Clone Sequence Records
BO10026.3prime Sequence
958 bp (824 high quality bases) assembled on 2006-04-19
> BO10026.3prime
ATGGTCTAGAAAGCTTGCTATGTAATTAAAGTCCACACAGTCGAGGATCA
CCTCGCGTATACGCTGTTTAAATGTAGCCTCGTTGCCCGCGCCCAGGAAA
CCAGCTCCATGGAGATCCGTAGTGGCCCCCGCCTCGATGCGCTCGCTAAT
TGCCTGAAGGTCGGGCACATCCTGACCCTGCATCGTTACAATGGGTAGAA
CCATCATGGCGAGAAGCAGGCCCACAGCCGCTTTGGTAGCCACCTGTTCA
TCGAATGCAGGACGGGGAAAAAGTTGCTCCACCCGCTCGCCTAGTCTAAT
CAGCTGCAGGCCCAACTCTTCATAGTAATCCTCGAGCATATTTTCGAGGT
GTCGCTGCCGGAATCGCCGCGAAGTGCAAGTGAAGAGGAAGTAAGCTAGA
TCGGTGACCGGCGAGGCATATCGCATCAGTTGCCAGTCGATCAGGCGCAC
GTCCTCGAGCTCGCCCCGCTCTGTACTCTTGTAGAGAATGTTGTTATTCC
AGCAATCGCCGTGGCAAATAACAGCGAAGGGTTCGCAATTGAATCCGCTG
ACCAAAGGCAGCAGCAGCTCAAAGTACGATCCTCTGGCGAAGTACGCCTC
CAGACGAACTCTGTATGCATCATCCGCCGGTGCGAGCAGTGCGGATAGGG
CGCTTTCCTTCAGATTCTCGAAGTAGACCCCCAAGGCATGATCATCGCGT
CGCTGCTCAAAGATATCCACCAGCTGCTGCAGTTGTTGCATTTTCTCGGG
CAACTGCCGTTTCCCGGCCAATGATATAGCATGTAATTTGGCATAGGTGA
GCATTACGCGACGCACATGCTCGACGGATAGGTCGAGAAAGCGATTGTGC
AGTGAGAAGCCGGCACAAGACAGATCCTCCAGCACGATGCACTCGTTGGG
GTCATCCTGGCGAGTTCGGAACAGAGCGCGTGCTGCCGGAAACGATCATC
TCCGATTA
BO10026.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1561-PA | 1293 | CG1561-RA | 392..1290 | 917..19 | 4470 | 99.8 | Minus |
| CG1561-PB | 1908 | CG1561-RB | 1007..1905 | 917..19 | 4470 | 99.8 | Minus |
| CG1561-PA | 1293 | CG1561-RA | 350..388 | 958..920 | 195 | 100 | Minus |
| CG1561-PB | 1908 | CG1561-RB | 965..1003 | 958..920 | 195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1561-RB | 2160 | CG1561-RB | 980..1920 | 958..19 | 4650 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11582533..11583196 | 296..958 | 3240 | 99.5 | Plus |
| X | 23542271 | X | 11582197..11582475 | 19..297 | 1395 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:15:28 has no hits.
BO10026.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:07 Download gff for
BO10026.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-PB | 966..1908 | 18..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:38:05 Download gff for
BO10026.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-PB | 966..1908 | 18..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:34:14 Download gff for
BO10026.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 981..1920 | 19..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:58:16 Download gff for
BO10026.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 981..1920 | 19..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:58:16 Download gff for
BO10026.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11582197..11582473 | 19..295 | 100 | <- | Plus |
| X | 11582533..11583195 | 296..957 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:34:14 Download gff for
BO10026.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11476230..11476506 | 19..295 | 100 | <- | Plus |
| arm_X | 11476566..11477228 | 296..957 | 99 | | Plus |
BO10026.5prime Sequence
934 bp (791 high quality bases) assembled on 2006-04-19
> BO10026.5prime
GAAGTTATCAGTCGACATGGAGAGTCCTGTAGAGCAACAAGAGGACACAG
CCAAGCCAGACGAAGATCTGCCCAACGAGCAGGTTACACAGTTCCTTCGC
CAACTGGTCAGCCAGCTGTGGCCAGAGCTGGGCGCCAATCCGGAACTGCG
TCTGGAAAGGGCGAGTGCCAAGGGCGACAACTATTTGGGCGTGGTGTGGC
GCCTACAGGCGGCATCCGATTCGAAACGCAGCCTGGTGGTTAAACTGCCG
CCACAGAATCGCGTGCGCCGCAAGCAATTCTTTGCACGACCATGTTTCCT
GCGCGAGACGGCAGCATATGAGGTCTTTCTGCCGCTGACTGCGTTAATTC
AGGATAAGTGGAAGATAATCGGAGATGATCGTTTCCGGCAGCACGCGCTC
TGTTTCGGAACTCGCCAGGATGAGCCCAACGAGTGCATCGTGCTGGAGGA
TCTGTCTTGTGCCGGCTTCTCACTGCACAATCGCTTTCTCGACCTATCCG
TCGAGCATGTGCGTCGCGTAATGCTCACCTATGCCAAATTACATGCTATA
TCATTGGCCGGGAAACGGCAGTTGCCCGAGAAAATGCAACAACTGCAGCA
GCTGGTGGATATCTTTGAGCAGCGACGCGATGATCATGCCTTGGGGGTCT
ACTTCGAGAATCTGAAGGAAAGCGCCCTATCCGCACTGCTCGCACCGGCG
GATGATGCATACAGAGTTCGTCTGGAGGCGTACTTCGCCAGAGGATCGTA
CTTTGAGCTGCTGCTGCCTTTGGTCAGCGGATTCAATTGCGAACCCTTCG
CTGTTATTTGCCACGGCGATTGCTGGAATAACAACATTCTCTACAAGAGT
ACAGAGCGGGGCGAGCTCGAGGACGTGCGCCTGATCGACTGGCAACTGAT
GCGATATGCCTCGCCGGTCACCGATCTAGCTTAC
BO10026.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1561-PA | 1293 | CG1561-RA | 1..918 | 17..934 | 4590 | 100 | Plus |
| CG1561-PB | 1908 | CG1561-RB | 616..1533 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1561-RB | 2160 | CG1561-RB | 631..1548 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11582628..11583545 | 934..17 | 4590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:10:16 has no hits.
BO10026.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:08 Download gff for
BO10026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-PB | 608..1533 | 9..934 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:38:06 Download gff for
BO10026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-PB | 608..1533 | 9..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:41:32 Download gff for
BO10026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 623..1548 | 9..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:18 Download gff for
BO10026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 623..1548 | 9..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:18 Download gff for
BO10026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11582628..11583549 | 9..934 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:41:32 Download gff for
BO10026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11476661..11477582 | 9..934 | 99 | | Minus |
BO10026.complete Sequence
1324 bp (1324 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631636
> BO10026.complete
GAAGTTATCAGTCGACATGGAGAGTCCTGTAGAGCAACAAGAGGACACAG
CCAAGCCAGACGAAGATCTGCCCAACGAGCAGGTTACACAGTTCCTTCGC
CAACTGGTCAGCCAGCTGTGGCCAGAGCTGGGCGCCAATCCGGAACTGCG
TCTGGAAAGGGCGAGTGCCAAGGGCGACAACTATTTGGGCGTGGTGTGGC
GCCTACAGGCGGCATCCGATTCGAAACGCAGCCTGGTGGTTAAACTGCCG
CCACAGAATCGCGTGCGCCGCAAGCAATTCTTTGCACGACCATGTTTCCT
GCGCGAGACGGCAGCATATGAGGTCTTTCTGCCGCTGACTGCGTTAATTC
AGGATAAGTGGAAGATAATCGGAGATGATCGTTTCCGGCAGCACGCGCTC
TGTTTCGGAACTCGCCAGGATGAGCCCAACGAGTGCATCGTGCTGGAGGA
TCTGTCTTGTGCCGGCTTCTCACTGCACAATCGCTTTCTCGACCTATCCG
TCGAGCATGTGCGTCGCGTAATGCTCACCTATGCCAAATTACATGCTATA
TCATTGGCCGGGAAACGGCAGTTGCCCGAGAAAATGCAACAACTGCAGCA
GCTGGTGGATATCTTTGAGCAGCGACGCGATGATCATGCCTTGGGGGTCT
ACTTCGAGAATCTGAAGGAAAGCGCCCTATCCGCACTGCTCGCACCGGCG
GATGATGCATACAGAGTTCGTCTGGAGGCGTACTTCGCCAGAGGATCGTA
CTTTGAGCTGCTGCTGCCTTTGGTCAGCGGATTCAATTGCGAACCCTTCG
CTGTTATTTGCCACGGCGATTGCTGGAATAACAACATTCTCTACAAGAGT
ACAGAGCGGGGCGAGCTCGAGGACGTGCGCCTGATCGACTGGCAACTGAT
GCGATATGCCTCGCCGGTCACCGATCTAGCTTACTTCCTCTTCACTTGCA
CTTCGCGGCGATTCCGGCAGCGACACCTCGAAAATATGCTCGAGGATTAC
TATGAAGAGTTGGGCCTGCAGCTGATTAGACTAGGCGAGCGGGTGGAGCA
ACTTTTTCCCCGTCCTGCATTCGATGAACAGGTGGCTACCAAAGCGGCTG
TGGGCCTGCTTCTCGCCATGATGGTTCTACCCATTGTAACGATGCAGGGT
CAGGATGTGCCCGACCTTCAGGCAATTAGCGAGCGCATCGAGGCGGGGGC
CACTACGGATCTCCATGGAGCTGGTTTCCTGGGCGCGGGCAACGAGGCTA
CATTTAAACAGCGTATACGCGAGGTGATCCTCGACTGTGTGGACTTTAAT
TACATAGCAAGCTTTCTAGACCAT
BO10026.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1561-RB | 1908 | CG1561-PB | 616..1905 | 17..1306 | 6450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1561-RB | 2160 | CG1561-RB | 631..1920 | 17..1306 | 6450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11582533..11583545 | 1029..17 | 5065 | 100 | Minus |
| X | 23542271 | X | 11582197..11582475 | 1306..1028 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:13:15 has no hits.
BO10026.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:46 Download gff for
BO10026.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 608..1908 | 9..1307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:35 Download gff for
BO10026.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 608..1905 | 9..1306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:04 Download gff for
BO10026.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 631..1920 | 17..1308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:46 Download gff for
BO10026.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 608..1905 | 9..1306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:42 Download gff for
BO10026.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 631..1920 | 17..1308 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:42 Download gff for
BO10026.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11582195..11582473 | 1030..1308 | 99 | <- | Minus |
| X | 11582533..11583545 | 17..1029 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:04 Download gff for
BO10026.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11476228..11476506 | 1030..1308 | 99 | <- | Minus |
| arm_X | 11476566..11477578 | 17..1029 | 100 | | Minus |
BO10026.pep Sequence
Translation from 16 to 1324
> BO10026.pep
MESPVEQQEDTAKPDEDLPNEQVTQFLRQLVSQLWPELGANPELRLERAS
AKGDNYLGVVWRLQAASDSKRSLVVKLPPQNRVRRKQFFARPCFLRETAA
YEVFLPLTALIQDKWKIIGDDRFRQHALCFGTRQDEPNECIVLEDLSCAG
FSLHNRFLDLSVEHVRRVMLTYAKLHAISLAGKRQLPEKMQQLQQLVDIF
EQRRDDHALGVYFENLKESALSALLAPADDAYRVRLEAYFARGSYFELLL
PLVSGFNCEPFAVICHGDCWNNNILYKSTERGELEDVRLIDWQLMRYASP
VTDLAYFLFTCTSRRFRQRHLENMLEDYYEELGLQLIRLGERVEQLFPRP
AFDEQVATKAAVGLLLAMMVLPIVTMQGQDVPDLQAISERIEAGATTDLH
GAGFLGAGNEATFKQRIREVILDCVDFNYIASFLDH
BO10026.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1561-PB | 635 | CG1561-PB | 206..635 | 1..430 | 2232 | 100 | Plus |
| CG13813-PA | 430 | CG13813-PA | 34..417 | 53..428 | 372 | 26.6 | Plus |
| CG14314-PA | 438 | CG14314-PA | 49..434 | 46..426 | 372 | 28.2 | Plus |
| CG5644-PA | 459 | CG5644-PA | 33..452 | 21..430 | 315 | 27.6 | Plus |
| CG2004-PG | 425 | CG2004-PG | 42..424 | 52..430 | 311 | 26.7 | Plus |
