Clone Sequence Records
BO10024.3prime Sequence
905 bp (834 high quality bases) assembled on 2006-04-19
> BO10024.3prime
ATGGTCTAGAAAGCTTGCAAAGGCCACATCATCGCAGTCGAGCAGTCCGT
GCTCAATGAAATTGCGCGACTCCTTTTTGTAGTGGCGATCGCAGAACTCG
GCAATCCTGGAGCACGCCTCCTCGATCATTGCCCCGGGCACAGTAAGTAC
GATCCGCACGTATCCCGGGTACTCAAAGCAGCTGCCCGGCAGACAGAAGA
CACTCTGCTCATTCACCATCTCCTGGACAAAGTGGGTGTCGTCCTTGAAT
TCCGGGAAGCGTTCGATGCTCACGCCTATCATCATGTACATGGCTCCATT
GGGCATTACGGGATCGAGGCCACGCACCTGTTTCAGCATCTTGTAGGCCA
GCATGGCATTCGAGTGGAGCACATCAATCACGCCGTCAAAATAAGACTGC
GGTGTCTTGGTCAGGATATCGGGCAGGGCACCCTGAATGATGGTATTGGA
GCCCAGAATGCGACCACACATGTTCTTTAGACCGACAATGGCATCGCGCA
AACGATTCTTGCGATCGTGCACTATGATCCAACCCATTCGCCAACCGGGA
ACCAGGAAGCGTTTGGTCAACCCGCCACAGGAGAGAACTGGAACCTCCGT
GGTCAGGCTGCTCACGGCCAAGTGCTTGGAGCCGGGGAACACAAAGTGCT
CATAGATCTCATCGGCAATGATGGGCAGATAGTGGCGTTCGCAGATGGCT
ATCAACTCGCGCAGATGCTTCTCATCGAAGACGCTGCCACAGGGATTGCT
CGGATTGTTGATCAAAAGGGCGGCGGTGTTCTCATCGATCAGGCTCTCTA
GCTGAACGAGATCGGCGCGCCACTGCTGATCGGGCAGAAGATCGTAGTAG
CGCACCTCGATATCCAAGCCTGGGCCAGCGTATAGTACAAACAGAAACCC
GGTCG
BO10024.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1461-PA | 1506 | CG1461-RA | 652..1503 | 870..19 | 4260 | 100 | Minus |
CG1461-PA | 1506 | CG1461-RA | 616..652 | 905..869 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1461-RB | 2509 | CG1461-RB | 978..1865 | 905..19 | 4415 | 99.9 | Minus |
CG1461-RA | 1974 | CG1461-RA | 978..1865 | 905..19 | 4415 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14264391..14264735 | 363..19 | 1725 | 100 | Minus |
X | 23542271 | X | 14264029..14264324 | 659..364 | 1480 | 100 | Minus |
X | 23542271 | X | 14263716..14263964 | 905..658 | 1195 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:41:14 has no hits.
BO10024.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:03 Download gff for
BO10024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1461-PA | 616..1506 | 16..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:37:59 Download gff for
BO10024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1461-PA | 616..1506 | 16..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:46:13 Download gff for
BO10024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1461-RA | 978..1871 | 12..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:29:45 Download gff for
BO10024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1461-RA | 978..1871 | 12..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:29:45 Download gff for
BO10024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14263716..14263964 | 658..905 | 99 | -> | Minus |
X | 14264031..14264324 | 364..657 | 100 | -> | Minus |
X | 14264391..14264741 | 12..363 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:46:13 Download gff for
BO10024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14157749..14157997 | 658..905 | 99 | -> | Minus |
arm_X | 14158064..14158357 | 364..657 | 100 | -> | Minus |
arm_X | 14158424..14158774 | 12..363 | 99 | | Minus |
BO10024.5prime Sequence
778 bp (777 high quality bases) assembled on 2006-04-19
> BO10024.5prime
GAAGTTATCAGTCGACATGCCCAGCAGTTTTGCCAACGAGAGTCAGTTCC
GATACCAGAGCAGCCGCAATCGTGCCAGCTGCACAAGCCGGAGTCCCAGC
GAGCCGGAATCCCCGGCGCCGGTGACGCCCAATTGCGATGTAGTCGATCA
GGCGCTGGCCGAGCTGCAGCTCCAATCGCAGGACATACGCAAGCAACAGG
ACCTGGTGGACACCACAGCCACGAGCAGCAGCAGCCGAAAGCGTTCCGGA
TGGGAGATAAAGGGCTCCAAGCTATCCCTTAACACGCACAATCGCATTCG
GAACATTGTCGAGTCGCTAAAGATCAAACCGAATCCGGAGAAGCCCATGA
TACCGCTGTCCATTGGTGATCCCACAACCTTTGGCAATCTAAAAGCCGCC
GATGAGACAATGAAGGCGGTGCTGCATTCCCTGGAGAGCGGCAAGTACAA
TGGGTATGCCAGCACCCAGGGTCACGAGATAGCCCGCAAAGCGGTGGCCA
AATACAGTGCCCACCAGCGTCCCGACGGAGAGATCGATGCCAACGAGGTG
GTGCTGTGCAGCGGCTGCTCCTCCGCCTTGGAGTACTGCATCCTGGCGCT
GGCGGATCGTGGTCAGAATGTTCTGGTGCCGCGACCGGGTTTCTGTTTGT
ACTATACGCTGGCCCAGGGCTTGGATATCGAGGTGCGCTACTACGATCTT
CTGCCCGATCAGCAGTGGCGCGCCGATCTCGTTCAGCTAGAGAGCCTGAT
CGATGAGAACACCGCCGCCCTTTTGATC
BO10024.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1461-PA | 1506 | CG1461-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1461-RB | 2509 | CG1461-RB | 363..1124 | 17..778 | 3810 | 100 | Plus |
CG1461-RA | 1974 | CG1461-RA | 363..1124 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14263449..14263862 | 365..778 | 2070 | 100 | Plus |
X | 23542271 | X | 14261585..14261937 | 17..369 | 1765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:54:57 has no hits.
BO10024.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:04 Download gff for
BO10024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1461-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:38:01 Download gff for
BO10024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1461-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:22:17 Download gff for
BO10024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1461-RA | 357..1124 | 11..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:19:00 Download gff for
BO10024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1461-RA | 357..1124 | 11..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:19:00 Download gff for
BO10024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14261579..14261933 | 11..365 | 99 | -> | Plus |
X | 14263450..14263862 | 366..778 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:22:17 Download gff for
BO10024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14155612..14155966 | 11..365 | 99 | -> | Plus |
arm_X | 14157483..14157895 | 366..778 | 100 | | Plus |
BO10024.complete Sequence
1537 bp (1537 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631635
> BO10024.complete
GAAGTTATCAGTCGACATGCCCAGCAGTTTTGCCAACGAGAGTCAGTTCC
GATACCAGAGCAGCCGCAATCGTGCCAGCTGCACAAGCCGGAGTCCCAGC
GAGCCGGAATCCCCGGCGCCGGTGACGCCCAATTGCGATGTAGTCGATCA
GGCGCTGGCCGAGCTGCAGCTCCAATCGCAGGACATACGCAAGCAACAGG
ACCTGGTGGACACCACAGCCACGAGCAGCAGCAGCCGAAAGCGTTCCGGA
TGGGAGATAAAGGGCTCCAAGCTATCCCTTAACACGCACAATCGCATTCG
GAACATTGTCGAGTCGCTAAAGATCAAACCGAATCCGGAGAAGCCCATGA
TACCGCTGTCCATTGGTGATCCCACAACCTTTGGCAATCTAAAAGCCGCC
GATGAGACAATGAAGGCGGTGCTGCATTCCCTGGAGAGCGGCAAGTACAA
TGGGTATGCCAGCACCCAGGGTCACGAGATAGCCCGCAAAGCGGTGGCCA
AATACAGTGCCCACCAGCGTCCCGACGGAGAGATCGATGCCAACGAGGTG
GTGCTGTGCAGCGGCTGCTCCTCCGCCTTGGAGTACTGCATCCTGGCGCT
GGCGGATCGTGGTCAGAATGTTCTGGTGCCGCGACCGGGTTTCTGTTTGT
ACTATACGCTGGCCCAGGGCTTGGATATCGAGGTGCGCTACTACGATCTT
CTGCCCGATCAGCAGTGGCGCGCCGATCTCGTTCAGCTAGAGAGCCTGAT
CGATGAGAACACCGCCGCCCTTTTGATCAACAATCCGAGCAATCCCTGTG
GCAGCGTCTTCGATGAGAAGCATCTGCGCGAGTTGATAGCCATCTGCGAA
CGCCACTATCTGCCCATCATTGCCGATGAGATCTATGAGCACTTTGTGTT
CCCCGGCTCCAAGCACTTGGCCGTGAGCAGCCTGACCACGGAGGTTCCAG
TTCTCTCCTGTGGCGGGTTGACCAAACGCTTCCTGGTTCCCGGTTGGCGA
ATGGGTTGGATCATAGTGCACGATCGCAAGAATCGTTTGCGCGATGCCAT
TGTCGGTCTAAAGAACATGTGTGGTCGCATTCTGGGCTCCAATACCATCA
TTCAGGGTGCCCTGCCCGATATCCTGACCAAGACACCGCAGTCTTATTTT
GACGGCGTGATTGATGTGCTCCACTCGAATGCCATGCTGGCCTACAAGAT
GCTGAAACAGGTGCGTGGCCTCGATCCCGTAATGCCCAATGGAGCCATGT
ACATGATGATAGGCGTGAGCATCGAACGCTTCCCGGAATTCAAGGACGAC
ACCCACTTTGTCCAGGAGATGGTGAATGAGCAGAGTGTCTTCTGTCTGCC
GGGCAGCTGCTTTGAGTACCCGGGATACGTGCGGATCGTACTTACTGTGC
CCGGGGCAATGATCGAGGAGGCGTGCTCCAGGATTGCCGAGTTCTGCGAT
CGCCACTACAAAAAGGAGTCGCGCAATTTCATTGAGCACGGACTGCTCGA
CTGCGATGATGTGGCCTTTGCAAGCTTTCTAGACCAT
BO10024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1461-RB | 1506 | CG1461-PB | 1..1503 | 17..1519 | 7515 | 100 | Plus |
CG1461-RA | 1506 | CG1461-PA | 1..1503 | 17..1519 | 7515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1461-RB | 2509 | CG1461-RB | 363..1865 | 17..1519 | 7515 | 100 | Plus |
CG1461-RA | 1974 | CG1461-RA | 363..1865 | 17..1519 | 7515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14263449..14263964 | 365..880 | 2580 | 100 | Plus |
X | 23542271 | X | 14261585..14261937 | 17..369 | 1765 | 100 | Plus |
X | 23542271 | X | 14264391..14264735 | 1175..1519 | 1725 | 100 | Plus |
X | 23542271 | X | 14264029..14264324 | 879..1174 | 1480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:13:37 has no hits.
BO10024.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:00 Download gff for
BO10024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1461-RA | 1..1506 | 17..1522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:48 Download gff for
BO10024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1461-RA | 357..1871 | 11..1526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:07 Download gff for
BO10024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1461-RA | 363..1865 | 17..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:00 Download gff for
BO10024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1461-RA | 357..1871 | 11..1526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:21 Download gff for
BO10024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1461-RA | 363..1865 | 17..1521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:21 Download gff for
BO10024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14264391..14264735 | 1175..1521 | 99 | | Plus |
X | 14261585..14261933 | 17..365 | 100 | -> | Plus |
X | 14263450..14263964 | 366..880 | 100 | -> | Plus |
X | 14264031..14264324 | 881..1174 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:07 Download gff for
BO10024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14158424..14158768 | 1175..1521 | 99 | | Plus |
arm_X | 14155618..14155966 | 17..365 | 100 | -> | Plus |
arm_X | 14157483..14157997 | 366..880 | 100 | -> | Plus |
arm_X | 14158064..14158357 | 881..1174 | 100 | -> | Plus |
BO10024.pep Sequence
Translation from 16 to 1537
> BO10024.pep
MPSSFANESQFRYQSSRNRASCTSRSPSEPESPAPVTPNCDVVDQALAEL
QLQSQDIRKQQDLVDTTATSSSSRKRSGWEIKGSKLSLNTHNRIRNIVES
LKIKPNPEKPMIPLSIGDPTTFGNLKAADETMKAVLHSLESGKYNGYAST
QGHEIARKAVAKYSAHQRPDGEIDANEVVLCSGCSSALEYCILALADRGQ
NVLVPRPGFCLYYTLAQGLDIEVRYYDLLPDQQWRADLVQLESLIDENTA
ALLINNPSNPCGSVFDEKHLRELIAICERHYLPIIADEIYEHFVFPGSKH
LAVSSLTTEVPVLSCGGLTKRFLVPGWRMGWIIVHDRKNRLRDAIVGLKN
MCGRILGSNTIIQGALPDILTKTPQSYFDGVIDVLHSNAMLAYKMLKQVR
GLDPVMPNGAMYMMIGVSIERFPEFKDDTHFVQEMVNEQSVFCLPGSCFE
YPGYVRIVLTVPGAMIEEACSRIAEFCDRHYKKESRNFIEHGLLDCDDVA
FASFLDH
BO10024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1461-PB | 501 | CG1461-PB | 1..501 | 1..501 | 2630 | 100 | Plus |
CG1461-PA | 501 | CG1461-PA | 1..501 | 1..501 | 2630 | 100 | Plus |
CG6950-PD | 450 | CG6950-PD | 126..415 | 176..449 | 225 | 23.5 | Plus |
CG6950-PB | 450 | CG6950-PB | 126..415 | 176..449 | 225 | 23.5 | Plus |
CG6950-PA | 450 | CG6950-PA | 126..415 | 176..449 | 225 | 23.5 | Plus |