Clone BO10009 Report

Search the DGRC for BO10009

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:100
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG11347-RA
Protein status:BO10009.pep: validated full length
Sequenced Size:1195

Clone Sequence Records

BO10009.3prime Sequence

914 bp (850 high quality bases) assembled on 2006-04-19

> BO10009.3prime
ATGGTCTAGAAAGCTTGCGTAGCAGCACTTGCTGCGGTTGTTGTTGGCGC
CGCTGACCAGCTTGCAGTGCTGCATCTCCGAGCGGCGCGGGCGGTTGGCC
TTGGCCTGGAAGTCGCGCACCTTGTTGGCCCGCTTGATGGCACTGCGGCA
GAGCTGCTGGTGCTCCTTCTTGTTCTTGCTCTTCTGACTCTGACGAGCCA
GCGTCTGCTGCTTCAACTGTACGGCCGCATGGCTATCGAAGCGAGCGTTG
GGGGCACGTTGCTGCTCCTGGAGAGCCTGGCGCTGATCCTGCGGCTCAGC
CTCCGGCTCGGGCTCCTCCCGCTGCTGCGGCACCTCCGTCGACACCCCGA
GATCAAGATTAACAAAACTATCGGTTCCCTCCTGGGTGGACCTAATACTA
TGATAAACGGACATGCAGGACTCCTCCATCAGCACGTTAGCACCCTGGCC
GTGATCCTGACCCTGGTCGCTGCCGCTCGGCGAGGCCACGTACAGCGACT
GGGTCAGCGTGTCATGATCGCCGGCCCCCAGGGCGGGCACACTTCTGGGC
GGGCTGAGGGTGCTGATGCTCAGCGGCCGGGAGACGCGCGAGCGTTGCAG
ATAGTTGCGTTGCTGCTGCGGCCGGGGCCCACTGTACAGGGAACACGAGT
TGACGCCCTGCCGGCGGCGGCAGTTGAACGCCGTGCCAGTGGCCACGGTC
ACCATTGGAGAGGAGGCGTTGTTGGAACCGCCCCGCGGCTGCGACACCTC
CACCACGGAGAGCTCCTCCTCGGAGTCGCTGCGTGGCAGGGAGTCGTCCT
CCTCGTCTTCCTTCTCCACAATGTACCATTCGTCCTCGTCGAAGTCCTCG
TCGACGATCTCGCCGGAGGGCGTCAGCAATTTGGTGATCGCTGGCTGTTG
TTTCGGCTGCTGCT

BO10009.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11347-PD 1164 CG11347-RD 266..1161 914..19 4455 99.8 Minus
CG11347-PB 1164 CG11347-RB 266..1161 914..19 4455 99.8 Minus
CG11347-PA 1164 CG11347-RA 266..1161 914..19 4455 99.8 Minus
CG11347-PC 822 CG11347-RC 32..819 806..19 3940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
DOR-RE 1906 CG11347-RE 646..1541 914..19 4465 99.9 Minus
DOR-RA 2022 CG11347-RA 762..1657 914..19 4465 99.9 Minus
DOR-RB 2311 CG11347-RB 669..1564 914..19 4465 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4418780..4419172 808..416 1965 100 Minus
3L 28110227 3L 4419428..4419663 416..181 1180 100 Minus
3L 28110227 3L 4419738..4419901 182..19 820 100 Minus
3L 28110227 3L 4418387..4418494 914..807 525 99.1 Minus
Blast to na_te.dros performed on 2015-02-10 18:35:01 has no hits.

BO10009.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:35 Download gff for BO10009.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11347-PB 266..1164 18..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:21 Download gff for BO10009.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11347-PA 266..1164 18..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:13:12 Download gff for BO10009.3prime
Subject Subject Range Query Range Percent Splice Strand
DOR-RB 669..1569 13..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:47 Download gff for BO10009.3prime
Subject Subject Range Query Range Percent Splice Strand
DOR-RB 669..1569 13..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:47 Download gff for BO10009.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4418387..4418494 807..914 99 -> Minus
3L 4418782..4419172 416..806 100 -> Minus
3L 4419429..4419663 181..415 100 -> Minus
3L 4419740..4419906 13..180 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:13:12 Download gff for BO10009.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4418387..4418494 807..914 99 -> Minus
arm_3L 4418782..4419172 416..806 100 -> Minus
arm_3L 4419429..4419663 181..415 100 -> Minus
arm_3L 4419740..4419906 13..180 98   Minus

BO10009.5prime Sequence

883 bp (729 high quality bases) assembled on 2006-04-19

> BO10009.5prime
GAAGTTATCAGTCGACATGTTAAGCAGCCTCGCCTCGTATCTCTTTGGAT
CAGCTACATCCGATTCCATTAGCCAAGAAGCCAATCCCGCCCAGAACCGA
ACGAACGCCTCGAACGCGAACTCTAGCTCGAGTCCCGGCCCGACCAGCGA
TCCCGCTGCAGGCGATGTAATTGAGGTCACCTCCTCGACGCCCTCGGTAG
CGGGCAGCAGTCGTGGGGCGGTGCGCGCCTCCAACGGCAAGCGGGGCAAG
AACAGGCGTGGCAAGCAGCAGCGGACCAACCAGCAGCAGCGGAAACAACA
GCCAGCGATCACCAAATTGCTGACGCCCTCCGGCGAGATCGTCGACGAGG
ACTTCGACGAGGACGAATGGTACATTGTGGAGAAGGAAGACGAGGAGGAC
GACTCCCTGCCACGCAGCGACTCCGAGGAGGAGCTCTCCGTGGTGGAGGT
GTCGCAGCCGCGGGGCGGTTCCAACAACGCCTCCTCTCCAATGGTGACCG
TGGCCACTGGCACGGCGTTCAACTGCCGCCGCCGGCAGGGCGTCAACTCG
TGTTCCCTGTACAGTGGGCCCCGGCCGCAGCAGCAACGCAACTATCTGCA
ACGCTCGCGCGTCTCCCGGCCGCTGAGCATCAGCACCCTCAGCCCGCCCA
GAAGTGTGCCCGCCCTGGGGGCCGGCGATCATGACACGCTGACCCAGTCG
CTGTACGTGGCCTCGCCGAGCGGCAGCGACCAGGGTCAGGATCACGGCCA
GGGTGCTAACGTGCTGATGGAGGAGTCCTGCATGTCCGTTTATCATAGTA
TTAGGTCCACCCAGGAGGGAACCGATAGTTTTGTTAATCTTGATCTCGGG
GGGTCGACGGAGGTGCCGCAGCAGCGGGAGGAG

BO10009.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11347-PD 1164 CG11347-RD 1..867 17..883 4310 99.8 Plus
CG11347-PB 1164 CG11347-RB 1..867 17..883 4310 99.8 Plus
CG11347-PA 1164 CG11347-RA 1..867 17..883 4310 99.8 Plus
CG11347-PC 822 CG11347-RC 32..525 390..883 2445 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
DOR-RE 1906 CG11347-RE 381..1247 17..883 4320 99.9 Plus
DOR-RA 2022 CG11347-RA 497..1363 17..883 4320 99.9 Plus
DOR-RB 2311 CG11347-RB 404..1270 17..883 4320 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4418780..4419172 388..780 1965 100 Plus
3L 28110227 3L 4418122..4418494 17..389 1865 100 Plus
3L 28110227 3L 4419428..4419531 780..883 505 99 Plus
Blast to na_te.dros performed on 2015-02-10 18:10:54 has no hits.

BO10009.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:36 Download gff for BO10009.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11347-PB 1..867 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:23 Download gff for BO10009.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11347-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:22 Download gff for BO10009.5prime
Subject Subject Range Query Range Percent Splice Strand
DOR-RB 399..1270 11..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:23 Download gff for BO10009.5prime
Subject Subject Range Query Range Percent Splice Strand
DOR-RB 399..1270 11..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:23 Download gff for BO10009.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4418117..4418494 11..389 99 -> Plus
3L 4418782..4419172 390..780 100 -> Plus
3L 4419429..4419531 781..883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:22 Download gff for BO10009.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4418117..4418494 11..389 99 -> Plus
arm_3L 4418782..4419172 390..780 100 -> Plus
arm_3L 4419429..4419531 781..883 99   Plus

BO10009.complete Sequence

1195 bp (1195 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631632

> BO10009.complete
GAAGTTATCAGTCGACATGTTAAGCAGCCTCGCCTCGTATCTCTTTGGAT
CAGCTACATCCGATTCCATTAGCCAAGAAGCCAATCCCGCCCAGAACCGA
ACGAACGCCTCGAACGCGAACTCTAGCTCGAGTCCCGGCCCGACCAGCGA
TCCCGCTGCAGGCGATGTAATTGAGGTCACCTCCTCGACGCCCTCGGTAG
CGGGCAGCAGTCGTGGGGCGGTGCGCGCCTCCAACGGCAAGCGGGGCAAG
AACAGGCGTGGCAAGCAGCAGCGGACCAACCAGCAGCAGCGGAAACAACA
GCCAGCGATCACCAAATTGCTGACGCCCTCCGGCGAGATCGTCGACGAGG
ACTTCGACGAGGACGAATGGTACATTGTGGAGAAGGAAGACGAGGAGGAC
GACTCCCTGCCACGCAGCGACTCCGAGGAGGAGCTCTCCGTGGTGGAGGT
GTCGCAGCCGCGGGGCGGTTCCAACAACGCCTCCTCTCCAATGGTGACCG
TGGCCACTGGCACGGCGTTCAACTGCCGCCGCCGGCAGGGCGTCAACTCG
TGTTCCCTGTACAGTGGGCCCCGGCCGCAGCAGCAACGCAACTATCTGCA
ACGCTCGCGCGTCTCCCGGCCGCTGAGCATCAGCACCCTCAGCCCGCCCA
GAAGTGTGCCCGCCCTGGGGGCCGGCGATCATGACACGCTGACCCAGTCG
CTGTACGTGGCCTCGCCGAGCGGCAGCGACCAGGGTCAGGATCACGGCCA
GGGTGCTAACGTGCTGATGGAGGAGTCCTGCATGTCCGTTTATCATAGTA
TTAGGTCCACCCAGGAGGGAACCGATAGTTTTGTTAATCTTGATCTCGGG
GTGTCGACGGAGGTGCCGCAGCAGCGGGAGGAGCCCGAGCCGGAGGCTGA
GCCGCAGGATCAGCGCCAGGCTCTCCAGGAGCAGCAACGTGCCCCCAACG
CTCGCTTCGATAGCCATGCGGCCGTACAGTTGAAGCAGCAGACGCTGGCT
CGTCAGAGTCAGAAGAGCAAGAACAAGAAGGAGCACCAGCAGCTCTGCCG
CAGTGCCATCAAGCGGGCCAACAAGGTGCGCGACTTCCAGGCCAAGGCCA
ACCGCCCGCGCCGCTCGGAGATGCAGCACTGCAAGCTGGTCAGCGGCGCC
AACAACAACCGCAGCAAGTGCTGCTACGCAAGCTTTCTAGACCAT

BO10009.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
DOR-RE 1164 CG11347-PE 1..1161 17..1177 5805 100 Plus
DOR-RA 1164 CG11347-PA 1..1161 17..1177 5805 100 Plus
DOR-RB 1164 CG11347-PB 1..1161 17..1177 5805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
DOR-RE 1906 CG11347-RE 381..1541 17..1177 5805 100 Plus
DOR-RA 2022 CG11347-RA 497..1657 17..1177 5805 100 Plus
DOR-RB 2311 CG11347-RB 404..1564 17..1177 5805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4418780..4419172 388..780 1965 100 Plus
3L 28110227 3L 4418122..4418494 17..389 1865 100 Plus
3L 28110227 3L 4419428..4419663 780..1015 1180 100 Plus
3L 28110227 3L 4419738..4419901 1014..1177 820 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:00:46 has no hits.

BO10009.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:54 Download gff for BO10009.complete
Subject Subject Range Query Range Percent Splice Strand
CG11347-RA 1..1164 17..1178 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:23 Download gff for BO10009.complete
Subject Subject Range Query Range Percent Splice Strand
CG11347-RA 490..1660 11..1183 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:05 Download gff for BO10009.complete
Subject Subject Range Query Range Percent Splice Strand
DOR-RB 409..1564 22..1179 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:54 Download gff for BO10009.complete
Subject Subject Range Query Range Percent Splice Strand
CG11347-RA 490..1660 11..1183 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:58 Download gff for BO10009.complete
Subject Subject Range Query Range Percent Splice Strand
DOR-RB 409..1564 22..1179 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:58 Download gff for BO10009.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4418127..4418494 22..389 100 -> Plus
3L 4418782..4419172 390..780 100 -> Plus
3L 4419429..4419663 781..1015 100 -> Plus
3L 4419740..4419901 1016..1179 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:05 Download gff for BO10009.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4418127..4418494 22..389 100 -> Plus
arm_3L 4418782..4419172 390..780 100 -> Plus
arm_3L 4419429..4419663 781..1015 100 -> Plus
arm_3L 4419740..4419901 1016..1179 98   Plus

BO10009.pep Sequence

Translation from 16 to 1195

> BO10009.pep
MLSSLASYLFGSATSDSISQEANPAQNRTNASNANSSSSPGPTSDPAAGD
VIEVTSSTPSVAGSSRGAVRASNGKRGKNRRGKQQRTNQQQRKQQPAITK
LLTPSGEIVDEDFDEDEWYIVEKEDEEDDSLPRSDSEEELSVVEVSQPRG
GSNNASSPMVTVATGTAFNCRRRQGVNSCSLYSGPRPQQQRNYLQRSRVS
RPLSISTLSPPRSVPALGAGDHDTLTQSLYVASPSGSDQGQDHGQGANVL
MEESCMSVYHSIRSTQEGTDSFVNLDLGVSTEVPQQREEPEPEAEPQDQR
QALQEQQRAPNARFDSHAAVQLKQQTLARQSQKSKNKKEHQQLCRSAIKR
ANKVRDFQAKANRPRRSEMQHCKLVSGANNNRSKCCYASFLDH

BO10009.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
DOR-PE 387 CG11347-PE 1..387 1..387 1980 100 Plus
DOR-PA 387 CG11347-PA 1..387 1..387 1980 100 Plus
DOR-PB 387 CG11347-PB 1..387 1..387 1980 100 Plus
DOR-PD 387 CG11347-PD 1..387 1..387 1980 100 Plus
DOR-PH 417 CG11347-PH 1..417 1..387 1929 92.6 Plus