Clone Sequence Records
BO10012.3prime Sequence
935 bp (796 high quality bases) assembled on 2006-04-19
> BO10012.3prime
ATGGTCTAGAAAGCTTGCGATGTAACTTACACTAGTCTGGGCCAGACGTA
TTACAAGGACTCCCCGCCGTACAATTTGCTCGAGGGCACCTGGTCTAATT
GTCCGCAAACCCAAATCTAGCCTTGTCCACAAAGTCTCATCGCGAGAGCA
GCGGTTAAAGCGTCGACAAACGGTAGCCATGCGCAGCAGCGTCTTCTTCG
GGAGCCACTTAAAGATGTCAAGTAGTATTTCGTCTGAAAGTCTTTCAAAG
TAGTTTATGCCGCTGTTGATGTGGGCACTCATGGCCGGGGTGCGAAACAC
AAAGAAACTGTCCGCTGCCACTATTCGGGTTGTAATATTTGTTGTCGAGG
GCTTTTTTGCCTGGCGAACTTGCGCCAACCTGCTGGTTGATGGCTGAAAA
TTGAGCGAAGCAGTCCCATCAATCTGGTTGTTACAGGTGACTGCAGCCAG
GGGGTTGCGCAAACGTTTGCTGGGCGAGTTTGAATTGCCGCTACCTTCAG
AACCCAACGACGAGCGCTTAGCCTGCGCCAGAATCTGCAGCTTCTCGGCC
GATTGACGGGACATCGACAGTGAATCCTCCACAGCTGGGCTATCCAGTGT
GATGTCCCCCGTAGAGCCCAGACTTAGCCGTTGCGTGTGCTGTAGCTGGT
GCGCCATGCGCGACACACTGGCGCACGGGGTCGTCTCATTTGAGTTGTCG
TCGCTGGTGGCGCTAACCGCCAAAGCGATGGCCGAGAGGGCTGAGGAGCT
GCTTTCTTCGGAATCAAGCATTCCGATTCCCATCTCTTCTAGGGCCTCAA
AAGTTAGTGCCGAGGGCGAGGAAGGGTGCTCGTAGTGCGATGACTTCGTA
GTGGAAACTAGAGCGCCCACAACAGAGACGTGGTTCTTATTAGTCGAGCG
CTTTCTGGTCACCGGGCACAAATTTTTCATGTTTT
BO10012.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9772-PC | 948 | CG9772-RC | 29..945 | 935..19 | 4560 | 99.8 | Minus |
| CG9772-PA | 1680 | CG9772-RA | 29..933 | 935..31 | 4500 | 99.8 | Minus |
| CG9772-PB | 1746 | CG9772-RB | 120..999 | 910..31 | 4400 | 100 | Minus |
| CG9772-PD | 1500 | CG9772-RD | 1..753 | 783..31 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1853 | CG9772-RE | 97..1001 | 935..31 | 4510 | 99.9 | Minus |
| Skp2-RA | 2412 | CG9772-RA | 97..1001 | 935..31 | 4510 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4336457..4337345 | 19..907 | 4445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:37:21 has no hits.
BO10012.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:41 Download gff for
BO10012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-PC | 29..948 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:31 Download gff for
BO10012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-PC | 29..948 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:13:32 Download gff for
BO10012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 109..1013 | 31..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:46 Download gff for
BO10012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 97..1001 | 31..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:46 Download gff for
BO10012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4336450..4337342 | 10..904 | 99 | <- | Plus |
| 3R | 4337548..4337578 | 905..935 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:13:32 Download gff for
BO10012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 162172..163064 | 10..904 | 99 | <- | Plus |
| arm_3R | 163270..163300 | 905..935 | 96 | | Plus |
BO10012.5prime Sequence
881 bp (745 high quality bases) assembled on 2006-04-19
> BO10012.5prime
GAAGTTATCAGTCGACATGAGCAGTCGCAAGCACAGAGGCTCCGAAAACA
TGGAAAATTTGTGCCCGGTGACCAGAAAGCGCTCGACTAATAAGAACCAC
GTCTCTGTTGTGGGCGCTCTAGTTTCCACTACGAAGTCATCGCACTACGA
GCACCCTTCCTCGCCCTCGGCACTAACTTTTGAGGCCCTAGAAGAGATGG
GAATCGGAATGCTTGATTCCGAAGAAAGCAGCTCCTCAGCCCTCTCGGCC
ATCGCTTTGGCGGTTAGCGCCACCAGCGACGACAACTCAAATGAGACGAC
CCCGTGCGCCAGTGTGTCGCGCATGGCGCACCAGCTACAGCACACGCAAC
GGCTAAGTCTGGGCTCTACGGGGGACATCACACTGGATAGCCCAGCTGTG
GAGGATTCACTGTCGATGTCCCGTCAATCGGCCGAGAAGCTGCAGATTCT
GGCGCAGGCTAAGCGCTCGTCGTTGGGTTCTGAAGGTAGCGGCAATTCAA
ACTCGCCCAGCAAACGTTTGCGCAACCCCCTGGCTGCAGTCACCTGTAAC
AACCAGATTGATGGGACTGCTTCGCTCAATTTTCAGCCATCAACCAGCAG
GTTGGCGCAAGTTCGCCAGGCAAAAAAGCCCTCGACAACAAATATTACAA
CCCGAATAGTGGCAGCGGACAGTTTCTTTGTGTTTCGCACCCCGGCCATG
AGTGCCCACATCAACAGCGGCATAAACTACTTTGAAAGACTTTCAGACGA
AATACTACTTGACATCTTTAAGTGGCTCCCGAAGAAGACGCTGCTGCGCA
TGGCTACCGTTTGTCGACGCTTTAACCGCTGCTCTCGCGATGAGACTTTG
TGGGACAGGCTAGATTTGGGTTTGCGGACAT
BO10012.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9772-PA | 1680 | CG9772-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
| CG9772-PC | 948 | CG9772-RC | 1..837 | 17..853 | 4185 | 100 | Plus |
| CG9772-PB | 1746 | CG9772-RB | 120..903 | 70..853 | 3920 | 100 | Plus |
| CG9772-PD | 1500 | CG9772-RD | 1..657 | 197..853 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1853 | CG9772-RE | 69..932 | 17..880 | 4275 | 99.8 | Plus |
| Skp2-RA | 2412 | CG9772-RA | 69..932 | 17..880 | 4275 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4336538..4337345 | 880..73 | 3995 | 99.6 | Minus |
| 3R | 32079331 | 3R | 4337548..4337606 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:12:50 has no hits.
BO10012.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:42 Download gff for
BO10012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-PA | 1..864 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:32 Download gff for
BO10012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-PC | 1..864 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:25:14 Download gff for
BO10012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 75..944 | 11..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:40:32 Download gff for
BO10012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 63..932 | 11..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:40:32 Download gff for
BO10012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4336536..4337342 | 76..881 | 99 | <- | Minus |
| 3R | 4337548..4337612 | 11..75 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:25:14 Download gff for
BO10012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 162258..163064 | 76..881 | 99 | <- | Minus |
| arm_3R | 163270..163334 | 11..75 | 95 | | Minus |
BO10012.complete Sequence
979 bp (979 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631633
> BO10012.complete
GAAGTTATCAGTCGACATGAGCAGTCGCAAGCACAGAGGCTCCGAAAACA
TGGAAAATTTGTGCCCGGTGACCAGAAAGCGCTCGACTAATAAGAACCAC
GTCTCTGTTGTGGGCGCTCTAGTTTCCACTACGAAGTCATCGCACTACGA
GCACCCTTCCTCGCCCTCGGCACTAACTTTTGAGGCCCTAGAAGAGATGG
GAATCGGAATGCTTGATTCCGAAGAAAGCAGCTCCTCAGCCCTCTCGGCC
ATCGCTTTGGCGGTTAGCGCCACCAGCGACGACAACTCAAATGAGACGAC
CCCGTGCGCCAGTGTGTCGCGCATGGCGCACCAGCTACAGCACACGCAAC
GGCTAAGTCTGGGCTCTACGGGGGACATCACACTGGATAGCCCAGCTGTG
GAGGATTCACTGTCGATGTCCCGTCAATCGGCCGAGAAGCTGCAGATTCT
GGCGCAGGCTAAGCGCTCGTCGTTGGGTTCTGAAGGTAGCGGCAATTCAA
ACTCGCCCAGCAAACGTTTGCGCAACCCCCTGGCTGCAGTCACCTGTAAC
AACCAGATTGATGGGACTGCTTCGCTCAATTTTCAGCCATCAACCAGCAG
GTTGGCGCAAGTTCGCCAGGCAAAAAAGCCCTCGACAACAAATATTACAA
CCCGAATAGTGGCAGCGGACAGTTTCTTTGTGTTTCGCACCCCGGCCATG
AGTGCCCACATCAACAGCGGCATAAACTACTTTGAAAGACTTTCAGACGA
AATACTACTTGACATCTTTAAGTGGCTCCCGAAGAAGACGCTGCTGCGCA
TGGCTACCGTTTGTCGACGCTTTAACCGCTGCTCTCGCGATGAGACTTTG
TGGACAAGGCTAGATTTGGGTTTGCGGACAATTAGACCAGGTGCCCTCGA
GCAAATTGTACGGCGGGGAGTCCTTGTAATACGTCTGGCCCAGACTAGTG
TAAGTTACATCGCAAGCTTTCTAGACCAT
BO10012.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1680 | CG9772-PE | 1..933 | 17..949 | 4665 | 100 | Plus |
| Skp2-RA | 1680 | CG9772-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1853 | CG9772-RE | 69..1001 | 17..949 | 4665 | 100 | Plus |
| Skp2-RA | 2412 | CG9772-RA | 69..1001 | 17..949 | 4665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4336457..4337345 | 961..73 | 4445 | 100 | Minus |
| 3R | 32079331 | 3R | 4337548..4337606 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:00:35 has no hits.
BO10012.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:55 Download gff for
BO10012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-RC | 1..948 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:45 Download gff for
BO10012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-RC | 75..1032 | 11..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:15:55 Download gff for
BO10012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 81..1013 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:55 Download gff for
BO10012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-RC | 75..1032 | 11..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:34 Download gff for
BO10012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 69..1001 | 17..949 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:34 Download gff for
BO10012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4336455..4337342 | 76..963 | 99 | <- | Minus |
| 3R | 4337548..4337606 | 17..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:15:55 Download gff for
BO10012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 162177..163064 | 76..963 | 99 | <- | Minus |
| arm_3R | 163270..163328 | 17..75 | 100 | | Minus |
BO10012.pep Sequence
Translation from 16 to 979
> BO10012.pep
MSSRKHRGSENMENLCPVTRKRSTNKNHVSVVGALVSTTKSSHYEHPSSP
SALTFEALEEMGIGMLDSEESSSSALSAIALAVSATSDDNSNETTPCASV
SRMAHQLQHTQRLSLGSTGDITLDSPAVEDSLSMSRQSAEKLQILAQAKR
SSLGSEGSGNSNSPSKRLRNPLAAVTCNNQIDGTASLNFQPSTSRLAQVR
QAKKPSTTNITTRIVAADSFFVFRTPAMSAHINSGINYFERLSDEILLDI
FKWLPKKTLLRMATVCRRFNRCSRDETLWTRLDLGLRTIRPGALEQIVRR
GVLVIRLAQTSVSYIASFLDH
BO10012.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-PE | 559 | CG9772-PE | 1..312 | 1..312 | 1555 | 99.7 | Plus |
| Skp2-PA | 559 | CG9772-PA | 1..312 | 1..312 | 1555 | 99.7 | Plus |
