Clone BO10005 Report

Search the DGRC for BO10005

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:100
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG5989-RA
Protein status:BO10005.pep: validated full length
Sequenced Size:1342

Clone Sequence Records

BO10005.3prime Sequence

907 bp (822 high quality bases) assembled on 2006-04-19

> BO10005.3prime
ATGGTCTAGAAAGCTTGCAGTGGGGCACTTGCCGTAGATGGTCTTCCAGT
TGTTGGGATGGTTGTAGCCCAGCAGGATGGGCAAGTGCAGGAACAGCGTG
ATATGTTCGCCTTGTATCGACGTGGACACCTTGACCCACTTCCGCAGCCA
CTCGATCATGGCCTCGCTGCTCAGGCTGTCGGGATTCAATCCGCGCAGAT
AGCAGGAGTAGCGCAAAGCATCCGGTGTCAGGTTGTGAACGCCACCCTCG
CGGGTTATGGCCTGGTCCATGTAGTGCACCAGGAAGGCGTGCTCGTGGAG
CCGATGTCGCTTGAAGATGCTACTGGGCAGTCCATGAAGGTTGACTAGGT
TTCTAACGTGCTTCCGCGACATTCCCAGCAGGGAATATGGTCCTTCGGCG
AATATGTCTTTGACATCGATGAGCATCTCAGGCGTGGGGTGTGTGCCGCT
GCCCAGCTGGCCCAGGATGTCAGCAAAAGCCGAGTGCTTGGGATGCGATG
CCGTCGCTTTGAGCTTGTCCTGCAGGCAGCGAAAGACGTCCTTGTTATTG
CATAATCGCCGCTTCATGTAGTAGCTCTGGAACTCGGAGCGCTGCTGCGG
AGTCCAGAAATGGGCAGTGAGAAAGGAGCGGGGGTAATAAAAGACGAGGG
GAAAGAACGCATAGCCCACCATGGGCAGGGAGCAGCCGATCAGAGCTGGT
GCCACCTTCATCATGTCCCTTGGCATCTGCATGTACAGCTCCAGCTCCTG
GCGATTCAAAGCTCTTATGCCTTGAGGCGAATCATTGGCAATGCGGGCAA
TCTTGAGGAAACGTTTCATGTCGCCAAAAAAGTCCTTGACGCCATCGAAG
AACACCCTGTACAACTGCATGGCCTTGGGGGAGTTCTTTTCGAGCACTTT
GTCGTAG

BO10005.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-PA 1311 CG5989-RA 420..1308 907..19 4420 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-RC 1534 CG5989-RC 539..1427 907..19 4430 99.9 Minus
CG5989-RB 1561 CG5989-RB 566..1454 907..19 4430 99.9 Minus
CG5989-RA 1567 CG5989-RA 572..1460 907..19 4430 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8602518..8602853 19..354 1680 100 Plus
3L 28110227 3L 8602915..8603203 355..643 1445 100 Plus
3L 28110227 3L 8603265..8603528 644..907 1305 99.6 Plus
Blast to na_te.dros performed on 2015-02-12 03:55:28 has no hits.

BO10005.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:30 Download gff for BO10005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-PA 420..1311 16..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:12 Download gff for BO10005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-PA 420..1311 16..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:17:28 Download gff for BO10005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 572..1465 13..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:06 Download gff for BO10005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 572..1465 13..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:06 Download gff for BO10005.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8602513..8602853 13..354 99 <- Plus
3L 8602915..8603203 355..643 100 <- Plus
3L 8603265..8603528 644..907 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:17:28 Download gff for BO10005.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8595613..8595953 13..354 99 <- Plus
arm_3L 8596015..8596303 355..643 100 <- Plus
arm_3L 8596365..8596628 644..907 99   Plus

BO10005.5prime Sequence

931 bp (849 high quality bases) assembled on 2006-04-19

> BO10005.5prime
GAAGTTATCAGTCGACATGGCGTTGGCGCTGCGCGTTGCCCGATGCGCCG
CGATTCCGGCCAACTGTTGGCCCCGCGATCGCCGGCGACTGTTACACCTG
TGCAGCAGCGCCAGCGATAAGAGGCCAACAGCTTTCTGCAGCAGGAACTA
CGCAACGAAGCCCGAAGCAGCGGTTCCACCACAAATCAAGCGAAATGTGG
CCGCCGAGATAACCAGCGTGGGTAAGGTCATCTACGAAACGGGCTGGGAT
GCCAACAAGCCCATTGAAAAGCCAAAGGTCCGGCCCAGCAGCTCGTCGTC
CACACAGCCGACGCCGTCTAAGAAACCCGAAGACGAGAAGCGCAAGGAGC
TGGACACTGTGAAATCGAAACGGGATCAGATGCGAGACAATATGCAGGAC
TACATATTCACCCGGTACTTCAACTATGTGAAGAACTACGACAAAGTGCT
CGAAAAGAACTTCCCCAAGGCCATGCAGTTGTACAGGGTGTTCTTCGATG
GCGTCAAGGACTTTTTTGGCGACATGAAACGTTTCCTCAAGATTGCCCGC
ATTGCCAATGATTCGCCTCAAGGCATAAGAGCTTTGAATCGCCAGGAGCT
GGAGCTGTACATGCAGATGCCAAGGGACATGATGAAGGTGGCACCAGCTC
TGATCGGCTGCTCCCTGCCCATGGTGGGCTATGCGTTCTTTCCCCTCGTC
TTTTATTACCCCCGCTCCTTTCTCACTGCCCATTTCTGGACTCCGCAGCA
GCGCTCCGAGTTCCAGAGCTACTACATGAAGCGGCGATTATGCAATAACA
AGGACGTCTTTCGCTGCCTGCAGGACAAGCTCAAAGCGACGGCATCGCAT
CCCAAGCACTCGGCTTTTGCTGACATCCTGGGCCAGCTGGGCAGCGGCAC
ACACCCCACGCCTGAGATGCTCATCGATGTC

BO10005.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-PA 1311 CG5989-RA 1..915 17..931 4575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-RA 1567 CG5989-RA 153..1067 17..931 4575 100 Plus
CG5989-RB 1561 CG5989-RB 153..1061 17..931 4475 99.3 Plus
CG5989-RC 1534 CG5989-RC 241..1034 138..931 3970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8603265..8603858 699..106 2970 100 Minus
3L 28110227 3L 8602972..8603203 931..700 1160 100 Minus
3L 28110227 3L 8603906..8603997 108..17 460 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:23:27 has no hits.

BO10005.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:31 Download gff for BO10005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-PA 1..915 17..931 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:14 Download gff for BO10005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-PA 1..915 17..931 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:33:39 Download gff for BO10005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 149..1067 9..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:53:33 Download gff for BO10005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 149..1067 9..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:53:33 Download gff for BO10005.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8602972..8603203 700..931 100 <- Minus
3L 8603265..8603855 109..699 100 <- Minus
3L 8603906..8604001 9..108 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:33:39 Download gff for BO10005.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8597006..8597101 9..108 96   Minus
arm_3L 8596072..8596303 700..931 100 <- Minus
arm_3L 8596365..8596955 109..699 100 <- Minus

BO10005.complete Sequence

1342 bp (1342 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631630

> BO10005.complete
GAAGTTATCAGTCGACATGGCGTTGGCGCTGCGCGTTGCCCGATGCGCCG
CGATTCCGGCCAACTGTTGGCCCCGCGATCGCCGGCGACTGTTACACCTG
TGCAGCAGCGCCAGCGATAAGAGGCCAACAGCTTTCTGCAGCAGGAACTA
CGCAACGAAGCCCGAAGCAGCGGTTCCACCACAAATCAAGCGAAATGTGG
CCGCCGAGATAACCAGCGTGGGTAAGGTCATCTACGAAACGGGCTGGGAT
GCCAACAAGCCCATTGAAAAGCCAAAGGTCCGGCCCAGCAGCTCGTCGTC
CACACAGCCGACGCCGTCTAAGAAACCCGAAGACGAGAAGCGCAAGGAGC
TGGACACTGTGAAATCGAAACGGGATCAGATGCGAGACAATATGCAGGAC
TACATATTCACCCGGTACTTCAACTATGTGAAGAACTACGACAAAGTGCT
CGAAAAGAACTTCCCCAAGGCCATGCAGTTGTACAGGGTGTTCTTCGATG
GCGTCAAGGACTTTTTTGGCGACATGAAACGTTTCCTCAAGATTGCCCGC
ATTGCCAATGATTCGCCTCAAGGCATAAGAGCTTTGAATCGCCAGGAGCT
GGAGCTGTACATGCAGATGCCAAGGGACATGATGAAGGTGGCACCAGCTC
TGATCGGCTGCTCCCTGCCCATGGTGGGCTATGCGTTCTTTCCCCTCGTC
TTTTATTACCCCCGCTCCTTTCTCACTGCCCATTTCTGGACTCCGCAGCA
GCGCTCCGAGTTCCAGAGCTACTACATGAAGCGGCGATTATGCAATAACA
AGGACGTCTTTCGCTGCCTGCAGGACAAGCTCAAAGCGACGGCATCGCAT
CCCAAGCACTCGGCTTTTGCTGACATCCTGGGCCAGCTGGGCAGCGGCAC
ACACCCCACGCCTGAGATGCTCATCGATGTCAAAGACATATTCGCCGAAG
GACCATATTCCCTGCTGGGAATGTCGCGGAAGCACGTTAGAAACCTAGTC
AACCTTCATGGACTGCCCAGTAGCATCTTCAAGCGACATCGGCTCCACGA
GCACGCCTTCCTGGTGCACTACATGGACCAGGCCATAACCCGCGAGGGTG
GCGTTCACAACCTGACACCGGATGCTTTGCGCTACTCCTGCTATCTGCGC
GGATTGAATCCCGACAGCCTGAGCAGCGAGGCCATGATCGAGTGGCTGCG
GAAGTGGGTCAAGGTGTCCACGTCGATACAAGGCGAACATATCACGCTGT
TCCTGCACTTGCCCATCCTGCTGGGCTACAACCATCCCAACAACTGGAAG
ACCATCTACGGCAAGTGCCCCACTGCAAGCTTTCTAGACCAT

BO10005.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-RA 1311 CG5989-PA 1..1308 17..1324 6540 100 Plus
CG5989-RB 1305 CG5989-PB 1..1302 17..1324 6415 99.5 Plus
CG5989-RC 1278 CG5989-PC 89..1275 138..1324 5935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-RA 1567 CG5989-RA 153..1460 17..1324 6540 100 Plus
CG5989-RB 1561 CG5989-RB 153..1454 17..1324 6415 99.5 Plus
CG5989-RC 1534 CG5989-RC 241..1427 138..1324 5935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8603265..8603858 699..106 2970 100 Minus
3L 28110227 3L 8602518..8602853 1324..989 1680 100 Minus
3L 28110227 3L 8602915..8603203 988..700 1445 100 Minus
3L 28110227 3L 8603906..8603997 108..17 460 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:33:13 has no hits.

BO10005.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:53 Download gff for BO10005.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 1..1311 17..1327 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:43 Download gff for BO10005.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 145..1461 9..1330 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:00:04 Download gff for BO10005.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 153..1460 17..1326 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:53 Download gff for BO10005.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 145..1461 9..1330 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:06 Download gff for BO10005.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 153..1460 17..1326 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:06 Download gff for BO10005.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8602915..8603203 700..988 100 <- Minus
3L 8602515..8602853 989..1326 99 <- Minus
3L 8603265..8603855 109..699 100 <- Minus
3L 8603906..8603997 17..108 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:00:04 Download gff for BO10005.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8595615..8595953 989..1326 99 <- Minus
arm_3L 8596015..8596303 700..988 100 <- Minus
arm_3L 8596365..8596955 109..699 100 <- Minus
arm_3L 8597006..8597097 17..108 100   Minus

BO10005.pep Sequence

Translation from 16 to 1342

> BO10005.pep
MALALRVARCAAIPANCWPRDRRRLLHLCSSASDKRPTAFCSRNYATKPE
AAVPPQIKRNVAAEITSVGKVIYETGWDANKPIEKPKVRPSSSSSTQPTP
SKKPEDEKRKELDTVKSKRDQMRDNMQDYIFTRYFNYVKNYDKVLEKNFP
KAMQLYRVFFDGVKDFFGDMKRFLKIARIANDSPQGIRALNRQELELYMQ
MPRDMMKVAPALIGCSLPMVGYAFFPLVFYYPRSFLTAHFWTPQQRSEFQ
SYYMKRRLCNNKDVFRCLQDKLKATASHPKHSAFADILGQLGSGTHPTPE
MLIDVKDIFAEGPYSLLGMSRKHVRNLVNLHGLPSSIFKRHRLHEHAFLV
HYMDQAITREGGVHNLTPDALRYSCYLRGLNPDSLSSEAMIEWLRKWVKV
STSIQGEHITLFLHLPILLGYNHPNNWKTIYGKCPTASFLDH

BO10005.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-PA 436 CG5989-PA 1..436 1..436 2333 100 Plus
CG5989-PB 434 CG5989-PB 1..434 1..436 2312 99.5 Plus
CG5989-PC 425 CG5989-PC 1..425 1..436 2252 97.5 Plus