGT
CTGAATTGGTCGAAAACGCTGAAATGCTGTCAACGCGAGGTGAAGCTGAC
CAATTTTCTCATCGCCGTTGGCGTAGTTGTCCTGCTGCCCATTTTCACCT
TCTATATTACGGCAGTTGTAGTGACCAAGCGGCGGGAGGCCAATCATGGC
TTGCTCAATGAGCAGGAACCTGAACTGGACGCGCCCTCCACGTCGACGCT
TATCACGGCTGCCGTGCTGTCCACTTCAACAGAGGATCCTGTTGCAATCT
CCGCCCGAACAGAAAAGATCGCCAATGTATTGATCGGTGCTGGGACACAC
CTGTTGAACGAGTCCAGTGATGAAGAACCTCCTAGGGGGAAAAAAGGTTG
CTCACAGTCCCGCATCCGACTACTCCAGTGACGA

BO09996.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14969-PA 948 CG14969-RA 1..878 17..894 4340 99.7 Plus
CG14969-PA 948 CG14969-RA 874..917 891..934 220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14969-RA 1636 CG14969-RA 363..1279 17..934 4535 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3334227..3334557 347..17 1655 100 Minus
3L 28110227 3L 3333476..3333693 934..716 1015 98.6 Minus
3L 28110227 3L 3333984..3334171 535..348 940 100 Minus
3L 28110227 3L 3333745..3333925 716..536 905 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:47:12 has no hits.

BO09996.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:24 Download gff for BO09996.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14969-PA 1..916 17..933 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:06 Download gff for BO09996.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14969-PA 1..916 17..933 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:10:46 Download gff for BO09996.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 363..1278 17..933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:49 Download gff for BO09996.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 363..1278 17..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:49 Download gff for BO09996.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3333477..3333692 717..933 98 <- Minus
3L 3333745..3333925 536..716 100 <- Minus
3L 3333984..3334171 348..535 100 <- Minus
3L 3334227..3334557 17..347 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:10:46 Download gff for BO09996.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3333477..3333692 717..933 98 <- Minus
arm_3L 3333745..3333925 536..716 100 <- Minus
arm_3L 3333984..3334171 348..535 100 <- Minus
arm_3L 3334227..3334557 17..347 100   Minus

BO09996.complete Sequence

979 bp (979 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631629

> BO09996.complete
GAAGTTATCAGTCGACATGCGGAGTTACATTGCACTCTTGGGGCTTATCC
TAACTCTAAGTGGACAGTTTAACATGCTGCTGGCCGGGAAGAAACATTCC
TGCGAGAAATTGCTCGCCGATCTTGGCGATGCACAGAGCAAGTTCATCTA
CTGCGCCACCACAAAATCAGTGCCCGTGAATTTGTGTGAGGGCTGCGTCG
ATCTCTACCGCAATCTCACCAATGATTACGGAAACCTAATTGCGAACGCC
AACTGTTCCAAGCGTTATCTGAACTCGGACAGGATCAATATAGTGGCTAC
CACCCAAGGAATCCTAACTAGCCTGTGGCAAAAGGCCAACTGCGAAAATT
GCTTCAGGGATAATTTTTGGATTGTATACAGCGATAACTCAACAAAGTTG
CAAAATTGCTTAGAATCTGCTAGTTCGGATTTAGTTTGCTTCAAGTGCAA
AAATGATTACGTGAGTCTAAATGATTTCTACCTTAGCATGGAAAAGAAAG
TCGGTGGAAGTGTGTGCTTCGATCTGCAGGACAATATGAACCGGACTCGT
CTGAATTGGTCGAAAACGCTGAAATGCTGTCAACGCGAGGTGAAGCTGAC
CAATTTTCTCATCGCCGTTGGCGTAGTTGTCCTGCTGCCCATTTTCACCT
TCTATATTACGGCAGTTGTAGTGACCAAGCGGCGGGAGGCCAATCATGGC
TTGCTCAATGAGCAGGAACCTGAACTGGACGCGCCCTCCACGTCGACGCT
TATCACGGCTGCCGTGCTGTCCACTTCAACAGAGGATCCTGTTGCAATCT
CCGCCCGAACAGAAAAGATCGCCAATGTATTGATCGGTGCTGGAACACAC
CTGTTGGACGAGTCCAGTGATGAAGAACCTCCTAGGGGGAAAAAGGTTGC
TCACAGTCCCGCATCCGACTACTCCAGTGACGATGAGCCTCTTGAAAAGC
CCAAACGCGCGGCAAGCTTTCTAGACCAT

BO09996.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14969-RA 948 CG14969-PA 1..945 17..961 4725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14969-RA 1636 CG14969-RA 363..1307 17..961 4725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3334227..3334557 347..17 1655 100 Minus
3L 28110227 3L 3333448..3333693 961..716 1230 100 Minus
3L 28110227 3L 3333984..3334171 535..348 940 100 Minus
3L 28110227 3L 3333745..3333925 716..536 905 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:20:48 has no hits.

BO09996.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:06 Download gff for BO09996.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 1..948 17..965 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:54 Download gff for BO09996.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 363..1310 17..965 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:25 Download gff for BO09996.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 363..1307 17..963 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:06 Download gff for BO09996.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 363..1310 17..965 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:50 Download gff for BO09996.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 363..1307 17..963 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:50 Download gff for BO09996.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3333446..3333692 717..963 99 <- Minus
3L 3333745..3333925 536..716 100 <- Minus
3L 3333984..3334171 348..535 100 <- Minus
3L 3334227..3334557 17..347 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:25 Download gff for BO09996.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3333446..3333692 717..963 99 <- Minus
arm_3L 3333745..3333925 536..716 100 <- Minus
arm_3L 3333984..3334171 348..535 100 <- Minus
arm_3L 3334227..3334557 17..347 100   Minus

BO09996.pep Sequence

Translation from 16 to 979

> BO09996.pep
MRSYIALLGLILTLSGQFNMLLAGKKHSCEKLLADLGDAQSKFIYCATTK
SVPVNLCEGCVDLYRNLTNDYGNLIANANCSKRYLNSDRINIVATTQGIL
TSLWQKANCENCFRDNFWIVYSDNSTKLQNCLESASSDLVCFKCKNDYVS
LNDFYLSMEKKVGGSVCFDLQDNMNRTRLNWSKTLKCCQREVKLTNFLIA
VGVVVLLPIFTFYITAVVVTKRREANHGLLNEQEPELDAPSTSTLITAAV
LSTSTEDPVAISARTEKIANVLIGAGTHLLDESSDEEPPRGKKVAHSPAS
DYSSDDEPLEKPKRAASFLDH

BO09996.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14969-PA 315 CG14969-PA 1..315 1..315 1638 100 Plus