Clone BO10024 Report

Search the DGRC for BO10024

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:100
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG1461-RA
Protein status:BO10024.pep: validated full length
Sequenced Size:1537

Clone Sequence Records

BO10024.3prime Sequence

905 bp (834 high quality bases) assembled on 2006-04-19

> BO10024.3prime
ATGGTCTAGAAAGCTTGCAAAGGCCACATCATCGCAGTCGAGCAGTCCGT
GCTCAATGAAATTGCGCGACTCCTTTTTGTAGTGGCGATCGCAGAACTCG
GCAATCCTGGAGCACGCCTCCTCGATCATTGCCCCGGGCACAGTAAGTAC
GATCCGCACGTATCCCGGGTACTCAAAGCAGCTGCCCGGCAGACAGAAGA
CACTCTGCTCATTCACCATCTCCTGGACAAAGTGGGTGTCGTCCTTGAAT
TCCGGGAAGCGTTCGATGCTCACGCCTATCATCATGTACATGGCTCCATT
GGGCATTACGGGATCGAGGCCACGCACCTGTTTCAGCATCTTGTAGGCCA
GCATGGCATTCGAGTGGAGCACATCAATCACGCCGTCAAAATAAGACTGC
GGTGTCTTGGTCAGGATATCGGGCAGGGCACCCTGAATGATGGTATTGGA
GCCCAGAATGCGACCACACATGTTCTTTAGACCGACAATGGCATCGCGCA
AACGATTCTTGCGATCGTGCACTATGATCCAACCCATTCGCCAACCGGGA
ACCAGGAAGCGTTTGGTCAACCCGCCACAGGAGAGAACTGGAACCTCCGT
GGTCAGGCTGCTCACGGCCAAGTGCTTGGAGCCGGGGAACACAAAGTGCT
CATAGATCTCATCGGCAATGATGGGCAGATAGTGGCGTTCGCAGATGGCT
ATCAACTCGCGCAGATGCTTCTCATCGAAGACGCTGCCACAGGGATTGCT
CGGATTGTTGATCAAAAGGGCGGCGGTGTTCTCATCGATCAGGCTCTCTA
GCTGAACGAGATCGGCGCGCCACTGCTGATCGGGCAGAAGATCGTAGTAG
CGCACCTCGATATCCAAGCCTGGGCCAGCGTATAGTACAAACAGAAACCC
GGTCG

BO10024.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1461-PA 1506 CG1461-RA 652..1503 870..19 4260 100 Minus
CG1461-PA 1506 CG1461-RA 616..652 905..869 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1461-RB 2509 CG1461-RB 978..1865 905..19 4415 99.9 Minus
CG1461-RA 1974 CG1461-RA 978..1865 905..19 4415 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14264391..14264735 363..19 1725 100 Minus
X 23542271 X 14264029..14264324 659..364 1480 100 Minus
X 23542271 X 14263716..14263964 905..658 1195 99.6 Minus
Blast to na_te.dros performed on 2015-02-11 12:41:14 has no hits.

BO10024.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:03 Download gff for BO10024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1461-PA 616..1506 16..905 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:59 Download gff for BO10024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1461-PA 616..1506 16..905 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:46:13 Download gff for BO10024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 978..1871 12..905 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:29:45 Download gff for BO10024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 978..1871 12..905 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:29:45 Download gff for BO10024.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14263716..14263964 658..905 99 -> Minus
X 14264031..14264324 364..657 100 -> Minus
X 14264391..14264741 12..363 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:46:13 Download gff for BO10024.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14157749..14157997 658..905 99 -> Minus
arm_X 14158064..14158357 364..657 100 -> Minus
arm_X 14158424..14158774 12..363 99   Minus

BO10024.5prime Sequence

778 bp (777 high quality bases) assembled on 2006-04-19

> BO10024.5prime
GAAGTTATCAGTCGACATGCCCAGCAGTTTTGCCAACGAGAGTCAGTTCC
GATACCAGAGCAGCCGCAATCGTGCCAGCTGCACAAGCCGGAGTCCCAGC
GAGCCGGAATCCCCGGCGCCGGTGACGCCCAATTGCGATGTAGTCGATCA
GGCGCTGGCCGAGCTGCAGCTCCAATCGCAGGACATACGCAAGCAACAGG
ACCTGGTGGACACCACAGCCACGAGCAGCAGCAGCCGAAAGCGTTCCGGA
TGGGAGATAAAGGGCTCCAAGCTATCCCTTAACACGCACAATCGCATTCG
GAACATTGTCGAGTCGCTAAAGATCAAACCGAATCCGGAGAAGCCCATGA
TACCGCTGTCCATTGGTGATCCCACAACCTTTGGCAATCTAAAAGCCGCC
GATGAGACAATGAAGGCGGTGCTGCATTCCCTGGAGAGCGGCAAGTACAA
TGGGTATGCCAGCACCCAGGGTCACGAGATAGCCCGCAAAGCGGTGGCCA
AATACAGTGCCCACCAGCGTCCCGACGGAGAGATCGATGCCAACGAGGTG
GTGCTGTGCAGCGGCTGCTCCTCCGCCTTGGAGTACTGCATCCTGGCGCT
GGCGGATCGTGGTCAGAATGTTCTGGTGCCGCGACCGGGTTTCTGTTTGT
ACTATACGCTGGCCCAGGGCTTGGATATCGAGGTGCGCTACTACGATCTT
CTGCCCGATCAGCAGTGGCGCGCCGATCTCGTTCAGCTAGAGAGCCTGAT
CGATGAGAACACCGCCGCCCTTTTGATC

BO10024.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1461-PA 1506 CG1461-RA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1461-RB 2509 CG1461-RB 363..1124 17..778 3810 100 Plus
CG1461-RA 1974 CG1461-RA 363..1124 17..778 3810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14263449..14263862 365..778 2070 100 Plus
X 23542271 X 14261585..14261937 17..369 1765 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:54:57 has no hits.

BO10024.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:04 Download gff for BO10024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1461-PA 1..762 17..778 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:38:01 Download gff for BO10024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1461-PA 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:22:17 Download gff for BO10024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 357..1124 11..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:19:00 Download gff for BO10024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 357..1124 11..778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:19:00 Download gff for BO10024.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14261579..14261933 11..365 99 -> Plus
X 14263450..14263862 366..778 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:22:17 Download gff for BO10024.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14155612..14155966 11..365 99 -> Plus
arm_X 14157483..14157895 366..778 100   Plus

BO10024.complete Sequence

1537 bp (1537 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631635

> BO10024.complete
GAAGTTATCAGTCGACATGCCCAGCAGTTTTGCCAACGAGAGTCAGTTCC
GATACCAGAGCAGCCGCAATCGTGCCAGCTGCACAAGCCGGAGTCCCAGC
GAGCCGGAATCCCCGGCGCCGGTGACGCCCAATTGCGATGTAGTCGATCA
GGCGCTGGCCGAGCTGCAGCTCCAATCGCAGGACATACGCAAGCAACAGG
ACCTGGTGGACACCACAGCCACGAGCAGCAGCAGCCGAAAGCGTTCCGGA
TGGGAGATAAAGGGCTCCAAGCTATCCCTTAACACGCACAATCGCATTCG
GAACATTGTCGAGTCGCTAAAGATCAAACCGAATCCGGAGAAGCCCATGA
TACCGCTGTCCATTGGTGATCCCACAACCTTTGGCAATCTAAAAGCCGCC
GATGAGACAATGAAGGCGGTGCTGCATTCCCTGGAGAGCGGCAAGTACAA
TGGGTATGCCAGCACCCAGGGTCACGAGATAGCCCGCAAAGCGGTGGCCA
AATACAGTGCCCACCAGCGTCCCGACGGAGAGATCGATGCCAACGAGGTG
GTGCTGTGCAGCGGCTGCTCCTCCGCCTTGGAGTACTGCATCCTGGCGCT
GGCGGATCGTGGTCAGAATGTTCTGGTGCCGCGACCGGGTTTCTGTTTGT
ACTATACGCTGGCCCAGGGCTTGGATATCGAGGTGCGCTACTACGATCTT
CTGCCCGATCAGCAGTGGCGCGCCGATCTCGTTCAGCTAGAGAGCCTGAT
CGATGAGAACACCGCCGCCCTTTTGATCAACAATCCGAGCAATCCCTGTG
GCAGCGTCTTCGATGAGAAGCATCTGCGCGAGTTGATAGCCATCTGCGAA
CGCCACTATCTGCCCATCATTGCCGATGAGATCTATGAGCACTTTGTGTT
CCCCGGCTCCAAGCACTTGGCCGTGAGCAGCCTGACCACGGAGGTTCCAG
TTCTCTCCTGTGGCGGGTTGACCAAACGCTTCCTGGTTCCCGGTTGGCGA
ATGGGTTGGATCATAGTGCACGATCGCAAGAATCGTTTGCGCGATGCCAT
TGTCGGTCTAAAGAACATGTGTGGTCGCATTCTGGGCTCCAATACCATCA
TTCAGGGTGCCCTGCCCGATATCCTGACCAAGACACCGCAGTCTTATTTT
GACGGCGTGATTGATGTGCTCCACTCGAATGCCATGCTGGCCTACAAGAT
GCTGAAACAGGTGCGTGGCCTCGATCCCGTAATGCCCAATGGAGCCATGT
ACATGATGATAGGCGTGAGCATCGAACGCTTCCCGGAATTCAAGGACGAC
ACCCACTTTGTCCAGGAGATGGTGAATGAGCAGAGTGTCTTCTGTCTGCC
GGGCAGCTGCTTTGAGTACCCGGGATACGTGCGGATCGTACTTACTGTGC
CCGGGGCAATGATCGAGGAGGCGTGCTCCAGGATTGCCGAGTTCTGCGAT
CGCCACTACAAAAAGGAGTCGCGCAATTTCATTGAGCACGGACTGCTCGA
CTGCGATGATGTGGCCTTTGCAAGCTTTCTAGACCAT

BO10024.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1461-RB 1506 CG1461-PB 1..1503 17..1519 7515 100 Plus
CG1461-RA 1506 CG1461-PA 1..1503 17..1519 7515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1461-RB 2509 CG1461-RB 363..1865 17..1519 7515 100 Plus
CG1461-RA 1974 CG1461-RA 363..1865 17..1519 7515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14263449..14263964 365..880 2580 100 Plus
X 23542271 X 14261585..14261937 17..369 1765 100 Plus
X 23542271 X 14264391..14264735 1175..1519 1725 100 Plus
X 23542271 X 14264029..14264324 879..1174 1480 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:13:37 has no hits.

BO10024.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:00 Download gff for BO10024.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 1..1506 17..1522 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:48 Download gff for BO10024.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 357..1871 11..1526 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:07 Download gff for BO10024.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 363..1865 17..1521 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:00 Download gff for BO10024.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 357..1871 11..1526 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:21 Download gff for BO10024.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 363..1865 17..1521 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:21 Download gff for BO10024.complete
Subject Subject Range Query Range Percent Splice Strand
X 14264391..14264735 1175..1521 99   Plus
X 14261585..14261933 17..365 100 -> Plus
X 14263450..14263964 366..880 100 -> Plus
X 14264031..14264324 881..1174 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:07 Download gff for BO10024.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14158424..14158768 1175..1521 99   Plus
arm_X 14155618..14155966 17..365 100 -> Plus
arm_X 14157483..14157997 366..880 100 -> Plus
arm_X 14158064..14158357 881..1174 100 -> Plus

BO10024.pep Sequence

Translation from 16 to 1537

> BO10024.pep
MPSSFANESQFRYQSSRNRASCTSRSPSEPESPAPVTPNCDVVDQALAEL
QLQSQDIRKQQDLVDTTATSSSSRKRSGWEIKGSKLSLNTHNRIRNIVES
LKIKPNPEKPMIPLSIGDPTTFGNLKAADETMKAVLHSLESGKYNGYAST
QGHEIARKAVAKYSAHQRPDGEIDANEVVLCSGCSSALEYCILALADRGQ
NVLVPRPGFCLYYTLAQGLDIEVRYYDLLPDQQWRADLVQLESLIDENTA
ALLINNPSNPCGSVFDEKHLRELIAICERHYLPIIADEIYEHFVFPGSKH
LAVSSLTTEVPVLSCGGLTKRFLVPGWRMGWIIVHDRKNRLRDAIVGLKN
MCGRILGSNTIIQGALPDILTKTPQSYFDGVIDVLHSNAMLAYKMLKQVR
GLDPVMPNGAMYMMIGVSIERFPEFKDDTHFVQEMVNEQSVFCLPGSCFE
YPGYVRIVLTVPGAMIEEACSRIAEFCDRHYKKESRNFIEHGLLDCDDVA
FASFLDH

BO10024.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1461-PB 501 CG1461-PB 1..501 1..501 2630 100 Plus
CG1461-PA 501 CG1461-PA 1..501 1..501 2630 100 Plus
CG6950-PD 450 CG6950-PD 126..415 176..449 225 23.5 Plus
CG6950-PB 450 CG6950-PB 126..415 176..449 225 23.5 Plus
CG6950-PA 450 CG6950-PA 126..415 176..449 225 23.5 Plus