Clone Sequence Records
BO10009.3prime Sequence
914 bp (850 high quality bases) assembled on 2006-04-19
> BO10009.3prime
ATGGTCTAGAAAGCTTGCGTAGCAGCACTTGCTGCGGTTGTTGTTGGCGC
CGCTGACCAGCTTGCAGTGCTGCATCTCCGAGCGGCGCGGGCGGTTGGCC
TTGGCCTGGAAGTCGCGCACCTTGTTGGCCCGCTTGATGGCACTGCGGCA
GAGCTGCTGGTGCTCCTTCTTGTTCTTGCTCTTCTGACTCTGACGAGCCA
GCGTCTGCTGCTTCAACTGTACGGCCGCATGGCTATCGAAGCGAGCGTTG
GGGGCACGTTGCTGCTCCTGGAGAGCCTGGCGCTGATCCTGCGGCTCAGC
CTCCGGCTCGGGCTCCTCCCGCTGCTGCGGCACCTCCGTCGACACCCCGA
GATCAAGATTAACAAAACTATCGGTTCCCTCCTGGGTGGACCTAATACTA
TGATAAACGGACATGCAGGACTCCTCCATCAGCACGTTAGCACCCTGGCC
GTGATCCTGACCCTGGTCGCTGCCGCTCGGCGAGGCCACGTACAGCGACT
GGGTCAGCGTGTCATGATCGCCGGCCCCCAGGGCGGGCACACTTCTGGGC
GGGCTGAGGGTGCTGATGCTCAGCGGCCGGGAGACGCGCGAGCGTTGCAG
ATAGTTGCGTTGCTGCTGCGGCCGGGGCCCACTGTACAGGGAACACGAGT
TGACGCCCTGCCGGCGGCGGCAGTTGAACGCCGTGCCAGTGGCCACGGTC
ACCATTGGAGAGGAGGCGTTGTTGGAACCGCCCCGCGGCTGCGACACCTC
CACCACGGAGAGCTCCTCCTCGGAGTCGCTGCGTGGCAGGGAGTCGTCCT
CCTCGTCTTCCTTCTCCACAATGTACCATTCGTCCTCGTCGAAGTCCTCG
TCGACGATCTCGCCGGAGGGCGTCAGCAATTTGGTGATCGCTGGCTGTTG
TTTCGGCTGCTGCT
BO10009.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11347-PD | 1164 | CG11347-RD | 266..1161 | 914..19 | 4455 | 99.8 | Minus |
CG11347-PB | 1164 | CG11347-RB | 266..1161 | 914..19 | 4455 | 99.8 | Minus |
CG11347-PA | 1164 | CG11347-RA | 266..1161 | 914..19 | 4455 | 99.8 | Minus |
CG11347-PC | 822 | CG11347-RC | 32..819 | 806..19 | 3940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DOR-RE | 1906 | CG11347-RE | 646..1541 | 914..19 | 4465 | 99.9 | Minus |
DOR-RA | 2022 | CG11347-RA | 762..1657 | 914..19 | 4465 | 99.9 | Minus |
DOR-RB | 2311 | CG11347-RB | 669..1564 | 914..19 | 4465 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4418780..4419172 | 808..416 | 1965 | 100 | Minus |
3L | 28110227 | 3L | 4419428..4419663 | 416..181 | 1180 | 100 | Minus |
3L | 28110227 | 3L | 4419738..4419901 | 182..19 | 820 | 100 | Minus |
3L | 28110227 | 3L | 4418387..4418494 | 914..807 | 525 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:35:01 has no hits.
BO10009.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:35 Download gff for
BO10009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11347-PB | 266..1164 | 18..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:21 Download gff for
BO10009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11347-PA | 266..1164 | 18..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:13:12 Download gff for
BO10009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DOR-RB | 669..1569 | 13..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:47 Download gff for
BO10009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DOR-RB | 669..1569 | 13..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:47 Download gff for
BO10009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4418387..4418494 | 807..914 | 99 | -> | Minus |
3L | 4418782..4419172 | 416..806 | 100 | -> | Minus |
3L | 4419429..4419663 | 181..415 | 100 | -> | Minus |
3L | 4419740..4419906 | 13..180 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:13:12 Download gff for
BO10009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4418387..4418494 | 807..914 | 99 | -> | Minus |
arm_3L | 4418782..4419172 | 416..806 | 100 | -> | Minus |
arm_3L | 4419429..4419663 | 181..415 | 100 | -> | Minus |
arm_3L | 4419740..4419906 | 13..180 | 98 | | Minus |
BO10009.5prime Sequence
883 bp (729 high quality bases) assembled on 2006-04-19
> BO10009.5prime
GAAGTTATCAGTCGACATGTTAAGCAGCCTCGCCTCGTATCTCTTTGGAT
CAGCTACATCCGATTCCATTAGCCAAGAAGCCAATCCCGCCCAGAACCGA
ACGAACGCCTCGAACGCGAACTCTAGCTCGAGTCCCGGCCCGACCAGCGA
TCCCGCTGCAGGCGATGTAATTGAGGTCACCTCCTCGACGCCCTCGGTAG
CGGGCAGCAGTCGTGGGGCGGTGCGCGCCTCCAACGGCAAGCGGGGCAAG
AACAGGCGTGGCAAGCAGCAGCGGACCAACCAGCAGCAGCGGAAACAACA
GCCAGCGATCACCAAATTGCTGACGCCCTCCGGCGAGATCGTCGACGAGG
ACTTCGACGAGGACGAATGGTACATTGTGGAGAAGGAAGACGAGGAGGAC
GACTCCCTGCCACGCAGCGACTCCGAGGAGGAGCTCTCCGTGGTGGAGGT
GTCGCAGCCGCGGGGCGGTTCCAACAACGCCTCCTCTCCAATGGTGACCG
TGGCCACTGGCACGGCGTTCAACTGCCGCCGCCGGCAGGGCGTCAACTCG
TGTTCCCTGTACAGTGGGCCCCGGCCGCAGCAGCAACGCAACTATCTGCA
ACGCTCGCGCGTCTCCCGGCCGCTGAGCATCAGCACCCTCAGCCCGCCCA
GAAGTGTGCCCGCCCTGGGGGCCGGCGATCATGACACGCTGACCCAGTCG
CTGTACGTGGCCTCGCCGAGCGGCAGCGACCAGGGTCAGGATCACGGCCA
GGGTGCTAACGTGCTGATGGAGGAGTCCTGCATGTCCGTTTATCATAGTA
TTAGGTCCACCCAGGAGGGAACCGATAGTTTTGTTAATCTTGATCTCGGG
GGGTCGACGGAGGTGCCGCAGCAGCGGGAGGAG
BO10009.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11347-PD | 1164 | CG11347-RD | 1..867 | 17..883 | 4310 | 99.8 | Plus |
CG11347-PB | 1164 | CG11347-RB | 1..867 | 17..883 | 4310 | 99.8 | Plus |
CG11347-PA | 1164 | CG11347-RA | 1..867 | 17..883 | 4310 | 99.8 | Plus |
CG11347-PC | 822 | CG11347-RC | 32..525 | 390..883 | 2445 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DOR-RE | 1906 | CG11347-RE | 381..1247 | 17..883 | 4320 | 99.9 | Plus |
DOR-RA | 2022 | CG11347-RA | 497..1363 | 17..883 | 4320 | 99.9 | Plus |
DOR-RB | 2311 | CG11347-RB | 404..1270 | 17..883 | 4320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4418780..4419172 | 388..780 | 1965 | 100 | Plus |
3L | 28110227 | 3L | 4418122..4418494 | 17..389 | 1865 | 100 | Plus |
3L | 28110227 | 3L | 4419428..4419531 | 780..883 | 505 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:10:54 has no hits.
BO10009.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:36 Download gff for
BO10009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11347-PB | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:23 Download gff for
BO10009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11347-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:22 Download gff for
BO10009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DOR-RB | 399..1270 | 11..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:23 Download gff for
BO10009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DOR-RB | 399..1270 | 11..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:23 Download gff for
BO10009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4418117..4418494 | 11..389 | 99 | -> | Plus |
3L | 4418782..4419172 | 390..780 | 100 | -> | Plus |
3L | 4419429..4419531 | 781..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:22 Download gff for
BO10009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4418117..4418494 | 11..389 | 99 | -> | Plus |
arm_3L | 4418782..4419172 | 390..780 | 100 | -> | Plus |
arm_3L | 4419429..4419531 | 781..883 | 99 | | Plus |
BO10009.complete Sequence
1195 bp (1195 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631632
> BO10009.complete
GAAGTTATCAGTCGACATGTTAAGCAGCCTCGCCTCGTATCTCTTTGGAT
CAGCTACATCCGATTCCATTAGCCAAGAAGCCAATCCCGCCCAGAACCGA
ACGAACGCCTCGAACGCGAACTCTAGCTCGAGTCCCGGCCCGACCAGCGA
TCCCGCTGCAGGCGATGTAATTGAGGTCACCTCCTCGACGCCCTCGGTAG
CGGGCAGCAGTCGTGGGGCGGTGCGCGCCTCCAACGGCAAGCGGGGCAAG
AACAGGCGTGGCAAGCAGCAGCGGACCAACCAGCAGCAGCGGAAACAACA
GCCAGCGATCACCAAATTGCTGACGCCCTCCGGCGAGATCGTCGACGAGG
ACTTCGACGAGGACGAATGGTACATTGTGGAGAAGGAAGACGAGGAGGAC
GACTCCCTGCCACGCAGCGACTCCGAGGAGGAGCTCTCCGTGGTGGAGGT
GTCGCAGCCGCGGGGCGGTTCCAACAACGCCTCCTCTCCAATGGTGACCG
TGGCCACTGGCACGGCGTTCAACTGCCGCCGCCGGCAGGGCGTCAACTCG
TGTTCCCTGTACAGTGGGCCCCGGCCGCAGCAGCAACGCAACTATCTGCA
ACGCTCGCGCGTCTCCCGGCCGCTGAGCATCAGCACCCTCAGCCCGCCCA
GAAGTGTGCCCGCCCTGGGGGCCGGCGATCATGACACGCTGACCCAGTCG
CTGTACGTGGCCTCGCCGAGCGGCAGCGACCAGGGTCAGGATCACGGCCA
GGGTGCTAACGTGCTGATGGAGGAGTCCTGCATGTCCGTTTATCATAGTA
TTAGGTCCACCCAGGAGGGAACCGATAGTTTTGTTAATCTTGATCTCGGG
GTGTCGACGGAGGTGCCGCAGCAGCGGGAGGAGCCCGAGCCGGAGGCTGA
GCCGCAGGATCAGCGCCAGGCTCTCCAGGAGCAGCAACGTGCCCCCAACG
CTCGCTTCGATAGCCATGCGGCCGTACAGTTGAAGCAGCAGACGCTGGCT
CGTCAGAGTCAGAAGAGCAAGAACAAGAAGGAGCACCAGCAGCTCTGCCG
CAGTGCCATCAAGCGGGCCAACAAGGTGCGCGACTTCCAGGCCAAGGCCA
ACCGCCCGCGCCGCTCGGAGATGCAGCACTGCAAGCTGGTCAGCGGCGCC
AACAACAACCGCAGCAAGTGCTGCTACGCAAGCTTTCTAGACCAT
BO10009.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DOR-RE | 1164 | CG11347-PE | 1..1161 | 17..1177 | 5805 | 100 | Plus |
DOR-RA | 1164 | CG11347-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
DOR-RB | 1164 | CG11347-PB | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DOR-RE | 1906 | CG11347-RE | 381..1541 | 17..1177 | 5805 | 100 | Plus |
DOR-RA | 2022 | CG11347-RA | 497..1657 | 17..1177 | 5805 | 100 | Plus |
DOR-RB | 2311 | CG11347-RB | 404..1564 | 17..1177 | 5805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4418780..4419172 | 388..780 | 1965 | 100 | Plus |
3L | 28110227 | 3L | 4418122..4418494 | 17..389 | 1865 | 100 | Plus |
3L | 28110227 | 3L | 4419428..4419663 | 780..1015 | 1180 | 100 | Plus |
3L | 28110227 | 3L | 4419738..4419901 | 1014..1177 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:00:46 has no hits.
BO10009.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:54 Download gff for
BO10009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11347-RA | 1..1164 | 17..1178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:23 Download gff for
BO10009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11347-RA | 490..1660 | 11..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:05 Download gff for
BO10009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DOR-RB | 409..1564 | 22..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:54 Download gff for
BO10009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11347-RA | 490..1660 | 11..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:58 Download gff for
BO10009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DOR-RB | 409..1564 | 22..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:58 Download gff for
BO10009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4418127..4418494 | 22..389 | 100 | -> | Plus |
3L | 4418782..4419172 | 390..780 | 100 | -> | Plus |
3L | 4419429..4419663 | 781..1015 | 100 | -> | Plus |
3L | 4419740..4419901 | 1016..1179 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:05 Download gff for
BO10009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4418127..4418494 | 22..389 | 100 | -> | Plus |
arm_3L | 4418782..4419172 | 390..780 | 100 | -> | Plus |
arm_3L | 4419429..4419663 | 781..1015 | 100 | -> | Plus |
arm_3L | 4419740..4419901 | 1016..1179 | 98 | | Plus |
BO10009.pep Sequence
Translation from 16 to 1195
> BO10009.pep
MLSSLASYLFGSATSDSISQEANPAQNRTNASNANSSSSPGPTSDPAAGD
VIEVTSSTPSVAGSSRGAVRASNGKRGKNRRGKQQRTNQQQRKQQPAITK
LLTPSGEIVDEDFDEDEWYIVEKEDEEDDSLPRSDSEEELSVVEVSQPRG
GSNNASSPMVTVATGTAFNCRRRQGVNSCSLYSGPRPQQQRNYLQRSRVS
RPLSISTLSPPRSVPALGAGDHDTLTQSLYVASPSGSDQGQDHGQGANVL
MEESCMSVYHSIRSTQEGTDSFVNLDLGVSTEVPQQREEPEPEAEPQDQR
QALQEQQRAPNARFDSHAAVQLKQQTLARQSQKSKNKKEHQQLCRSAIKR
ANKVRDFQAKANRPRRSEMQHCKLVSGANNNRSKCCYASFLDH
BO10009.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DOR-PE | 387 | CG11347-PE | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PA | 387 | CG11347-PA | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PB | 387 | CG11347-PB | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PD | 387 | CG11347-PD | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PH | 417 | CG11347-PH | 1..417 | 1..387 | 1929 | 92.6 | Plus |