Clone Sequence Records
BO09996.3prime Sequence
919 bp (852 high quality bases) assembled on 2006-04-19
> BO09996.3prime
ATGGTCTAGAAAGCTTGCCGCGCGTTTGGGCTTTTCAAGAGGCTCATCGT
CACTGGAGTAGTCGGATGCGGGACTGTGAGCAACCTTTTTCCCCCTAGGA
GGTTCTTCATCACTGGACTCGTCCAACAGGTGTGTTCCAGCACCGATCAA
TACATTGGCGATCTTTTCTGTTCGGGCGGAGATTGCAACAGGATCCTCTG
TTGAAGTGGACAGCACGGCAGCCGTGATAAGCGTCGACGTGGAGGGCGCG
TCCAGTTCAGGTTCCTGCTCATTGAGCAAGCCATGATTGGCCTCCCGCCG
CTTGGTCACTACAACTGCCGTAATATAGAAGGTGAAAATGGGCAGCAGGA
CAACTACGCCAACGGCGATGAGAAAATTGGTCAGCTTCACCTCGCGTTGA
CAGCATTTCAGCGTTTTCGACCAATTCAGACGAGTCCGGTTCATATTGTC
CTGCAGATCGAAGCACACACTTCCACCGACTTTCTTTTCCATGCTAAGGT
AGAAATCATTTAGACTCACGTAATCATTTTTGCACTTGAAGCAAACTAAA
TCCGAACTAGCAGATTCTAAGCAATTTTGCAACTTTGTTGAGTTATCGCT
GTATACAATCCAAAAATTATCCCTGAAGCAATTTTCGCAGTTGGCCTTTT
GCCACAGGCTAGTTAGGATTCCTTGGGTGGTAGCCACTATATTGATCCTG
TCCGAGTTCAGATAACGCTTGGAACAGTTGGCGTTCGCAATTAGGTTTCC
GTAATCATTGGTGAGATTGCGGTAGAGATCGACGCAGCCCTCACACAAAT
TCACGGGCACTGATTTTGTGGTGGCGCAGTAGATGAACTTGCTCTGTGCA
TCGCCCAGATCGGCGAGCAATTTCTCGCANGAATGTTTCTTCCCGGCCAG
CAGCATGTTAAACTGTCCA
BO09996.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14969-PA | 948 | CG14969-RA | 45..945 | 919..19 | 4461 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14969-RA | 1636 | CG14969-RA | 407..1307 | 919..19 | 4479 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3334227..3334513 | 633..919 | 1409 | 99.3 | Plus |
3L | 28110227 | 3L | 3333448..3333693 | 19..264 | 1230 | 100 | Plus |
3L | 28110227 | 3L | 3333984..3334171 | 445..632 | 940 | 100 | Plus |
3L | 28110227 | 3L | 3333745..3333925 | 264..444 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:01:06 has no hits.
BO09996.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:23 Download gff for
BO09996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-PA | 46..948 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:05 Download gff for
BO09996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-PA | 46..948 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:30:16 Download gff for
BO09996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 408..1310 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:12:29 Download gff for
BO09996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 408..1310 | 15..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:12:29 Download gff for
BO09996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3333445..3333692 | 15..263 | 99 | <- | Plus |
3L | 3333745..3333925 | 264..444 | 100 | <- | Plus |
3L | 3333984..3334171 | 445..632 | 100 | <- | Plus |
3L | 3334227..3334512 | 633..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:30:16 Download gff for
BO09996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3334227..3334512 | 633..918 | 99 | | Plus |
arm_3L | 3333445..3333692 | 15..263 | 99 | <- | Plus |
arm_3L | 3333745..3333925 | 264..444 | 100 | <- | Plus |
arm_3L | 3333984..3334171 | 445..632 | 100 | <- | Plus |
BO09996.5prime Sequence
934 bp (809 high quality bases) assembled on 2006-04-19
> BO09996.5prime
GAAGTTATCAGTCGACATGCGGAGTTACATTGCACTCTTGGGGCTTATCC
TAACTCTAAGTGGACAGTTTAACATGCTGCTGGCCGGGAAGAAACATTCC
TGCGAGAAATTGCTCGCCGATCTTGGCGATGCACAGAGCAAGTTCATCTA
CTGCGCCACCACAAAATCAGTGCCCGTGAATTTGTGTGAGGGCTGCGTCG
ATCTCTACCGCAATCTCACCAATGATTACGGAAACCTAATTGCGAACGCC
AACTGTTCCAAGCGTTATCTGAACTCGGACAGGATCAATATAGTGGCTAC
CACCCAAGGAATCCTAACTAGCCTGTGGCAAAAGGCCAACTGCGAAAATT
GCTTCAGGGATAATTTTTGGATTGTATACAGCGATAACTCAACAAAGTTG
CAAAATTGCTTAGAATCTGCTAGTTCGGATTTAGTTTGCTTCAAGTGCAA
AAATGATTACGTGAGTCTAAATGATTTCTACCTTAGCATGGAAAAGAAAG
TCGGTGGAAGTGTGTGCTTCGATCTGCAGGACAATATGAACCGGACTCGT
CTGAATTGGTCGAAAACGCTGAAATGCTGTCAACGCGAGGTGAAGCTGAC
CAATTTTCTCATCGCCGTTGGCGTAGTTGTCCTGCTGCCCATTTTCACCT
TCTATATTACGGCAGTTGTAGTGACCAAGCGGCGGGAGGCCAATCATGGC
TTGCTCAATGAGCAGGAACCTGAACTGGACGCGCCCTCCACGTCGACGCT
TATCACGGCTGCCGTGCTGTCCACTTCAACAGAGGATCCTGTTGCAATCT
CCGCCCGAACAGAAAAGATCGCCAATGTATTGATCGGTGCTGGGACACAC
CTGTTGAACGAGTCCAGTGATGAAGAACCTCCTAGGGGGAAAAAAGGTTG
CTCACAGTCCCGCATCCGACTACTCCAGTGACGA
BO09996.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14969-PA | 948 | CG14969-RA | 1..878 | 17..894 | 4340 | 99.7 | Plus |
CG14969-PA | 948 | CG14969-RA | 874..917 | 891..934 | 220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14969-RA | 1636 | CG14969-RA | 363..1279 | 17..934 | 4535 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3334227..3334557 | 347..17 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 3333476..3333693 | 934..716 | 1015 | 98.6 | Minus |
3L | 28110227 | 3L | 3333984..3334171 | 535..348 | 940 | 100 | Minus |
3L | 28110227 | 3L | 3333745..3333925 | 716..536 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:47:12 has no hits.
BO09996.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:24 Download gff for
BO09996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-PA | 1..916 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:06 Download gff for
BO09996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-PA | 1..916 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:10:46 Download gff for
BO09996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 363..1278 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:49 Download gff for
BO09996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 363..1278 | 17..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:49 Download gff for
BO09996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3333477..3333692 | 717..933 | 98 | <- | Minus |
3L | 3333745..3333925 | 536..716 | 100 | <- | Minus |
3L | 3333984..3334171 | 348..535 | 100 | <- | Minus |
3L | 3334227..3334557 | 17..347 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:10:46 Download gff for
BO09996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3333477..3333692 | 717..933 | 98 | <- | Minus |
arm_3L | 3333745..3333925 | 536..716 | 100 | <- | Minus |
arm_3L | 3333984..3334171 | 348..535 | 100 | <- | Minus |
arm_3L | 3334227..3334557 | 17..347 | 100 | | Minus |
BO09996.complete Sequence
979 bp (979 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631629
> BO09996.complete
GAAGTTATCAGTCGACATGCGGAGTTACATTGCACTCTTGGGGCTTATCC
TAACTCTAAGTGGACAGTTTAACATGCTGCTGGCCGGGAAGAAACATTCC
TGCGAGAAATTGCTCGCCGATCTTGGCGATGCACAGAGCAAGTTCATCTA
CTGCGCCACCACAAAATCAGTGCCCGTGAATTTGTGTGAGGGCTGCGTCG
ATCTCTACCGCAATCTCACCAATGATTACGGAAACCTAATTGCGAACGCC
AACTGTTCCAAGCGTTATCTGAACTCGGACAGGATCAATATAGTGGCTAC
CACCCAAGGAATCCTAACTAGCCTGTGGCAAAAGGCCAACTGCGAAAATT
GCTTCAGGGATAATTTTTGGATTGTATACAGCGATAACTCAACAAAGTTG
CAAAATTGCTTAGAATCTGCTAGTTCGGATTTAGTTTGCTTCAAGTGCAA
AAATGATTACGTGAGTCTAAATGATTTCTACCTTAGCATGGAAAAGAAAG
TCGGTGGAAGTGTGTGCTTCGATCTGCAGGACAATATGAACCGGACTCGT
CTGAATTGGTCGAAAACGCTGAAATGCTGTCAACGCGAGGTGAAGCTGAC
CAATTTTCTCATCGCCGTTGGCGTAGTTGTCCTGCTGCCCATTTTCACCT
TCTATATTACGGCAGTTGTAGTGACCAAGCGGCGGGAGGCCAATCATGGC
TTGCTCAATGAGCAGGAACCTGAACTGGACGCGCCCTCCACGTCGACGCT
TATCACGGCTGCCGTGCTGTCCACTTCAACAGAGGATCCTGTTGCAATCT
CCGCCCGAACAGAAAAGATCGCCAATGTATTGATCGGTGCTGGAACACAC
CTGTTGGACGAGTCCAGTGATGAAGAACCTCCTAGGGGGAAAAAGGTTGC
TCACAGTCCCGCATCCGACTACTCCAGTGACGATGAGCCTCTTGAAAAGC
CCAAACGCGCGGCAAGCTTTCTAGACCAT
BO09996.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14969-RA | 948 | CG14969-PA | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14969-RA | 1636 | CG14969-RA | 363..1307 | 17..961 | 4725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3334227..3334557 | 347..17 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 3333448..3333693 | 961..716 | 1230 | 100 | Minus |
3L | 28110227 | 3L | 3333984..3334171 | 535..348 | 940 | 100 | Minus |
3L | 28110227 | 3L | 3333745..3333925 | 716..536 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:20:48 has no hits.
BO09996.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:06 Download gff for
BO09996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 1..948 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:54 Download gff for
BO09996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 363..1310 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:25 Download gff for
BO09996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 363..1307 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:06 Download gff for
BO09996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 363..1310 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:50 Download gff for
BO09996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 363..1307 | 17..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:50 Download gff for
BO09996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3333446..3333692 | 717..963 | 99 | <- | Minus |
3L | 3333745..3333925 | 536..716 | 100 | <- | Minus |
3L | 3333984..3334171 | 348..535 | 100 | <- | Minus |
3L | 3334227..3334557 | 17..347 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:25 Download gff for
BO09996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3333446..3333692 | 717..963 | 99 | <- | Minus |
arm_3L | 3333745..3333925 | 536..716 | 100 | <- | Minus |
arm_3L | 3333984..3334171 | 348..535 | 100 | <- | Minus |
arm_3L | 3334227..3334557 | 17..347 | 100 | | Minus |
BO09996.pep Sequence
Translation from 16 to 979
> BO09996.pep
MRSYIALLGLILTLSGQFNMLLAGKKHSCEKLLADLGDAQSKFIYCATTK
SVPVNLCEGCVDLYRNLTNDYGNLIANANCSKRYLNSDRINIVATTQGIL
TSLWQKANCENCFRDNFWIVYSDNSTKLQNCLESASSDLVCFKCKNDYVS
LNDFYLSMEKKVGGSVCFDLQDNMNRTRLNWSKTLKCCQREVKLTNFLIA
VGVVVLLPIFTFYITAVVVTKRREANHGLLNEQEPELDAPSTSTLITAAV
LSTSTEDPVAISARTEKIANVLIGAGTHLLDESSDEEPPRGKKVAHSPAS
DYSSDDEPLEKPKRAASFLDH
BO09996.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14969-PA | 315 | CG14969-PA | 1..315 | 1..315 | 1638 | 100 | Plus |