Clone Sequence Records
BO10005.3prime Sequence
907 bp (822 high quality bases) assembled on 2006-04-19
> BO10005.3prime
ATGGTCTAGAAAGCTTGCAGTGGGGCACTTGCCGTAGATGGTCTTCCAGT
TGTTGGGATGGTTGTAGCCCAGCAGGATGGGCAAGTGCAGGAACAGCGTG
ATATGTTCGCCTTGTATCGACGTGGACACCTTGACCCACTTCCGCAGCCA
CTCGATCATGGCCTCGCTGCTCAGGCTGTCGGGATTCAATCCGCGCAGAT
AGCAGGAGTAGCGCAAAGCATCCGGTGTCAGGTTGTGAACGCCACCCTCG
CGGGTTATGGCCTGGTCCATGTAGTGCACCAGGAAGGCGTGCTCGTGGAG
CCGATGTCGCTTGAAGATGCTACTGGGCAGTCCATGAAGGTTGACTAGGT
TTCTAACGTGCTTCCGCGACATTCCCAGCAGGGAATATGGTCCTTCGGCG
AATATGTCTTTGACATCGATGAGCATCTCAGGCGTGGGGTGTGTGCCGCT
GCCCAGCTGGCCCAGGATGTCAGCAAAAGCCGAGTGCTTGGGATGCGATG
CCGTCGCTTTGAGCTTGTCCTGCAGGCAGCGAAAGACGTCCTTGTTATTG
CATAATCGCCGCTTCATGTAGTAGCTCTGGAACTCGGAGCGCTGCTGCGG
AGTCCAGAAATGGGCAGTGAGAAAGGAGCGGGGGTAATAAAAGACGAGGG
GAAAGAACGCATAGCCCACCATGGGCAGGGAGCAGCCGATCAGAGCTGGT
GCCACCTTCATCATGTCCCTTGGCATCTGCATGTACAGCTCCAGCTCCTG
GCGATTCAAAGCTCTTATGCCTTGAGGCGAATCATTGGCAATGCGGGCAA
TCTTGAGGAAACGTTTCATGTCGCCAAAAAAGTCCTTGACGCCATCGAAG
AACACCCTGTACAACTGCATGGCCTTGGGGGAGTTCTTTTCGAGCACTTT
GTCGTAG
BO10005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5989-PA | 1311 | CG5989-RA | 420..1308 | 907..19 | 4420 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5989-RC | 1534 | CG5989-RC | 539..1427 | 907..19 | 4430 | 99.9 | Minus |
CG5989-RB | 1561 | CG5989-RB | 566..1454 | 907..19 | 4430 | 99.9 | Minus |
CG5989-RA | 1567 | CG5989-RA | 572..1460 | 907..19 | 4430 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8602518..8602853 | 19..354 | 1680 | 100 | Plus |
3L | 28110227 | 3L | 8602915..8603203 | 355..643 | 1445 | 100 | Plus |
3L | 28110227 | 3L | 8603265..8603528 | 644..907 | 1305 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:55:28 has no hits.
BO10005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:30 Download gff for
BO10005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-PA | 420..1311 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:12 Download gff for
BO10005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-PA | 420..1311 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:17:28 Download gff for
BO10005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 572..1465 | 13..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:06 Download gff for
BO10005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 572..1465 | 13..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:06 Download gff for
BO10005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8602513..8602853 | 13..354 | 99 | <- | Plus |
3L | 8602915..8603203 | 355..643 | 100 | <- | Plus |
3L | 8603265..8603528 | 644..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:17:28 Download gff for
BO10005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8595613..8595953 | 13..354 | 99 | <- | Plus |
arm_3L | 8596015..8596303 | 355..643 | 100 | <- | Plus |
arm_3L | 8596365..8596628 | 644..907 | 99 | | Plus |
BO10005.5prime Sequence
931 bp (849 high quality bases) assembled on 2006-04-19
> BO10005.5prime
GAAGTTATCAGTCGACATGGCGTTGGCGCTGCGCGTTGCCCGATGCGCCG
CGATTCCGGCCAACTGTTGGCCCCGCGATCGCCGGCGACTGTTACACCTG
TGCAGCAGCGCCAGCGATAAGAGGCCAACAGCTTTCTGCAGCAGGAACTA
CGCAACGAAGCCCGAAGCAGCGGTTCCACCACAAATCAAGCGAAATGTGG
CCGCCGAGATAACCAGCGTGGGTAAGGTCATCTACGAAACGGGCTGGGAT
GCCAACAAGCCCATTGAAAAGCCAAAGGTCCGGCCCAGCAGCTCGTCGTC
CACACAGCCGACGCCGTCTAAGAAACCCGAAGACGAGAAGCGCAAGGAGC
TGGACACTGTGAAATCGAAACGGGATCAGATGCGAGACAATATGCAGGAC
TACATATTCACCCGGTACTTCAACTATGTGAAGAACTACGACAAAGTGCT
CGAAAAGAACTTCCCCAAGGCCATGCAGTTGTACAGGGTGTTCTTCGATG
GCGTCAAGGACTTTTTTGGCGACATGAAACGTTTCCTCAAGATTGCCCGC
ATTGCCAATGATTCGCCTCAAGGCATAAGAGCTTTGAATCGCCAGGAGCT
GGAGCTGTACATGCAGATGCCAAGGGACATGATGAAGGTGGCACCAGCTC
TGATCGGCTGCTCCCTGCCCATGGTGGGCTATGCGTTCTTTCCCCTCGTC
TTTTATTACCCCCGCTCCTTTCTCACTGCCCATTTCTGGACTCCGCAGCA
GCGCTCCGAGTTCCAGAGCTACTACATGAAGCGGCGATTATGCAATAACA
AGGACGTCTTTCGCTGCCTGCAGGACAAGCTCAAAGCGACGGCATCGCAT
CCCAAGCACTCGGCTTTTGCTGACATCCTGGGCCAGCTGGGCAGCGGCAC
ACACCCCACGCCTGAGATGCTCATCGATGTC
BO10005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5989-PA | 1311 | CG5989-RA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:23:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5989-RA | 1567 | CG5989-RA | 153..1067 | 17..931 | 4575 | 100 | Plus |
CG5989-RB | 1561 | CG5989-RB | 153..1061 | 17..931 | 4475 | 99.3 | Plus |
CG5989-RC | 1534 | CG5989-RC | 241..1034 | 138..931 | 3970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:23:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8603265..8603858 | 699..106 | 2970 | 100 | Minus |
3L | 28110227 | 3L | 8602972..8603203 | 931..700 | 1160 | 100 | Minus |
3L | 28110227 | 3L | 8603906..8603997 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:23:27 has no hits.
BO10005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:31 Download gff for
BO10005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-PA | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:14 Download gff for
BO10005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-PA | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:33:39 Download gff for
BO10005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 149..1067 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:53:33 Download gff for
BO10005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 149..1067 | 9..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:53:33 Download gff for
BO10005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8602972..8603203 | 700..931 | 100 | <- | Minus |
3L | 8603265..8603855 | 109..699 | 100 | <- | Minus |
3L | 8603906..8604001 | 9..108 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:33:39 Download gff for
BO10005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8597006..8597101 | 9..108 | 96 | | Minus |
arm_3L | 8596072..8596303 | 700..931 | 100 | <- | Minus |
arm_3L | 8596365..8596955 | 109..699 | 100 | <- | Minus |
BO10005.complete Sequence
1342 bp (1342 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631630
> BO10005.complete
GAAGTTATCAGTCGACATGGCGTTGGCGCTGCGCGTTGCCCGATGCGCCG
CGATTCCGGCCAACTGTTGGCCCCGCGATCGCCGGCGACTGTTACACCTG
TGCAGCAGCGCCAGCGATAAGAGGCCAACAGCTTTCTGCAGCAGGAACTA
CGCAACGAAGCCCGAAGCAGCGGTTCCACCACAAATCAAGCGAAATGTGG
CCGCCGAGATAACCAGCGTGGGTAAGGTCATCTACGAAACGGGCTGGGAT
GCCAACAAGCCCATTGAAAAGCCAAAGGTCCGGCCCAGCAGCTCGTCGTC
CACACAGCCGACGCCGTCTAAGAAACCCGAAGACGAGAAGCGCAAGGAGC
TGGACACTGTGAAATCGAAACGGGATCAGATGCGAGACAATATGCAGGAC
TACATATTCACCCGGTACTTCAACTATGTGAAGAACTACGACAAAGTGCT
CGAAAAGAACTTCCCCAAGGCCATGCAGTTGTACAGGGTGTTCTTCGATG
GCGTCAAGGACTTTTTTGGCGACATGAAACGTTTCCTCAAGATTGCCCGC
ATTGCCAATGATTCGCCTCAAGGCATAAGAGCTTTGAATCGCCAGGAGCT
GGAGCTGTACATGCAGATGCCAAGGGACATGATGAAGGTGGCACCAGCTC
TGATCGGCTGCTCCCTGCCCATGGTGGGCTATGCGTTCTTTCCCCTCGTC
TTTTATTACCCCCGCTCCTTTCTCACTGCCCATTTCTGGACTCCGCAGCA
GCGCTCCGAGTTCCAGAGCTACTACATGAAGCGGCGATTATGCAATAACA
AGGACGTCTTTCGCTGCCTGCAGGACAAGCTCAAAGCGACGGCATCGCAT
CCCAAGCACTCGGCTTTTGCTGACATCCTGGGCCAGCTGGGCAGCGGCAC
ACACCCCACGCCTGAGATGCTCATCGATGTCAAAGACATATTCGCCGAAG
GACCATATTCCCTGCTGGGAATGTCGCGGAAGCACGTTAGAAACCTAGTC
AACCTTCATGGACTGCCCAGTAGCATCTTCAAGCGACATCGGCTCCACGA
GCACGCCTTCCTGGTGCACTACATGGACCAGGCCATAACCCGCGAGGGTG
GCGTTCACAACCTGACACCGGATGCTTTGCGCTACTCCTGCTATCTGCGC
GGATTGAATCCCGACAGCCTGAGCAGCGAGGCCATGATCGAGTGGCTGCG
GAAGTGGGTCAAGGTGTCCACGTCGATACAAGGCGAACATATCACGCTGT
TCCTGCACTTGCCCATCCTGCTGGGCTACAACCATCCCAACAACTGGAAG
ACCATCTACGGCAAGTGCCCCACTGCAAGCTTTCTAGACCAT
BO10005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5989-RA | 1311 | CG5989-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
CG5989-RB | 1305 | CG5989-PB | 1..1302 | 17..1324 | 6415 | 99.5 | Plus |
CG5989-RC | 1278 | CG5989-PC | 89..1275 | 138..1324 | 5935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5989-RA | 1567 | CG5989-RA | 153..1460 | 17..1324 | 6540 | 100 | Plus |
CG5989-RB | 1561 | CG5989-RB | 153..1454 | 17..1324 | 6415 | 99.5 | Plus |
CG5989-RC | 1534 | CG5989-RC | 241..1427 | 138..1324 | 5935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8603265..8603858 | 699..106 | 2970 | 100 | Minus |
3L | 28110227 | 3L | 8602518..8602853 | 1324..989 | 1680 | 100 | Minus |
3L | 28110227 | 3L | 8602915..8603203 | 988..700 | 1445 | 100 | Minus |
3L | 28110227 | 3L | 8603906..8603997 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:33:13 has no hits.
BO10005.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:53 Download gff for
BO10005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 1..1311 | 17..1327 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:43 Download gff for
BO10005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 145..1461 | 9..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:00:04 Download gff for
BO10005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 153..1460 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:53 Download gff for
BO10005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 145..1461 | 9..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:06 Download gff for
BO10005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 153..1460 | 17..1326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:06 Download gff for
BO10005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8602915..8603203 | 700..988 | 100 | <- | Minus |
3L | 8602515..8602853 | 989..1326 | 99 | <- | Minus |
3L | 8603265..8603855 | 109..699 | 100 | <- | Minus |
3L | 8603906..8603997 | 17..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:00:04 Download gff for
BO10005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8595615..8595953 | 989..1326 | 99 | <- | Minus |
arm_3L | 8596015..8596303 | 700..988 | 100 | <- | Minus |
arm_3L | 8596365..8596955 | 109..699 | 100 | <- | Minus |
arm_3L | 8597006..8597097 | 17..108 | 100 | | Minus |
BO10005.pep Sequence
Translation from 16 to 1342
> BO10005.pep
MALALRVARCAAIPANCWPRDRRRLLHLCSSASDKRPTAFCSRNYATKPE
AAVPPQIKRNVAAEITSVGKVIYETGWDANKPIEKPKVRPSSSSSTQPTP
SKKPEDEKRKELDTVKSKRDQMRDNMQDYIFTRYFNYVKNYDKVLEKNFP
KAMQLYRVFFDGVKDFFGDMKRFLKIARIANDSPQGIRALNRQELELYMQ
MPRDMMKVAPALIGCSLPMVGYAFFPLVFYYPRSFLTAHFWTPQQRSEFQ
SYYMKRRLCNNKDVFRCLQDKLKATASHPKHSAFADILGQLGSGTHPTPE
MLIDVKDIFAEGPYSLLGMSRKHVRNLVNLHGLPSSIFKRHRLHEHAFLV
HYMDQAITREGGVHNLTPDALRYSCYLRGLNPDSLSSEAMIEWLRKWVKV
STSIQGEHITLFLHLPILLGYNHPNNWKTIYGKCPTASFLDH
BO10005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5989-PA | 436 | CG5989-PA | 1..436 | 1..436 | 2333 | 100 | Plus |
CG5989-PB | 434 | CG5989-PB | 1..434 | 1..436 | 2312 | 99.5 | Plus |
CG5989-PC | 425 | CG5989-PC | 1..425 | 1..436 | 2252 | 97.5 | Plus |