Clone BO10021 Report

Search the DGRC for BO10021

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:100
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG31908-RA
Protein status:BO10021.pep: validated full length
Sequenced Size:1210

Clone Sequence Records

BO10021.3prime Sequence

930 bp (794 high quality bases) assembled on 2006-04-19

> BO10021.3prime
ATGGTCTAGAAAGCTTGCCCGGCGCATCTGAAAGCCAATGGAGCCATTCG
GACAGGGACCCTTGGGCAGGCGCAGGACTAGGTCGTTGAACGGATGCGGA
TGCTGGCCGAGCTGCTGCGCCTGATGATTCTGATGCTGCTGCTGATGCTG
GTGCTGCTGCTGATGCTGCTGCTGGTGCTGCTGTGGCGACTGCAGCGACT
GTTGGCGCAGGAGGGCGGCGGACACTGATCCGCCCACAACAGGTGACCAG
CTCTGCTGCGGATTGGGCGACGACTGGGGCGGCGCCTGAGCTTGCATCCC
AACACCGCCCAGTCCCGATCCTCCGCCTCCGTACGGCGGCAACCGTTGAT
TGAAATGCTGCGACGGCTGCTGCTGCTGTTGCTGCTGATGCTGATGCTGA
TGTTGCGGGTTATGCGGATAGTAGTAGTTAAGGCCAGGCTGATTGTGCAG
TCCCGGGAAGTAGCTGTTGTAGTTATTATACATCGGCGTCACTTGGGACA
TTTTCGGTGCCGAACTCGAGCGGTGCATTCCGCCTCCTGGATGGCTACTA
TTGTTGTTGATGACGTTGTTGTTGCTGATCGCAGAGGGGGGAGTGACAGG
CGGCGCCGCGGACGAAACAGCCACACTGCTGCTATTGACAGCTGGCGTGA
TGGGAGTGGCCGGTTTGTCATCCTCCGGGTTTTTGGCAGCGCCCAGGATG
CGCAGCCTGGCCTCGGCGTACTCCTGTTCTCGCTGCTTGAGCGTCTTGAT
GGGCTGCTTCGGTCGCATTCCGTTAATGTCCCGCCGCTCCTCCGCCTGGG
CGGGCCGCCGCAGTATCTTGACGGTCTGGTTGCTGGTGGGCGTGCAATAG
GTGGCCGCATCGTAGTCATTGGTCGTCTTGTGCAGCACCATCATGACGGG
CTGCTGCTGTTGCTCCTGCTGGGTAGATGA

BO10021.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-PA 1179 CG31908-RA 265..1176 930..19 4560 100 Minus
CG31908-PB 1179 CG31908-RB 265..1176 930..19 4560 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-RC 2135 CG31908-RC 877..1788 930..19 4560 100 Minus
CG31908-RB 1821 CG31908-RB 563..1474 930..19 4560 100 Minus
CG31908-RA 2033 CG31908-RA 775..1686 930..19 4560 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7025176..7025818 19..661 3215 100 Plus
2L 23513712 2L 7026156..7026425 661..930 1350 100 Plus
X 23542271 X 10618460..10618520 137..197 185 86.9 Plus
Blast to na_te.dros performed 2015-02-10 19:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2638..2856 579..345 146 56.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6870..6917 410..366 134 79.2 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 837..911 929..854 125 64.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6929 921..789 123 58.5 Minus

BO10021.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:27:59 Download gff for BO10021.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-PA 266..1179 15..929 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:52 Download gff for BO10021.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-PB 266..1179 15..929 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:31:05 Download gff for BO10021.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-RA 785..1698 15..929 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:29 Download gff for BO10021.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-RA 776..1689 15..929 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:29 Download gff for BO10021.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7026157..7026424 662..929 100   Plus
2L 7025173..7025818 15..661 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:31:05 Download gff for BO10021.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7025173..7025818 15..661 99 <- Plus
arm_2L 7026157..7026424 662..929 100   Plus

BO10021.5prime Sequence

925 bp (868 high quality bases) assembled on 2006-04-19

> BO10021.5prime
GAAGTTATCAGTCGACATGTCCCATGGCGAGGATGTGTTAGACAACTGGG
AGGAAATCGACGAGGATGGGCTCTCTATGACTCTGCAAACAAAGCTGCAG
ACGAGCGACCCACCTGTCAACAAAATGAAATTGCTCCAACGGCCGCAGAG
CGTACAGGAGTCCTCACAAATCCTGAGCAGCGGCGATGGTGGCGGCGGTG
GTGGAAACGGGGGCGGGAATCCCCCGCCACGGCAGATCACCATTGCCCGG
AAGCCCCAAGTACCGCCAGCAGAGGTTGACTCATCTACCCAGCAGGAGCA
ACAGCAGCAGCCCGTCATGATGGTGCTGCACAAGACGACCAATGACTACG
ATGCGGCCACCTATTGCACGCCCACCAGCAACCAGACCGTCAAGATACTG
CGGCGGCCCGCCCAGGCGGAGGAGCGGCGGGACATTAACGGAATGCGACC
GAAGCAGCCCATCAAGACGCTCAAGCAGCGAGAACAGGAGTACGCCGAGG
CCAGGCTGCGCATCCTGGGCGCTGCCAAAAACCCGGAGGATGACAAACCG
GCCACTCCCATCACGCCAGCTGTCAATAGCAGCAGTGTGGCTGTTTCGTC
CGCGGCGCCGCCTGTCACTCCCCCCTCTGCGATCAGCAACAACAACGTCA
TCAACAACAATAGTAGCCATCCAGGAGGCGGAATGCACCGCTCGAGTTCG
GCACCGAAAATGTCCCAAGTGACGCCGATGTATAATAACTACAACAGCTA
CTTCCCGGGACTGCACAATCAGCCTGGCCTTAACTACTACTATCCGCATA
ACCCGCAACATCAGCATCAGCATCAGCAGCAACAGCAGCAGCAGCCGTCG
CAGCATTTTCATCAACGGTTGGCGCCGTACGGAGGCGGAGGATCGGGACT
GGGCGGTGTTGGGATGCAAGCTCAG

BO10021.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-PA 1179 CG31908-RA 1..909 17..925 4470 99.6 Plus
CG31908-PB 1179 CG31908-RB 1..909 17..925 4470 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-RC 2135 CG31908-RC 613..1521 17..925 4500 99.7 Plus
CG31908-RB 1821 CG31908-RB 299..1207 17..925 4500 99.7 Plus
CG31908-RA 2033 CG31908-RA 511..1419 17..925 4500 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7026156..7026636 550..70 2405 100 Minus
2L 23513712 2L 7025443..7025818 925..550 1835 99.2 Minus
2L 23513712 2L 7026724..7026777 70..17 270 100 Minus
Blast to na_te.dros performed 2015-02-04 03:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2638..2856 632..866 155 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6870..6917 801..845 134 79.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6929 248..422 125 56.7 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 837..911 282..357 125 64.5 Plus

BO10021.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:00 Download gff for BO10021.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:54 Download gff for BO10021.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-PB 1..909 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:56:38 Download gff for BO10021.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-RA 509..1428 5..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:32:28 Download gff for BO10021.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-RA 500..1419 5..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:32:28 Download gff for BO10021.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7025443..7025818 550..925 99 <- Minus
2L 7026157..7026635 71..549 100 <- Minus
2L 7026724..7026779 11..70 93 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:56:38 Download gff for BO10021.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7025443..7025818 550..925 99 <- Minus
arm_2L 7026157..7026635 71..549 100 <- Minus
arm_2L 7026724..7026779 11..70 93 <- Minus

BO10021.complete Sequence

1210 bp (1210 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631634

> BO10021.complete
GAAGTTATCAGTCGACATGTCCCATGGCGAGGATGTGTTAGACAACTGGG
AGGAAATCGACGAGGATGGGCTCTCTATGACTCTGCAAACAAAGCTGCAG
ACGAGCGACCCACCTGTCAACAAAATGAAATTGCTCCAACGGCCGCAGAG
CGTACAGGAGTCCTCACAAATCCTGAGCAGCGGCGATGGTGGCGGCGGTG
GTGGAAACGGGGGCGGGAATCCCCCGCCACGGCAGATCACCATTGCCCGG
AAGCCCCAAGTACCGCCAGCAGAGGTTGACTCATCTACCCAGCAGGAGCA
ACAGCAGCAGCCCGTCATGATGGTGCTGCACAAGACGACCAATGACTACG
ATGCGGCCACCTATTGCACGCCCACCAGCAACCAGACCGTCAAGATACTG
CGGCGGCCCGCCCAGGCGGAGGAGCGGCGGGACATTAACGGAATGCGACC
GAAGCAGCCCATCAAGACGCTCAAGCAGCGAGAACAGGAGTACGCCGAGG
CCAGGCTGCGCATCCTGGGCGCTGCCAAAAACCCGGAGGATGACAAACCG
GCCACTCCCATCACGCCAGCTGTCAATAGCAGCAGTGTGGCTGTTTCGTC
CGCGGCGCCGCCTGTCACTCCCCCCTCTGCGATCAGCAACAACAACGTCA
TCAACAACAATAGTAGCCATCCAGGAGGCGGAATGCACCGCTCGAGTTCG
GCACCGAAAATGTCCCAAGTGACGCCGATGTATAATAACTACAACAGCTA
CTTCCCGGGACTGCACAATCAGCCTGGCCTTAACTACTACTATCCGCATA
ACCCGCAACATCAGCATCAGCATCAGCAGCAACAGCAGCAGCAGCCGTCG
CAGCATTTCAATCAACGGTTGCCGCCGTACGGAGGCGGAGGATCGGGACT
GGGCGGTGTTGGGATGCAAGCTCAGGCGCCGCCCCAGTCGTCGCCCAATC
CGCAGCAGAGCTGGTCACCTGTTGTGGGCGGATCAGTGTCCGCCGCCCTC
CTGCGCCAACAGTCGCTGCAGTCGCCACAGCAGCACCAGCAGCAGCATCA
GCAGCAGCACCAGCATCAGCAGCAGCATCAGAATCATCAGGCGCAGCAGC
TCGGCCAGCATCCGCATCCGTTCAACGACCTAGTCCTGCGCCTGCCCAAG
GGTCCCTGTCCGAATGGCTCCATTGGCTTTCAGATGCGCCGGGCAAGCTT
TCTAGACCAT

BO10021.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-RC 1179 CG31908-PC 1..1176 17..1192 5880 100 Plus
CG31908-RB 1179 CG31908-PB 1..1176 17..1192 5880 100 Plus
CG31908-RA 1179 CG31908-PA 1..1176 17..1192 5880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-RC 2135 CG31908-RC 613..1788 17..1192 5880 100 Plus
CG31908-RB 1821 CG31908-RB 299..1474 17..1192 5880 100 Plus
CG31908-RA 2033 CG31908-RA 511..1686 17..1192 5880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7025176..7025818 1192..550 3215 100 Minus
2L 23513712 2L 7026156..7026636 550..70 2405 100 Minus
2L 23513712 2L 7026724..7026777 70..17 270 100 Minus
X 23542271 X 10618460..10618520 1074..1014 185 86.9 Minus
Blast to na_te.dros performed 2014-11-27 14:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2638..2856 632..866 146 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6870..6917 801..845 134 79.2 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 837..911 282..357 125 64.5 Plus

BO10021.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:59 Download gff for BO10021.complete
Subject Subject Range Query Range Percent Splice Strand
CG31908-RB 1..1179 17..1196 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:47 Download gff for BO10021.complete
Subject Subject Range Query Range Percent Splice Strand
CG31908-RB 334..1523 5..1196 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:57 Download gff for BO10021.complete
Subject Subject Range Query Range Percent Splice Strand
CG31908-RA 520..1695 17..1194 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:59 Download gff for BO10021.complete
Subject Subject Range Query Range Percent Splice Strand
CG31908-RB 334..1523 5..1196 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:48 Download gff for BO10021.complete
Subject Subject Range Query Range Percent Splice Strand
CG31908-RA 511..1686 17..1194 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:48 Download gff for BO10021.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7025174..7025818 550..1194 99 <- Minus
2L 7026157..7026635 71..549 100 <- Minus
2L 7026724..7026777 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:57 Download gff for BO10021.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7025174..7025818 550..1194 99 <- Minus
arm_2L 7026157..7026635 71..549 100 <- Minus
arm_2L 7026724..7026777 17..70 100   Minus

BO10021.pep Sequence

Translation from 16 to 1210

> BO10021.pep
MSHGEDVLDNWEEIDEDGLSMTLQTKLQTSDPPVNKMKLLQRPQSVQESS
QILSSGDGGGGGGNGGGNPPPRQITIARKPQVPPAEVDSSTQQEQQQQPV
MMVLHKTTNDYDAATYCTPTSNQTVKILRRPAQAEERRDINGMRPKQPIK
TLKQREQEYAEARLRILGAAKNPEDDKPATPITPAVNSSSVAVSSAAPPV
TPPSAISNNNVINNNSSHPGGGMHRSSSAPKMSQVTPMYNNYNSYFPGLH
NQPGLNYYYPHNPQHQHQHQQQQQQQPSQHFNQRLPPYGGGGSGLGGVGM
QAQAPPQSSPNPQQSWSPVVGGSVSAALLRQQSLQSPQQHQQQHQQQHQH
QQQHQNHQAQQLGQHPHPFNDLVLRLPKGPCPNGSIGFQMRRASFLDH

BO10021.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-PC 392 CG31908-PC 1..392 1..392 2104 100 Plus
CG31908-PB 392 CG31908-PB 1..392 1..392 2104 100 Plus
CG31908-PA 392 CG31908-PA 1..392 1..392 2104 100 Plus
tlk-PG 1489 CG34412-PG 93..356 95..361 162 27.5 Plus
vvl-PC 713 CG10037-PC 439..695 132..382 161 26.4 Plus