Clone Sequence Records
BO10030.3prime Sequence
953 bp (872 high quality bases) assembled on 2006-04-19
> BO10030.3prime
ATGGTCTAGAAAGCTTGCGGTGGAGTAGTCGACTGCTCCGCTGCCGTTCT
GCTGCATGCGGACGGACCGACGACGGGTCAGGATGCGGCCCGGTGCCGCC
GGAGCACCTGGATCGCCGCCCTCAACTGGGACACCCACTTGCACTCCCGT
TTCCGGGATTATTCCCGTATTGCTGTTATTAACAGCCGCAGCGGCGGCAG
CAGCCTCTTCGCTCGCCATTCCGGCCACAGCGTTGTCCACGATCATGGGG
ACGGCCACTGGTGTTGTCACTGGCTGATGATCCTCCTCCAGCTGGGAGTT
GCGACGCGTGGTAATGCCTCGCAGCTTGGACTTTTTGGGCGGCAGAGTAC
GTGGGGCGGTAACTTCCCTGATGGGCGGCGCTTCCTGGACGTTATTTCCT
ACTGGGGTGGGAGTCGGCACCACCACTACCGTTGGAAGGGCTTCCTCCTC
TTGGTAGTTTCGTTTGCGGGCTAATCGCGCTGCATTTCCGTTCATATTGC
TGCCATCATCCGACAGTGGTATCTGTGGCACGGCCGCGATCTGTTCGTTG
TTGGTATTCCCATTGTAACAATCCGGATTCGTTGGGTTATTCGCCATGCA
AGCGTCCTCGTGAATGGTCTCTAGCTTATTTATCGTCGTGTTGGTGCCAC
CGTTGGTGGCAGCCGCTGGAGCCACAACCTCATCCTTGATGGCCTGTTTC
AACTGGGCGTTCTCCTTCTCAAGCGTTTGTATGCGATCGCGTGTGGTCTT
TAGTTCTTGCTGCAAAAACAGAATGGTGCTCTGCATGCCCTCCACATCCT
CGTCCAGCTCCTGCAGGAAGTCGTCCAACTCCGACTGCGATTTCTTGACC
TCTTCGCTGAAGCTCTTCTGCATGGGCAGTTCGGTCTCCAGCTTGGCCAG
TCTGCCCGTGGAGGTCATCTTGGCCAGCTCCTCGTTCTCCTGATAGAGCA
GTC
BO10030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6315-PA | 1611 | fl(2)d-RA | 674..1608 | 953..19 | 4575 | 99.5 | Minus |
| CG6315-PB | 1239 | fl(2)d-RB | 302..1236 | 953..19 | 4575 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fl(2)d-RD | 2485 | CG6315-RD | 1017..1951 | 953..19 | 4615 | 99.6 | Minus |
| fl(2)d-RC | 2435 | CG6315-RC | 967..1901 | 953..19 | 4615 | 99.6 | Minus |
| fl(2)d-RB | 2248 | CG6315-RB | 780..1714 | 953..19 | 4615 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13820158..13820970 | 19..831 | 4065 | 100 | Plus |
| 2R | 25286936 | 2R | 13821036..13821158 | 831..953 | 555 | 96.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:39:18 has no hits.
BO10030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:16 Download gff for
BO10030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6315-PA | 674..1611 | 15..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:38:16 Download gff for
BO10030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6315-PB | 302..1239 | 15..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:45:10 Download gff for
BO10030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fl(2)d-RB | 780..1719 | 13..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:03:44 Download gff for
BO10030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fl(2)d-RB | 780..1719 | 13..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:03:44 Download gff for
BO10030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13820153..13820969 | 13..830 | 99 | <- | Plus |
| 2R | 13821036..13821158 | 831..953 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:45:10 Download gff for
BO10030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9707658..9708474 | 13..830 | 99 | <- | Plus |
| arm_2R | 9708541..9708663 | 831..953 | 96 | | Plus |
BO10030.5prime Sequence
923 bp (796 high quality bases) assembled on 2006-04-19
> BO10030.5prime
GAAGTTATCAGTCGACATGAGTGTCGCTGCAATGACTATGGACGATCAAA
GACCCTGTATGAACAGTTACGACAAAATGCCCCCGACCAAATACGAGCAA
AACCTAAATATCCTAAACAGCAGCCAAAACAGTGGGGCCACTGGCGGCCC
CGCCTCCCCAACGCCCTCCGGCTTGGAGGACCACCATCATCATCACCATC
CGCATCCGCACCATCATCACCATCAGGAGCAGCAGCAGCAGCAGCAGCAA
CAGCAACACTTGCAGCAGCAGCAACAACAGCAGCAGCAGCAACATGCAGC
AGCTGTTGCAGAGGCTGTTGCAGCCGCCGAACAGCGACAGCGCTTGCTCG
AAGATGAGATCGAGAATCTCAAGCTGGAACAGGTCCGCATGGCTCAGCAA
TGCGCGGACGCCCAGCGACGCGAGAAGATCCTCATGCGACGGCTGGCCAA
CAAGGAGCAAGAATTCCAGGACTATGTGAGCCAAATTGCCGAGTACAAGG
CCCAACAGGCGCCAACTGCCCTCGCATTGCGCACTGCTCTGCTCGATCCT
GCGGTCAATCTCCTGTTCGAGCGGCTCAAGAAGGAACTTAAGGCCACCAA
GGCCAAGCTGGAGGAGACCCAGAACGAGCTGTCCGCATGGAAGTTCACGC
CGGACTCTAATACCGGCAAACGCCTAATGGCCAAGTGCCGACTGCTCTAT
CAGGAGAACGAGGAGCTGGGCAAGATGACCTCCAACGGCAGACTGGCCAA
GCTGGAGACCGAACTGGCCATGCAGAAGAGCTTCAGCGAAGAGGTCAAGA
AATCGCAGTCGGAGTTGGACGACTTCCTGCAGGAGCTGGACGAGGATGTG
GAGGGCATGCAGAGCACCATTCTGTTTTTGCAGCAAGACTAAAGACCACA
CGCGATCGCATACAAACGCTTGA
BO10030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6315-PA | 1611 | fl(2)d-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
| CG6315-PB | 1239 | fl(2)d-RB | 1..500 | 389..888 | 2500 | 100 | Plus |
| CG6315-PA | 1611 | fl(2)d-RA | 873..908 | 888..923 | 180 | 100 | Plus |
| CG6315-PB | 1239 | fl(2)d-RB | 501..536 | 888..923 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fl(2)d-RA | 2567 | CG6315-RA | 426..1333 | 17..923 | 4515 | 99.9 | Plus |
| fl(2)d-RD | 2485 | CG6315-RD | 680..1251 | 353..923 | 2835 | 99.8 | Plus |
| fl(2)d-RC | 2435 | CG6315-RC | 630..1201 | 353..923 | 2835 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13823792..13824128 | 353..17 | 1685 | 100 | Minus |
| 2R | 25286936 | 2R | 13821036..13821370 | 812..478 | 1675 | 100 | Minus |
| 2R | 25286936 | 2R | 13821433..13821563 | 478..348 | 640 | 99.2 | Minus |
| 2R | 25286936 | 2R | 13820858..13820970 | 923..812 | 515 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:41:25 has no hits.
BO10030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:17 Download gff for
BO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6315-PA | 1..907 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:38:17 Download gff for
BO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6315-PA | 1..907 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:54:50 Download gff for
BO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fl(2)d-RA | 426..1332 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:31:10 Download gff for
BO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fl(2)d-RA | 426..1332 | 17..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:31:10 Download gff for
BO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13821433..13821557 | 354..478 | 100 | <- | Minus |
| 2R | 13820859..13820969 | 813..922 | 99 | <- | Minus |
| 2R | 13821036..13821369 | 479..812 | 100 | <- | Minus |
| 2R | 13823792..13824128 | 17..353 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:54:50 Download gff for
BO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9708938..9709062 | 354..478 | 100 | <- | Minus |
| arm_2R | 9708364..9708474 | 813..922 | 99 | <- | Minus |
| arm_2R | 9708541..9708874 | 479..812 | 100 | <- | Minus |
| arm_2R | 9711297..9711633 | 17..353 | 100 | | Minus |
BO10030.complete Sequence
1642 bp (1642 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631637
> BO10030.complete
GAAGTTATCAGTCGACATGAGTGTCGCTGCAATGACTATGGACGATCAAA
GACCCTGTATGAACAGTTACGACAAAATGCCCCCGACCAAATACGAGCAA
AACCTAAATATCCTAAACAGCAGCCAAAACAGTGGGGCCACTGGCGGCCC
CGCCTCCCCAACGCCCTCCGGCTTGGAGGACCACCATCATCATCACCATC
CGCATCCGCACCATCATCACCATCAGGAGCAGCAGCAGCAGCAGCAGCAA
CAGCAACACTTGCAGCAGCAGCAACAACAGCAGCAGCAGCAACATGCAGC
AGCTGTTGCAGAGGCTGTTGCAGCCGCCGAACAGCGACAGCGCTTGCTCG
AAGATGAGATCGAGAATCTCAAGCTGGAACAGGTCCGCATGGCTCAGCAA
TGCGCGGACGCCCAGCGACGCGAGAAGATCCTCATGCGACGGCTGGCCAA
CAAGGAGCAAGAATTCCAGGACTATGTGAGCCAAATTGCCGAGTACAAGG
CCCAACAGGCGCCAACTGCCCTCGCATTGCGCACTGCTCTGCTCGATCCT
GCGGTCAATCTCCTGTTCGAGCGGCTCAAGAAGGAACTTAAGGCCACCAA
GGCCAAGCTGGAGGAGACCCAGAACGAGCTGTCCGCATGGAAGTTCACGC
CGGACTCTAATACCGGCAAACGCCTAATGGCCAAGTGCCGACTGCTCTAT
CAGGAGAACGAGGAGCTGGGCAAGATGACCTCCAACGGCAGACTGGCCAA
GCTGGAGACCGAACTGGCCATGCAGAAGAGCTTCAGCGAAGAGGTCAAGA
AATCGCAGTCGGAGTTGGACGACTTCCTGCAGGAGCTGGACGAGGATGTG
GAGGGCATGCAGAGCACCATTCTGTTTTTGCAGCAAGAACTAAAGACCAC
ACGCGATCGCATACAAACGCTTGAGAAGGAGAACGCCCAGTTGAAACAGG
CCATCAAGGATGAGGTTGTGGCTCCAGCGGCTGCCACCAACGGTGGCACC
AACACGACGATAAATAAGCTAGAGACCATTCACGAGGACGCTTGCATGGC
GAATAACCCAACGAATCCGGATTGTTACAATGGGAATACCAACAACGAAC
AGATCGCGGCCGTGCCACAGATACCACTGTCGGATGATGGCAGCAATATG
AACGGAAATGCAGCGCGATTAGCCCGCAAACGAAACTACCAAGAGGAGGA
AGCCCTTCCAACGGTAGTGGTGGTGCCGACTCCCACCCCAGTAGGAAATA
ACGTCCAGGAAGCGCCGCCCATCAGGGAAGTTACCGCCCCACGTACTCTG
CCGCCCAAAAAGTCCAAGCTGCGAGGCATTACCACGCGTCGCAACTCCCA
GCTGGAGGAGGATCATCAGCCAGTGACAACACCAGTGGCCGTCCCCATGA
TCGTGGACAACGCTGTGGCCGGAATGGCGAGCGAAGAGGCTGCTGCCGCC
GCTGCGGCTGTTAATAACAGCAATACGGGAATAATCCCGGAAACGGGAGT
GCAAGTGGGTGTCCCAGTTGAGGGCGGCGATCCAGGTGCTCCGGCGGCAC
CGGGCCGCATCCTGACCCGTCGTCGGTCCGTCCGCATGCAGCAGAACGGC
AGCGGAGCAGTCGACTACTCCACCGCAAGCTTTCTAGACCAT
BO10030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fl(2)d-RA | 1611 | CG6315-PA | 1..1608 | 17..1624 | 8040 | 100 | Plus |
| fl(2)d-RD | 1239 | CG6315-PD | 1..1236 | 389..1624 | 6180 | 100 | Plus |
| fl(2)d-RC | 1239 | CG6315-PC | 1..1236 | 389..1624 | 6180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fl(2)d-RA | 2567 | CG6315-RA | 426..2033 | 17..1624 | 8040 | 100 | Plus |
| fl(2)d-RD | 2485 | CG6315-RD | 680..1951 | 353..1624 | 6360 | 100 | Plus |
| fl(2)d-RC | 2435 | CG6315-RC | 630..1901 | 353..1624 | 6360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13820158..13820970 | 1624..812 | 4065 | 100 | Minus |
| 2R | 25286936 | 2R | 13823792..13824128 | 353..17 | 1685 | 100 | Minus |
| 2R | 25286936 | 2R | 13821036..13821370 | 812..478 | 1675 | 100 | Minus |
| 2R | 25286936 | 2R | 13821433..13821563 | 478..348 | 640 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:04:14 has no hits.
BO10030.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:47 Download gff for
BO10030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fl(2)d-RA | 1..1611 | 17..1628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:37 Download gff for
BO10030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fl(2)d-RA | 427..2039 | 17..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:53 Download gff for
BO10030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fl(2)d-RA | 426..2033 | 17..1626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:47 Download gff for
BO10030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fl(2)d-RA | 427..2039 | 17..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:56 Download gff for
BO10030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fl(2)d-RA | 426..2033 | 17..1626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:56 Download gff for
BO10030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13821036..13821369 | 479..812 | 100 | <- | Minus |
| 2R | 13821433..13821557 | 354..478 | 100 | <- | Minus |
| 2R | 13823792..13824128 | 17..353 | 100 | | Minus |
| 2R | 13820156..13820969 | 813..1626 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:53 Download gff for
BO10030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9708541..9708874 | 479..812 | 100 | <- | Minus |
| arm_2R | 9708938..9709062 | 354..478 | 100 | <- | Minus |
| arm_2R | 9711297..9711633 | 17..353 | 100 | | Minus |
| arm_2R | 9707661..9708474 | 813..1626 | 99 | <- | Minus |
BO10030.pep Sequence
Translation from 16 to 1642
> BO10030.pep
MSVAAMTMDDQRPCMNSYDKMPPTKYEQNLNILNSSQNSGATGGPASPTP
SGLEDHHHHHHPHPHHHHHQEQQQQQQQQQHLQQQQQQQQQQHAAAVAEA
VAAAEQRQRLLEDEIENLKLEQVRMAQQCADAQRREKILMRRLANKEQEF
QDYVSQIAEYKAQQAPTALALRTALLDPAVNLLFERLKKELKATKAKLEE
TQNELSAWKFTPDSNTGKRLMAKCRLLYQENEELGKMTSNGRLAKLETEL
AMQKSFSEEVKKSQSELDDFLQELDEDVEGMQSTILFLQQELKTTRDRIQ
TLEKENAQLKQAIKDEVVAPAAATNGGTNTTINKLETIHEDACMANNPTN
PDCYNGNTNNEQIAAVPQIPLSDDGSNMNGNAARLARKRNYQEEEALPTV
VVVPTPTPVGNNVQEAPPIREVTAPRTLPPKKSKLRGITTRRNSQLEEDH
QPVTTPVAVPMIVDNAVAGMASEEAAAAAAAVNNSNTGIIPETGVQVGVP
VEGGDPGAPAAPGRILTRRRSVRMQQNGSGAVDYSTASFLDH
BO10030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fl(2)d-PA | 536 | CG6315-PA | 1..536 | 1..536 | 2750 | 100 | Plus |
| fl(2)d-PD | 412 | CG6315-PD | 1..412 | 125..536 | 2082 | 100 | Plus |
| fl(2)d-PC | 412 | CG6315-PC | 1..412 | 125..536 | 2082 | 100 | Plus |
| fl(2)d-PB | 412 | CG6315-PB | 1..412 | 125..536 | 2082 | 100 | Plus |
| ssp6-PB | 866 | CG6619-PB | 519..565 | 46..92 | 176 | 68.1 | Plus |
