Clone Sequence Records
BO10022.5prime Sequence
895 bp (794 high quality bases) assembled on 2006-04-19
> BO10022.5prime
GAAGTTATCAGTCGACATGAGCATACTATTGGCGCGCCATGTGGGCCAGC
TGAACAGCCTCCTGAAGACGGCGGCCACCGCCTCCTCGGTCTCCGCCCAC
AACAACTACTTCACCTACGTGCGGGAGCTGTCGCATCCCATCGCTCGAGA
GCCTCCAATCGTCAAGCCGGAAGAGGCCGTGGCATGTGTAAAATCCGGTG
ACACGGTTTTCGCCGGAGGAGCAGCCGCCACGCCCGTGGCTCTGCTGAAC
GCGATGGCCAAGCACGGAAAGAGCAACAACCTGGAGTGCGTCACGGTGTG
CCACATGCACACGGAGGGTCCTGGCGAGTACGCCAAGCCGGAGTACAAGG
ACCATTTCCGTTCAAACTCCTTCTTCATGGGCGCCAACGTGCGCAAGGCT
GTTGCCGACGGTCGTGGCGATAATGTGCCGATCTTCCTTCACGAGATCCC
GAATCTTTTCTACAAGCAGATCGTAAAGCCAGATGTGTCCTTCATCCACG
TGTCGCCGCCGGATAACCACGGCTACTGCTCCCTCGGCACCAGCGTCGAT
TGTGTGCGCGCTGCGCTGCTCAACTCGAAGCTCATTGTGGCTCANATCAA
TCCCAAGATGCCGCGCACCTTCGGCGATGCCATCATTCACAAGTCTCACT
TCGACCTCGCCATCGAGGTGACCGATGATCTGCCTCAGCACGGAACTGGT
AAGATTTCCGAAGTGGAGAAGAAGATCGGCAAGCTCATTGCCGAGAACCT
CGTCAAGGACGGCGCCACCCTGCAGATGGGCATTGGCAGCATCCCAGACG
CCGTACTCGCCGCCCTGCACAACCACAAGGATCTGGGCATCCACTCCGAG
ATGTTCGCCAACGGTGTCGTTGAGCTCGTGCGCAAGGGATGCGTC
BO10022.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7920-PA | 1434 | CG7920-RA | 1..879 | 17..895 | 4276 | 99.4 | Plus |
| CG7920-PB | 315 | CG7920-RB | 1..185 | 17..201 | 875 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:55:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7920-RC | 1791 | CG7920-RC | 170..1049 | 16..895 | 4329 | 99.4 | Plus |
| CG7920-RA | 1910 | CG7920-RA | 289..1168 | 16..895 | 4329 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30011669..30012062 | 590..197 | 1955 | 99.7 | Minus |
| 3R | 32079331 | 3R | 30011303..30011608 | 895..590 | 1504 | 99.3 | Minus |
| 3R | 32079331 | 3R | 30014811..30014996 | 201..16 | 900 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:55:04 has no hits.
BO10022.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:01 Download gff for
BO10022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:56 Download gff for
BO10022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:22:18 Download gff for
BO10022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 281..1168 | 9..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:19:28 Download gff for
BO10022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 281..1168 | 9..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:19:28 Download gff for
BO10022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30011303..30011607 | 591..895 | 99 | <- | Minus |
| 3R | 30011669..30012061 | 198..590 | 99 | <- | Minus |
| 3R | 30014815..30015004 | 9..197 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:22:18 Download gff for
BO10022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25837025..25837329 | 591..895 | 99 | <- | Minus |
| arm_3R | 25837391..25837783 | 198..590 | 99 | <- | Minus |
| arm_3R | 25840537..25840726 | 9..197 | 97 | | Minus |
BO10022.complete Sequence
1465 bp assembled on 2008-11-10
GenBank Submission: KX799615
> BO10022.complete
GAAGTTATCAGTCGACATGAGCAAACAATTGGCGCGCCATGTGGGCCAGC
TGAACAGCCTCCTGAAGACGGCGGCCACCGCCTCCTCGGTCTCCGCCCAC
AACAACTACTTCACCTACGTGCGGGAGCTGTCGCATCCCATCGCTCGAGA
GCCTCCAATCGTCAAGCCGGAAGAGGCCGTGGCATGTGTAAAATCCGGTG
ACACGGTTTTCGCCGGAGGAGCAGCCGCCACGCCCGTGGCTCTGCTGAAC
GCGATGGCCAAGCACGGAAAGAGCAACAACCTGGAGTGCGTCACGGTGTG
CCACATGCACACGGAGGGTCCTGGCGAGTACGCCAAGCCGGAGTACAAGG
ACCATTTCCGTTCAAACTCCTTCTTCATGGGCGCCAACGTGCGCAAGGCT
GTTGCCGACGGTCGTGGCGATAATGTGCCGATCTTCCTTCACGAGATCCC
GAATCTTTTCTACAAGCAGATCGTAAAGCCAGATGTGTCCTTCATCCACG
TGTCGCCGCCGGATAACCACGGCTACTGCTCCCTCGGCACCAGCGTCGAT
TGTGTGCGCGCTGCGCTGCTCAACTCGAAGCTCATTGTGGCTCAAATCAA
TCCCAAGATGCCGCGCACCTTCGGCGATGCCATCATTCACAAGTCTCACT
TCGACCTCGCCATCGAGGTGACCGATGATCTGCCTCAGCACGGAACTGGT
AAGATTTCCGAAGTGGAGAAGAAGATCGGCAAGCTCATTGCCGAGAACCT
CGTCAAGGACGGCGCCACCCTGCAGATGGGCATTGGCAGCATCCCAGACG
CCGTACTCGCCGCCCTGCACAACCACAAGGATCTGGGCATCCACTCCGAG
ATGTTCGCCAACGGTGTCGTTGAGCTCGTGCGCAAGGGATGCGTCACCAA
CAGCAAGAAGAAGATGCACCAGGGCAGAATTGTGGGCTCCTTCCTCATCG
GTGACAAGGCTCTGTACGACTTCGTGGACAACAATCCCTTCATCGAGATG
TACGCCATCGACTATGTGAACAACACCAGCATTGTGAAACAGCAGCCTCG
AATGACGGCCATCAACAGCTGCATCGAGGTGGATCTGACTGGACAGGTGT
GCTCAGACTCGATTGGTCCCCGCTTCTACTCCGGCTTCGGCGGACAGGTG
GACTTCATTCGCGGAGCGGCGGAGGGTCTCGATGGACTGGGTGTGCCAAT
TATTGCCATGCCATCGACCACCAACAAGGGCGAGAGCAAGATTGTTCCCA
CGCTGAAGGAAGGCGCTGGCGTCGTCACTTCGCGTGCCCACGTCCACTAC
GTCGTCACGGAGCATGGAATCGCTTCGCTGTTCGGCAAGAACGTGCGACA
GAGGATGTACGAACTTATCCAGATCGCCGATCCCAAGCACCGCGAGACCC
TGGAGAAACAAGCCTTCGAGCGCATCAAGGTTATGCCCTCGCCGAACGCA
AGCTTTCTAGACCAT
BO10022.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7920-RC | 1434 | CG7920-PC | 1..1431 | 17..1447 | 7050 | 99.5 | Plus |
| CG7920-RA | 1434 | CG7920-PA | 1..1431 | 17..1447 | 7050 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7920-RC | 1791 | CG7920-RC | 170..1601 | 16..1447 | 7055 | 99.5 | Plus |
| CG7920-RA | 1910 | CG7920-RA | 289..1720 | 16..1447 | 7055 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30010666..30011118 | 1447..995 | 2205 | 99.1 | Minus |
| 3R | 32079331 | 3R | 30011203..30011608 | 995..590 | 2000 | 99.5 | Minus |
| 3R | 32079331 | 3R | 30011669..30012062 | 590..197 | 1955 | 99.7 | Minus |
| 3R | 32079331 | 3R | 30014811..30014996 | 201..16 | 930 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 4550..4627 | 1108..1185 | 111 | 60.3 | Plus |
BO10022.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:24 Download gff for
BO10022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 361..1805 | 9..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:56 Download gff for
BO10022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 290..1720 | 17..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:27 Download gff for
BO10022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 370..1800 | 17..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:15 Download gff for
BO10022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 290..1720 | 17..1449 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:15 Download gff for
BO10022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30010664..30011117 | 996..1449 | 98 | <- | Minus |
| 3R | 30011203..30011607 | 591..995 | 99 | <- | Minus |
| 3R | 30011669..30012061 | 198..590 | 99 | <- | Minus |
| 3R | 30014815..30014995 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:56 Download gff for
BO10022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25836386..25836839 | 996..1449 | 98 | <- | Minus |
| arm_3R | 25836925..25837329 | 591..995 | 99 | <- | Minus |
| arm_3R | 25837391..25837783 | 198..590 | 99 | <- | Minus |
| arm_3R | 25840537..25840717 | 17..197 | 100 | | Minus |
BO10022.pep Sequence
Translation from 16 to 1465
> BO10022.pep
MSKQLARHVGQLNSLLKTAATASSVSAHNNYFTYVRELSHPIAREPPIVK
PEEAVACVKSGDTVFAGGAAATPVALLNAMAKHGKSNNLECVTVCHMHTE
GPGEYAKPEYKDHFRSNSFFMGANVRKAVADGRGDNVPIFLHEIPNLFYK
QIVKPDVSFIHVSPPDNHGYCSLGTSVDCVRAALLNSKLIVAQINPKMPR
TFGDAIIHKSHFDLAIEVTDDLPQHGTGKISEVEKKIGKLIAENLVKDGA
TLQMGIGSIPDAVLAALHNHKDLGIHSEMFANGVVELVRKGCVTNSKKKM
HQGRIVGSFLIGDKALYDFVDNNPFIEMYAIDYVNNTSIVKQQPRMTAIN
SCIEVDLTGQVCSDSIGPRFYSGFGGQVDFIRGAAEGLDGLGVPIIAMPS
TTNKGESKIVPTLKEGAGVVTSRAHVHYVVTEHGIASLFGKNVRQRMYEL
IQIADPKHRETLEKQAFERIKVMPSPNASFLDH
BO10022.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7920-PC | 477 | CG7920-PC | 1..477 | 1..477 | 2480 | 100 | Plus |
| CG7920-PA | 477 | CG7920-PA | 1..477 | 1..477 | 2480 | 100 | Plus |
