Clone Sequence Records
BO10021.3prime Sequence
930 bp (794 high quality bases) assembled on 2006-04-19
> BO10021.3prime
ATGGTCTAGAAAGCTTGCCCGGCGCATCTGAAAGCCAATGGAGCCATTCG
GACAGGGACCCTTGGGCAGGCGCAGGACTAGGTCGTTGAACGGATGCGGA
TGCTGGCCGAGCTGCTGCGCCTGATGATTCTGATGCTGCTGCTGATGCTG
GTGCTGCTGCTGATGCTGCTGCTGGTGCTGCTGTGGCGACTGCAGCGACT
GTTGGCGCAGGAGGGCGGCGGACACTGATCCGCCCACAACAGGTGACCAG
CTCTGCTGCGGATTGGGCGACGACTGGGGCGGCGCCTGAGCTTGCATCCC
AACACCGCCCAGTCCCGATCCTCCGCCTCCGTACGGCGGCAACCGTTGAT
TGAAATGCTGCGACGGCTGCTGCTGCTGTTGCTGCTGATGCTGATGCTGA
TGTTGCGGGTTATGCGGATAGTAGTAGTTAAGGCCAGGCTGATTGTGCAG
TCCCGGGAAGTAGCTGTTGTAGTTATTATACATCGGCGTCACTTGGGACA
TTTTCGGTGCCGAACTCGAGCGGTGCATTCCGCCTCCTGGATGGCTACTA
TTGTTGTTGATGACGTTGTTGTTGCTGATCGCAGAGGGGGGAGTGACAGG
CGGCGCCGCGGACGAAACAGCCACACTGCTGCTATTGACAGCTGGCGTGA
TGGGAGTGGCCGGTTTGTCATCCTCCGGGTTTTTGGCAGCGCCCAGGATG
CGCAGCCTGGCCTCGGCGTACTCCTGTTCTCGCTGCTTGAGCGTCTTGAT
GGGCTGCTTCGGTCGCATTCCGTTAATGTCCCGCCGCTCCTCCGCCTGGG
CGGGCCGCCGCAGTATCTTGACGGTCTGGTTGCTGGTGGGCGTGCAATAG
GTGGCCGCATCGTAGTCATTGGTCGTCTTGTGCAGCACCATCATGACGGG
CTGCTGCTGTTGCTCCTGCTGGGTAGATGA
BO10021.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-PA | 1179 | CG31908-RA | 265..1176 | 930..19 | 4560 | 100 | Minus |
CG31908-PB | 1179 | CG31908-RB | 265..1176 | 930..19 | 4560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-RC | 2135 | CG31908-RC | 877..1788 | 930..19 | 4560 | 100 | Minus |
CG31908-RB | 1821 | CG31908-RB | 563..1474 | 930..19 | 4560 | 100 | Minus |
CG31908-RA | 2033 | CG31908-RA | 775..1686 | 930..19 | 4560 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7025176..7025818 | 19..661 | 3215 | 100 | Plus |
2L | 23513712 | 2L | 7026156..7026425 | 661..930 | 1350 | 100 | Plus |
X | 23542271 | X | 10618460..10618520 | 137..197 | 185 | 86.9 | Plus |
Blast to na_te.dros performed 2015-02-10 19:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2638..2856 | 579..345 | 146 | 56.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6870..6917 | 410..366 | 134 | 79.2 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 837..911 | 929..854 | 125 | 64.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6929 | 921..789 | 123 | 58.5 | Minus |
BO10021.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:59 Download gff for
BO10021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-PA | 266..1179 | 15..929 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:52 Download gff for
BO10021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-PB | 266..1179 | 15..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:31:05 Download gff for
BO10021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RA | 785..1698 | 15..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:29 Download gff for
BO10021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RA | 776..1689 | 15..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:29 Download gff for
BO10021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7026157..7026424 | 662..929 | 100 | | Plus |
2L | 7025173..7025818 | 15..661 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:31:05 Download gff for
BO10021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7025173..7025818 | 15..661 | 99 | <- | Plus |
arm_2L | 7026157..7026424 | 662..929 | 100 | | Plus |
BO10021.5prime Sequence
925 bp (868 high quality bases) assembled on 2006-04-19
> BO10021.5prime
GAAGTTATCAGTCGACATGTCCCATGGCGAGGATGTGTTAGACAACTGGG
AGGAAATCGACGAGGATGGGCTCTCTATGACTCTGCAAACAAAGCTGCAG
ACGAGCGACCCACCTGTCAACAAAATGAAATTGCTCCAACGGCCGCAGAG
CGTACAGGAGTCCTCACAAATCCTGAGCAGCGGCGATGGTGGCGGCGGTG
GTGGAAACGGGGGCGGGAATCCCCCGCCACGGCAGATCACCATTGCCCGG
AAGCCCCAAGTACCGCCAGCAGAGGTTGACTCATCTACCCAGCAGGAGCA
ACAGCAGCAGCCCGTCATGATGGTGCTGCACAAGACGACCAATGACTACG
ATGCGGCCACCTATTGCACGCCCACCAGCAACCAGACCGTCAAGATACTG
CGGCGGCCCGCCCAGGCGGAGGAGCGGCGGGACATTAACGGAATGCGACC
GAAGCAGCCCATCAAGACGCTCAAGCAGCGAGAACAGGAGTACGCCGAGG
CCAGGCTGCGCATCCTGGGCGCTGCCAAAAACCCGGAGGATGACAAACCG
GCCACTCCCATCACGCCAGCTGTCAATAGCAGCAGTGTGGCTGTTTCGTC
CGCGGCGCCGCCTGTCACTCCCCCCTCTGCGATCAGCAACAACAACGTCA
TCAACAACAATAGTAGCCATCCAGGAGGCGGAATGCACCGCTCGAGTTCG
GCACCGAAAATGTCCCAAGTGACGCCGATGTATAATAACTACAACAGCTA
CTTCCCGGGACTGCACAATCAGCCTGGCCTTAACTACTACTATCCGCATA
ACCCGCAACATCAGCATCAGCATCAGCAGCAACAGCAGCAGCAGCCGTCG
CAGCATTTTCATCAACGGTTGGCGCCGTACGGAGGCGGAGGATCGGGACT
GGGCGGTGTTGGGATGCAAGCTCAG
BO10021.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-PA | 1179 | CG31908-RA | 1..909 | 17..925 | 4470 | 99.6 | Plus |
CG31908-PB | 1179 | CG31908-RB | 1..909 | 17..925 | 4470 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-RC | 2135 | CG31908-RC | 613..1521 | 17..925 | 4500 | 99.7 | Plus |
CG31908-RB | 1821 | CG31908-RB | 299..1207 | 17..925 | 4500 | 99.7 | Plus |
CG31908-RA | 2033 | CG31908-RA | 511..1419 | 17..925 | 4500 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7026156..7026636 | 550..70 | 2405 | 100 | Minus |
2L | 23513712 | 2L | 7025443..7025818 | 925..550 | 1835 | 99.2 | Minus |
2L | 23513712 | 2L | 7026724..7026777 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 03:54:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2638..2856 | 632..866 | 155 | 57.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6870..6917 | 801..845 | 134 | 79.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6929 | 248..422 | 125 | 56.7 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 837..911 | 282..357 | 125 | 64.5 | Plus |
BO10021.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:00 Download gff for
BO10021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:54 Download gff for
BO10021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-PB | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:56:38 Download gff for
BO10021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RA | 509..1428 | 5..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:32:28 Download gff for
BO10021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RA | 500..1419 | 5..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:32:28 Download gff for
BO10021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7025443..7025818 | 550..925 | 99 | <- | Minus |
2L | 7026157..7026635 | 71..549 | 100 | <- | Minus |
2L | 7026724..7026779 | 11..70 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:56:38 Download gff for
BO10021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7025443..7025818 | 550..925 | 99 | <- | Minus |
arm_2L | 7026157..7026635 | 71..549 | 100 | <- | Minus |
arm_2L | 7026724..7026779 | 11..70 | 93 | <- | Minus |
BO10021.complete Sequence
1210 bp (1210 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631634
> BO10021.complete
GAAGTTATCAGTCGACATGTCCCATGGCGAGGATGTGTTAGACAACTGGG
AGGAAATCGACGAGGATGGGCTCTCTATGACTCTGCAAACAAAGCTGCAG
ACGAGCGACCCACCTGTCAACAAAATGAAATTGCTCCAACGGCCGCAGAG
CGTACAGGAGTCCTCACAAATCCTGAGCAGCGGCGATGGTGGCGGCGGTG
GTGGAAACGGGGGCGGGAATCCCCCGCCACGGCAGATCACCATTGCCCGG
AAGCCCCAAGTACCGCCAGCAGAGGTTGACTCATCTACCCAGCAGGAGCA
ACAGCAGCAGCCCGTCATGATGGTGCTGCACAAGACGACCAATGACTACG
ATGCGGCCACCTATTGCACGCCCACCAGCAACCAGACCGTCAAGATACTG
CGGCGGCCCGCCCAGGCGGAGGAGCGGCGGGACATTAACGGAATGCGACC
GAAGCAGCCCATCAAGACGCTCAAGCAGCGAGAACAGGAGTACGCCGAGG
CCAGGCTGCGCATCCTGGGCGCTGCCAAAAACCCGGAGGATGACAAACCG
GCCACTCCCATCACGCCAGCTGTCAATAGCAGCAGTGTGGCTGTTTCGTC
CGCGGCGCCGCCTGTCACTCCCCCCTCTGCGATCAGCAACAACAACGTCA
TCAACAACAATAGTAGCCATCCAGGAGGCGGAATGCACCGCTCGAGTTCG
GCACCGAAAATGTCCCAAGTGACGCCGATGTATAATAACTACAACAGCTA
CTTCCCGGGACTGCACAATCAGCCTGGCCTTAACTACTACTATCCGCATA
ACCCGCAACATCAGCATCAGCATCAGCAGCAACAGCAGCAGCAGCCGTCG
CAGCATTTCAATCAACGGTTGCCGCCGTACGGAGGCGGAGGATCGGGACT
GGGCGGTGTTGGGATGCAAGCTCAGGCGCCGCCCCAGTCGTCGCCCAATC
CGCAGCAGAGCTGGTCACCTGTTGTGGGCGGATCAGTGTCCGCCGCCCTC
CTGCGCCAACAGTCGCTGCAGTCGCCACAGCAGCACCAGCAGCAGCATCA
GCAGCAGCACCAGCATCAGCAGCAGCATCAGAATCATCAGGCGCAGCAGC
TCGGCCAGCATCCGCATCCGTTCAACGACCTAGTCCTGCGCCTGCCCAAG
GGTCCCTGTCCGAATGGCTCCATTGGCTTTCAGATGCGCCGGGCAAGCTT
TCTAGACCAT
BO10021.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-RC | 1179 | CG31908-PC | 1..1176 | 17..1192 | 5880 | 100 | Plus |
CG31908-RB | 1179 | CG31908-PB | 1..1176 | 17..1192 | 5880 | 100 | Plus |
CG31908-RA | 1179 | CG31908-PA | 1..1176 | 17..1192 | 5880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-RC | 2135 | CG31908-RC | 613..1788 | 17..1192 | 5880 | 100 | Plus |
CG31908-RB | 1821 | CG31908-RB | 299..1474 | 17..1192 | 5880 | 100 | Plus |
CG31908-RA | 2033 | CG31908-RA | 511..1686 | 17..1192 | 5880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7025176..7025818 | 1192..550 | 3215 | 100 | Minus |
2L | 23513712 | 2L | 7026156..7026636 | 550..70 | 2405 | 100 | Minus |
2L | 23513712 | 2L | 7026724..7026777 | 70..17 | 270 | 100 | Minus |
X | 23542271 | X | 10618460..10618520 | 1074..1014 | 185 | 86.9 | Minus |
Blast to na_te.dros performed 2014-11-27 14:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2638..2856 | 632..866 | 146 | 56.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6870..6917 | 801..845 | 134 | 79.2 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 837..911 | 282..357 | 125 | 64.5 | Plus |
BO10021.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:59 Download gff for
BO10021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RB | 1..1179 | 17..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:47 Download gff for
BO10021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RB | 334..1523 | 5..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:57 Download gff for
BO10021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RA | 520..1695 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:59 Download gff for
BO10021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RB | 334..1523 | 5..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:48 Download gff for
BO10021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RA | 511..1686 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:48 Download gff for
BO10021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7025174..7025818 | 550..1194 | 99 | <- | Minus |
2L | 7026157..7026635 | 71..549 | 100 | <- | Minus |
2L | 7026724..7026777 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:57 Download gff for
BO10021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7025174..7025818 | 550..1194 | 99 | <- | Minus |
arm_2L | 7026157..7026635 | 71..549 | 100 | <- | Minus |
arm_2L | 7026724..7026777 | 17..70 | 100 | | Minus |
BO10021.pep Sequence
Translation from 16 to 1210
> BO10021.pep
MSHGEDVLDNWEEIDEDGLSMTLQTKLQTSDPPVNKMKLLQRPQSVQESS
QILSSGDGGGGGGNGGGNPPPRQITIARKPQVPPAEVDSSTQQEQQQQPV
MMVLHKTTNDYDAATYCTPTSNQTVKILRRPAQAEERRDINGMRPKQPIK
TLKQREQEYAEARLRILGAAKNPEDDKPATPITPAVNSSSVAVSSAAPPV
TPPSAISNNNVINNNSSHPGGGMHRSSSAPKMSQVTPMYNNYNSYFPGLH
NQPGLNYYYPHNPQHQHQHQQQQQQQPSQHFNQRLPPYGGGGSGLGGVGM
QAQAPPQSSPNPQQSWSPVVGGSVSAALLRQQSLQSPQQHQQQHQQQHQH
QQQHQNHQAQQLGQHPHPFNDLVLRLPKGPCPNGSIGFQMRRASFLDH
BO10021.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-PC | 392 | CG31908-PC | 1..392 | 1..392 | 2104 | 100 | Plus |
CG31908-PB | 392 | CG31908-PB | 1..392 | 1..392 | 2104 | 100 | Plus |
CG31908-PA | 392 | CG31908-PA | 1..392 | 1..392 | 2104 | 100 | Plus |
tlk-PG | 1489 | CG34412-PG | 93..356 | 95..361 | 162 | 27.5 | Plus |
vvl-PC | 713 | CG10037-PC | 439..695 | 132..382 | 161 | 26.4 | Plus |