Clone Sequence Records
BO10006.3prime Sequence
954 bp (753 high quality bases) assembled on 2006-04-19
> BO10006.3prime
ATGGTCTAGAAAGCTTGCGTTCGTAACGACCGAGTATTTTCGGGCGGTGT
ACTGGCTCTGCCTCTGATAGTGTTGCACATTATGCGAGGGCACTAGAATG
TTGCCTGAGGGGCACGGTGTGTCCAGGCAAGGATTACGTAGCGAACATGT
GCGTCCATCACCTTCGTAGCCGGCTGGACAGGAGTCACACTGGGCTCCAT
TCACGGTATCGTGACACTGAACGCCTGGATAGCACATGTGATGGGCGCAG
GTAACGCCCGGCTTGCAGCTCTTGCCATCGCCAATGAAGCCAAGGGGACA
GTGGCCACATCGGGGACCGGCCGCCGAGTCCAAGCACTCCACTCCAGGAT
AACAGGGATTGGCGGAACGGCAGTCGGGCTCGATGCGCAGTTGGTTGTCG
GTGGTGAGGGGATTCTTGCAGCCGGCACAGTTCTCCAGGAGCATACGCAG
GTAGGCAATCTCCTGGCGCTGGTGGGCGACGTCTTCGCGGAGCAGCTTCA
CCAGAGCCAGTAAATCGCTGAGCGATCGTGCGAGGGCGTCTTCGCAATCG
CCATTCAGAACGGGAATATCACCGCGCTCCACGTCCGTTGGCACCTCCTG
GTGTCTGTGATCCACGACTCCTTCCCGGGCGATCGTTGGCTCATACCAGC
CGCGCACATCGCGCTTCTTGTTCTTCTCACGCTCGGTGATCTTGTTGCGC
AGCATGCGACGATTGCCACGACGATGGTTGCCCTTCTGGCAATTGGCCCG
CTGCAGGGAGTGCTCCATGTCCCCGTCGAAGTGAAGGGGATACTTGCGCT
CACGGAACAGCTTGATCACCGGATCGTCCATCTGGGTGTACAGCTTGGCC
AGGTTCATGTCGATGTCGTGATGCGTGCTCGCCTTGCAGTCCACATGGAG
CCGTATGCGATTCTTGGAGAACTGCATTGCCAGGGATCGGATGGTGCTTG
TCTC
BO10006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11326-PD | 1260 | Tsp-RD | 322..1257 | 954..19 | 4605 | 99.6 | Minus |
| CG11326-PC | 1260 | Tsp-RC | 322..1257 | 954..19 | 4605 | 99.6 | Minus |
| CG11326-PE | 1260 | Tsp-RE | 322..1257 | 954..19 | 4605 | 99.6 | Minus |
| CG11326-PA | 3183 | Tsp-RA | 322..1173 | 954..103 | 4185 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp-RE | 2112 | CG11326-RE | 748..1683 | 954..19 | 4635 | 99.7 | Minus |
| Tsp-RC | 2135 | CG11326-RC | 771..1706 | 954..19 | 4635 | 99.7 | Minus |
| Tsp-RD | 2122 | CG11326-RD | 758..1693 | 954..19 | 4635 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6697262..6697459 | 344..541 | 990 | 100 | Plus |
| 2L | 23513712 | 2L | 6699765..6699903 | 540..678 | 695 | 100 | Plus |
| 2L | 23513712 | 2L | 6700181..6700327 | 808..954 | 690 | 98 | Plus |
| 2L | 23513712 | 2L | 6699987..6700117 | 678..808 | 655 | 100 | Plus |
| 2L | 23513712 | 2L | 6690976..6691098 | 104..226 | 615 | 100 | Plus |
| 2L | 23513712 | 2L | 6697010..6697128 | 227..345 | 595 | 100 | Plus |
| 2L | 23513712 | 2L | 6690054..6690143 | 19..108 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:42:45 has no hits.
BO10006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:32 Download gff for
BO10006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-PD | 322..1260 | 15..954 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:15 Download gff for
BO10006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11326-PE | 322..1260 | 15..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:20:22 Download gff for
BO10006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RD | 758..1696 | 15..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:44:06 Download gff for
BO10006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RD | 758..1696 | 15..954 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:44:06 Download gff for
BO10006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6697263..6697457 | 345..539 | 100 | <- | Plus |
| 2L | 6699765..6699902 | 540..677 | 100 | <- | Plus |
| 2L | 6699987..6700116 | 678..807 | 100 | <- | Plus |
| 2L | 6700181..6700327 | 808..954 | 97 | | Plus |
| 2L | 6690051..6690139 | 15..104 | 97 | <- | Plus |
| 2L | 6690977..6691098 | 105..226 | 100 | <- | Plus |
| 2L | 6697010..6697127 | 227..344 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:20:22 Download gff for
BO10006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6700181..6700327 | 808..954 | 97 | | Plus |
| arm_2L | 6699765..6699902 | 540..677 | 100 | <- | Plus |
| arm_2L | 6699987..6700116 | 678..807 | 100 | <- | Plus |
| arm_2L | 6690051..6690139 | 15..104 | 97 | <- | Plus |
| arm_2L | 6690977..6691098 | 105..226 | 100 | <- | Plus |
| arm_2L | 6697010..6697127 | 227..344 | 100 | <- | Plus |
| arm_2L | 6697263..6697457 | 345..539 | 100 | <- | Plus |
BO10006.5prime Sequence
914 bp (749 high quality bases) assembled on 2006-04-19
> BO10006.5prime
GAAGTTATCAGTCGACATGAATTGGACGCGCGTGCTGTTAATCGGGTTGA
CCGCCTTGGCGCTGACATTTGTGGATGTTGCATCACTCTCACTCGATCCA
GTTGCTTCTGCTGAACTGGAGCAGTTTATACGCAAAGGAGATGTGGTCAT
ATCAACGCGACACATTAGACCTCGTCGAAAGTTGCACATATCCATAGAAG
CACTCTTCATGATCGACTTCCCGATGCTGAAGCACAAGATGTCCTTCTTC
CTGGACCGCAAACAGCAGCGGGTAACGTTGGACATTAGTGCGAACGGAGC
CACCGAGTCGCGCAACTTCGAGATACCCAACATCAATGAGACAAGCACCA
TCCGATCCCTGGCACTGCAGTTCTCCAAGAATCGCATAACGCTCCATGTG
GACTGCAAGGCGAGCACGCATCACGACATCGACATGAACCTGGCCAAGCT
GTACACCCAGATGGACGATCCGGTGATCAAGCTGTTCCGTGAGCGCAAGT
ATCCCCTTCACTTCGACGGGGACATGGAGCACTCCCTGCAGCGGGCCAAT
TGCCAGAAGGGCAACCATCGTCGTGGCAATCGTCGCATGCTGCGCAACAA
GATCACCGAGCGTGAGAAGAACAAGAAGCGCGATGTGCGCGGCTGGTATG
AGCCAACGATCGCCCGGGAAGGAGTCGTGGATCACAGACACCAGGAGGTG
CCAACGGACGTGGAGCGCGGTGATATTCCCGTTCTGAATGGCGATTGCGA
AGACGCCCTCGCACGATCGCTCAGCGATTTACTGGCTCTGGTGAAGCTGC
TCCGCGAAGACGTCGCCCACCAGCGCCAGGAGATTGCCTACCTGCGTATG
CTCCTGGAGAACTGTGCCGGCTGCAAGAATCCCCTCACCACCGACAACCA
ACTGCGCATCGAGC
BO10006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11326-PD | 1260 | Tsp-RD | 1..898 | 17..914 | 4490 | 100 | Plus |
| CG11326-PA | 3183 | Tsp-RA | 1..898 | 17..914 | 4490 | 100 | Plus |
| CG11326-PC | 1260 | Tsp-RC | 1..898 | 17..914 | 4490 | 100 | Plus |
| CG11326-PE | 1260 | Tsp-RE | 1..898 | 17..914 | 4490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp-RF | 3892 | CG11326-RF | 576..1473 | 17..914 | 4490 | 100 | Plus |
| Tsp-RE | 2112 | CG11326-RE | 427..1324 | 17..914 | 4490 | 100 | Plus |
| Tsp-RC | 2135 | CG11326-RC | 450..1347 | 17..914 | 4490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6700181..6700501 | 484..164 | 1605 | 100 | Minus |
| 2L | 23513712 | 2L | 6697296..6697459 | 914..751 | 820 | 100 | Minus |
| 2L | 23513712 | 2L | 6699765..6699903 | 752..614 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 6699987..6700117 | 614..484 | 655 | 100 | Minus |
| 2L | 23513712 | 2L | 6701750..6701834 | 101..17 | 425 | 100 | Minus |
| 2L | 23513712 | 2L | 6700553..6700622 | 168..99 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:24:57 has no hits.
BO10006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:32 Download gff for
BO10006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-PA | 1..898 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:16 Download gff for
BO10006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11326-PE | 1..898 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:59:09 Download gff for
BO10006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RC | 446..1347 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:40:22 Download gff for
BO10006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RC | 446..1347 | 9..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:40:22 Download gff for
BO10006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6697296..6697457 | 753..914 | 100 | <- | Minus |
| 2L | 6699765..6699902 | 615..752 | 100 | <- | Minus |
| 2L | 6699987..6700116 | 485..614 | 100 | <- | Minus |
| 2L | 6700181..6700496 | 169..484 | 100 | <- | Minus |
| 2L | 6700553..6700619 | 102..168 | 100 | <- | Minus |
| 2L | 6701750..6701838 | 9..101 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:59:09 Download gff for
BO10006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6700553..6700619 | 102..168 | 100 | <- | Minus |
| arm_2L | 6701750..6701838 | 9..101 | 95 | | Minus |
| arm_2L | 6697296..6697457 | 753..914 | 100 | <- | Minus |
| arm_2L | 6699765..6699902 | 615..752 | 100 | <- | Minus |
| arm_2L | 6699987..6700116 | 485..614 | 100 | <- | Minus |
| arm_2L | 6700181..6700496 | 169..484 | 100 | <- | Minus |
BO10006.complete Sequence
1291 bp assembled on 2007-10-17
GenBank Submission: FJ631631
> BO10006.complete
GAAGTTATCAGTCGACATGAATTGGACGCGCGTGCTGTTAATCGGGTTGA
CCGCCTTGGCGCTGACATTTGTGGATGTTGCATCACTCTCACTCGATCCA
GTTGCTTCTGCTGAACTGGAGCAGTTTATACGCAAAGGAGATGTGGTCAT
ATCAACGCGACACATTAGACCTCGTCGAAAGTTGCACATATCCATAGAAG
CACTCTTCATGATCGACTTCCCGATGCTGAAGCACAAGATGTCCTTCTTC
CTGGACCGCAAACAGCAGCGGGTAACGTTGGACATTAGTGCGAACGGAGC
CACCGAGTCGCGCAACTTCGAGATACCCAACATCAATGAGACAAGCACCA
TCCGATCCCTGGCACTGCAGTTCTCCAAGAATCGCATAACGCTCCATGTG
GACTGCAAGGCGAGCACGCATCACGACATCGACATGAACCTGGCCAAGCT
GTACACCCAGATGGACGATCCGGTGATCAAGCTGTTCCGTGAGCGCAAGT
ATCCCCTTCACTTCGACGGGGACATGGAGCACTCCCTGCAGCGGGCCAAT
TGCCAGAAGGGCAACCATCGTCGTGGCAATCGTCGCATGCTGCGCAACAA
GATCACCGAGCGTGAGAAGAACAAGAAGCGCGATGTGCGCGGCTGGTATG
AGCCAACGATCGCCCGGGAAGGAGTCGTGGATCACAGACACCAGGAGGTG
CCAACGGACGTGGAGCGCGGTGATATTCCCGTTCTGAATGGCGATTGCGA
AGACGCCCTCGCACGATCGCTCAGCGATTTACTGGCTCTGGTGAAGCTGC
TCCGCGAAGACGTCGCCCACCAGCGCCAGGAGATTGCCTACCTGCGTATG
CTCCTGGAGAACTGTGCCGGCTGCAAGAATCCCCTCACCACCGACAACCA
ACTGCGCATCGAGCCCGACTGCCGTTCCGCCAATCCCTGTTATCCTGGAG
TGGAGTGCTTGGACTCGGCGGCCGGTCCCCGATGTGGCCACTGTCCCCTT
GGCTTCATTGGCGATGGCAAGAGCTGCAAGCCGGGCGTTACCTGCGCCCA
TCACATGTGCTATCCAGGCGTTCAGTGTCACGATACCGTGAATGGAGCCC
AGTGTGACTCCTGTCCAGCCGGCTACGAAGGTGATGGACGCACATGTTCG
CTACGTAATCCTTGCCTGGACACACCGTGCCCCTCAGGCAACATTCTAGT
GCCCTCGCATAATGTGCAACACTATCAGAGGCAGAGCCAGTACACCGCCC
GAAAATACTCGGTCGTTACGAACGCAAGCTTTCTAGACCAT
BO10006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp-RE | 1260 | CG11326-PE | 1..1257 | 17..1273 | 6285 | 100 | Plus |
| Tsp-RC | 1260 | CG11326-PC | 1..1257 | 17..1273 | 6285 | 100 | Plus |
| Tsp-RD | 1260 | CG11326-PD | 1..1257 | 17..1273 | 6285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp-RE | 2112 | CG11326-RE | 427..1683 | 17..1273 | 6285 | 100 | Plus |
| Tsp-RC | 2135 | CG11326-RC | 450..1706 | 17..1273 | 6285 | 100 | Plus |
| Tsp-RD | 2122 | CG11326-RD | 437..1693 | 17..1273 | 6285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6700181..6700501 | 484..164 | 1605 | 100 | Minus |
| 2L | 23513712 | 2L | 6697262..6697459 | 948..751 | 990 | 100 | Minus |
| 2L | 23513712 | 2L | 6699765..6699903 | 752..614 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 6699987..6700117 | 614..484 | 655 | 100 | Minus |
| 2L | 23513712 | 2L | 6690976..6691098 | 1188..1066 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 6697010..6697128 | 1065..947 | 595 | 100 | Minus |
| 2L | 23513712 | 2L | 6690054..6690143 | 1273..1184 | 450 | 100 | Minus |
| 2L | 23513712 | 2L | 6701750..6701834 | 101..17 | 425 | 100 | Minus |
| 2L | 23513712 | 2L | 6700553..6700622 | 168..99 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:47:53 has no hits.
BO10006.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:58 Download gff for
BO10006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RE | 1..1260 | 17..1277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:20 Download gff for
BO10006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RE | 477..1740 | 9..1277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:07 Download gff for
BO10006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RD | 437..1693 | 17..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:09 Download gff for
BO10006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RE | 481..1737 | 17..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:33 Download gff for
BO10006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RD | 437..1693 | 17..1275 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:33 Download gff for
BO10006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6697263..6697457 | 753..947 | 100 | <- | Minus |
| 2L | 6699765..6699902 | 615..752 | 100 | <- | Minus |
| 2L | 6699987..6700116 | 485..614 | 100 | <- | Minus |
| 2L | 6690052..6690139 | 1188..1275 | 97 | <- | Minus |
| 2L | 6690977..6691098 | 1066..1187 | 100 | <- | Minus |
| 2L | 6697010..6697127 | 948..1065 | 100 | <- | Minus |
| 2L | 6700181..6700496 | 169..484 | 100 | <- | Minus |
| 2L | 6700553..6700619 | 102..168 | 100 | <- | Minus |
| 2L | 6701750..6701834 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:07 Download gff for
BO10006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6699765..6699902 | 615..752 | 100 | <- | Minus |
| arm_2L | 6699987..6700116 | 485..614 | 100 | <- | Minus |
| arm_2L | 6697010..6697127 | 948..1065 | 100 | <- | Minus |
| arm_2L | 6697263..6697457 | 753..947 | 100 | <- | Minus |
| arm_2L | 6690052..6690139 | 1188..1275 | 97 | <- | Minus |
| arm_2L | 6690977..6691098 | 1066..1187 | 100 | <- | Minus |
| arm_2L | 6700181..6700496 | 169..484 | 100 | <- | Minus |
| arm_2L | 6700553..6700619 | 102..168 | 100 | <- | Minus |
| arm_2L | 6701750..6701834 | 17..101 | 100 | | Minus |
BO10006.pep Sequence
Translation from 16 to 1291
> BO10006.pep
MNWTRVLLIGLTALALTFVDVASLSLDPVASAELEQFIRKGDVVISTRHI
RPRRKLHISIEALFMIDFPMLKHKMSFFLDRKQQRVTLDISANGATESRN
FEIPNINETSTIRSLALQFSKNRITLHVDCKASTHHDIDMNLAKLYTQMD
DPVIKLFRERKYPLHFDGDMEHSLQRANCQKGNHRRGNRRMLRNKITERE
KNKKRDVRGWYEPTIAREGVVDHRHQEVPTDVERGDIPVLNGDCEDALAR
SLSDLLALVKLLREDVAHQRQEIAYLRMLLENCAGCKNPLTTDNQLRIEP
DCRSANPCYPGVECLDSAAGPRCGHCPLGFIGDGKSCKPGVTCAHHMCYP
GVQCHDTVNGAQCDSCPAGYEGDGRTCSLRNPCLDTPCPSGNILVPSHNV
QHYQRQSQYTARKYSVVTNASFLDH
BO10006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp-PE | 419 | CG11326-PE | 1..419 | 1..419 | 2251 | 100 | Plus |
| Tsp-PC | 419 | CG11326-PC | 1..419 | 1..419 | 2251 | 100 | Plus |
| Tsp-PD | 419 | CG11326-PD | 1..419 | 1..419 | 2251 | 100 | Plus |
| Tsp-PF | 1060 | CG11326-PF | 1..391 | 1..391 | 2104 | 100 | Plus |
| Tsp-PA | 1060 | CG11326-PA | 1..391 | 1..391 | 2104 | 100 | Plus |
