Clone Sequence Records
BO10035.3prime Sequence
940 bp (847 high quality bases) assembled on 2006-04-19
> BO10035.3prime
ATGGTCTAGTAAGCTTGCCAGCTTAGCCTTCATCAGGGGCTTCAGGTAGG
TCTCAAATGATGTTTGGACGGGCTTCTGGTTCATGGTGCTGCGTTTGGCC
GAATCGAAGAGCCTGGGATACACATTGCCATCGTAGCTGCCCAGCACGGA
GTTTAGCACACGGTCGTGGAACTCGAATCCATCGCATATGGCCACCGCAT
TGGGTCGGAACTGCGCCAGTGAATCCTCCAAGCGTTTTTGCAGCGATCGC
AGATCCGCATCGCTTAGTTTAATGAATCTTAAAATGTCATTAAGGTTATT
AAGCACCGTTTGGACCAGAAATAGTTCCAGCACGTTCTCCAATATCTTGT
TCAGTGCGGGGGATCGCTTCTGGGCCTTGGCACCAGTGATCTGCTCCAGG
AATGTTTGGCACACAAACTGCCGGCCATGCAGCTCAGCTGCACGAGTCAG
TTCGATTCCCGTGTTATTGGCCGCCACACCTTGAGACTGACCGCTGGCCA
TGCGATTCGCTAGATTCTCGAAAGCAATGCGGGTCTTGTGTGCAGCCGTG
TATTGCAAAGCCTTGATGATGCACTGCCAGGAGTCGTCCCATTTGGGGAA
CTCCTTCAGCTGCATGGAGCTGGCAAAGTAGCTGTAGGATGCCGATAATG
GTTTCTTGTCCACGAACGAAGCCCATGCCTTAACTAAAGCTCGTCCAATT
TGCAGAAGCAGCACCGTGTTCTCGCCTTCGTAGGTGTACGCAGCCACAGC
ATTGCCATAGATGTTGCTCAAGTTGGCGGCGATGAGGTAACCATGTCCTC
CAGTGGACAGACGAAGTTTTTCAATGCCAGCACAGCCGTCAGTGGTGCAA
AGGACCTTGAGCGCGCAGGACAGGATGTGCATGTCGGGCAGTCGCTCGAA
CTTGCCGTTGTTGGCTTCCTGCCCGTCTGGGCATACATTT
BO10035.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9709-PA | 2034 | Acox57D-d-RA | 1128..2031 | 922..19 | 4520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acox57D-d-RA | 2252 | CG9709-RA | 1203..2125 | 940..19 | 4590 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21391202..21391604 | 940..539 | 1965 | 99.8 | Minus |
2R | 25286936 | 2R | 21392055..21392312 | 276..19 | 1290 | 100 | Minus |
2R | 25286936 | 2R | 21391838..21391995 | 434..277 | 790 | 100 | Minus |
2R | 25286936 | 2R | 21391661..21391766 | 538..433 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:39:45 has no hits.
BO10035.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:27 Download gff for
BO10035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9709-PA | 1109..2034 | 15..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:38:31 Download gff for
BO10035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9709-PA | 1109..2034 | 15..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:45:57 Download gff for
BO10035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 1203..2135 | 9..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:26:09 Download gff for
BO10035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 1203..2135 | 9..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:26:09 Download gff for
BO10035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21391202..21391604 | 539..940 | 99 | -> | Minus |
2R | 21391661..21391766 | 433..538 | 100 | -> | Minus |
2R | 21391840..21391995 | 277..432 | 100 | -> | Minus |
2R | 21392055..21392322 | 9..276 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:45:57 Download gff for
BO10035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17278707..17279109 | 539..940 | 99 | -> | Minus |
arm_2R | 17279166..17279271 | 433..538 | 100 | -> | Minus |
arm_2R | 17279345..17279500 | 277..432 | 100 | -> | Minus |
arm_2R | 17279560..17279827 | 9..276 | 98 | | Minus |
BO10035.5prime Sequence
857 bp (757 high quality bases) assembled on 2006-04-19
> BO10035.5prime
GAAGTTATCAGTCGACATGTCGCATATTAAAAACCTAATACCGAGCACAG
TGAATCCAGATCTTCAAAAGGAACGTGCTGCAGCTGAATTCCATGTGGAG
GAATTCTCCGCCTGGTGGCACGGTGGTCAAGACAAACTGAAGAAGAAGCG
CGAAATCGAGAAAGCGATCTTCAGCGATCTTGAGGATGGCTATGGCCTCA
ACCATGAGTACATGTCCCACGAGGAGGTCTACAATTCCACGGTGAAGAAG
GTGGCTGAGGCAGCTGTTAAGCTCAAGGCTCTGCAGAACAAGCTTAATCC
TGGAGGAACTGACATCTGGCCTGGAGGACTATTCAATGCACAGAGCTTTG
GACTTTTTCCGGCTAATCATCCGATTGCCACCCACATCACCATGTTCGTG
GATGTGATCAAAGGTCAGGGCACTGCCGAACAGGTGGAGAAGTGGGGCAA
GGCGGCGGAGAACTGCAACATTATCGGCACCTACGCCCAAACGGAGCTGG
CCCATGGCACCAATGTCCGTGGCTTGGCCACTCGGGCTGACTTTGATCCC
AAAACGGATGAGTTTGTGCTAAATACACCGAACTTGGAGGCCTACAAATG
GTGGCCCGGCGGCTTGGGACACACGGCCAATCATGCAATGGTAGTAGCCC
AACTATATATCGCCGATGTTCATCATGGCGTGCAAATGTTTATTGTGCCG
TTAAGAGATTCCGAAACTCACATGCCACTGCCGGGTGTTGATATCGGTGA
GATTGGCAAGAAGCTCGGCATGGCATCCGTGAACCAGGGCTTCCTGGGAC
TGAACCACGTTCGAATTCCGCGCACCAACATGCTGATGAAGTTCGCCAAG
GTGGAGC
BO10035.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9709-PA | 2034 | Acox57D-d-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acox57D-d-RA | 2252 | CG9709-RA | 95..935 | 17..857 | 4205 | 100 | Plus |
Acox57D-p-RB | 2235 | CG9707-RB | 515..673 | 475..633 | 180 | 74.2 | Plus |
Acox57D-p-RA | 2552 | CG9707-RA | 832..990 | 475..633 | 180 | 74.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21390283..21390575 | 322..614 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 21390638..21390880 | 615..857 | 1215 | 100 | Plus |
2R | 25286936 | 2R | 21390058..21390221 | 158..321 | 820 | 100 | Plus |
2R | 25286936 | 2R | 21389499..21389640 | 17..158 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:13:33 has no hits.
BO10035.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:28 Download gff for
BO10035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9709-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:38:32 Download gff for
BO10035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9709-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:38:40 Download gff for
BO10035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 86..935 | 9..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:53:18 Download gff for
BO10035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 86..935 | 9..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:53:18 Download gff for
BO10035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21389490..21389640 | 9..158 | 97 | -> | Plus |
2R | 21390059..21390221 | 159..321 | 100 | -> | Plus |
2R | 21390283..21390575 | 322..614 | 100 | -> | Plus |
2R | 21390638..21390880 | 615..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:38:40 Download gff for
BO10035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17276995..17277145 | 9..158 | 97 | -> | Plus |
arm_2R | 17277564..17277726 | 159..321 | 100 | -> | Plus |
arm_2R | 17277788..17278080 | 322..614 | 100 | -> | Plus |
arm_2R | 17278143..17278385 | 615..857 | 100 | | Plus |
BO10035.complete Sequence
2065 bp assembled on 2008-11-10
> BO10035.complete
GAAGTTATCAGTCGACATGTCGCATATTAAAAACCTAATACCGAGCACAG
TGAATCCAGATCTTCAAAAGGAACGTGCTGCAGCTGAATTCCATGTGGAG
GAATTCTCCGCCTGGTGGCACGGTGGTCAAGACAAACTGAAGAAGAAGCG
CGAAATCGAGAAAGCGATCTTCAGCGATCTTGAGGATGGCTATGGCCTCA
ACCATGAGTACATGTCCCACGAGGAGGTCTACAATTCCACGGTGAAGAAG
GTGGCTGAGGCAGCTGTTAAGCTCAAGGCTCTGCAGAACAAGCTTAATCC
TGGAGGAACTGACATCTGGCCTGGAGGACTATTCAATGCACAGAGCTTTG
GACTTTTTCCGGCTAATCATCCGATTGCCACCCACATCACCATGTTCGTG
GATGTGATCAAAGGTCAGGGCACTGCCGAACAGGTGGAGAAGTGGGGCAA
GGCGGCGGAGAACTGCAACATTATCGGCACCTACGCCCAAACGGAGCTGG
CCCATGGCACCAATGTCCGTGGCTTGGCCACTCGGGCTGACTTTGATCCC
AAAACGGATGAGTTTGTGCTAAATACACCGAACTTGGAGGCCTACAAATG
GTGGCCCGGCGGCTTGGGACACACGGCCAATCATGCAATGGTAGTAGCCC
AACTATATATCGCCGATGTTCATCATGGCGTGCAAATGTTTATTGTGCCG
TTAAGAGATTCCGAAACTCACATGCCACTGCCGGGTGTTGATATCGGTGA
GATTGGCAAGAAGCTCGGCATGGCATCCGTGAACCAGGGCTTCCTGGGAC
TGAACCACGTTCGAATTCCGCGCACCAACATGCTGATGAAGTTCGCCAAG
GTGGAGCGGGATGGCACCTTCAAGGCCAGCCCGGCATCGAGGATTAACTA
CCTGACCATGGTGTACACGCGCTGCTTGATCGTTAGCCAGAACTCCACGT
TGCTCCTGGCGGCGGCAACCATAGCCACGAGATACTCGGCAGTGCGGCGT
CAGAGTCCCATTGAGCCCAATCAACCCGAGCCCCAGATCATAGATCATGT
GACCCAGCGCCTGAAGCTCTTCCCTGAGATCGCTACGGGAATCGCCTACC
ATCTGGCCACCGAGTACATGTGGGAAATGTATGCCCAGACGGTGCAGGAA
GCCAACAACGGCAAGTTCGAGCGACTGCCCGACATGCACATCCTGTCCTG
CGCGCTCAAGGTCCTTTGCACCACTGACGGCTGTGCTGGCATTGAAAAAC
TTCGTCTGTCCACTGGAGGACATGGTTACCTCATCGCCGCCAACTTGAGC
AACATCTATGGCAATGCTGTGGCTGCGTACACCTACGAAGGCGAGAACAC
GGTGCTGCTTCTGCAAATTGGACGAGCTTTAGTTAAGGCATGGGCTTCGT
TCGTGGACAAGAAACCATTATCGGCATCCTACAGCTACTTTGCCAGCTCC
ATGCAGCTGAAGGAGTTCCCCAAATGGGACGACTCCTGGCAGTGCATCAT
CAAGGCTTTGCAATACACGGCTGCACACAAGACCCGCATTGCTTTCGAGA
ATCTAGCGAATCGCATGGCCAGCGGTCAGTCTCAAGGTGTGGCGGCCAAT
AACACGGGAATCGAACTGACTCGTGCAGCTGAGCTGCATGGCCGGCAGTT
TGTGTGCCAAACATTCCTGGAGCAGATCACTGGTGCCAAGGCCCAGAAGC
GATCCCCCGCACTGAACAAGATATTGGAGAACGTGCTGGAACTATTTCTG
GTCCAAACGGTGCTTAATAACCTTAATGACATTTTAAGATTCATTAAACT
AAGCGATGCGGATCTGCGATCGCTGCAAAAACGCTTGGAGGATTCACTGG
CGCAGTTCCGACCCAATGCGGTGGCCATATGCGATGGATTCGAGTTCCAC
GACCGTGTGCTAAACTCCGTGCTGGGCAGCTACGATGGCAATGTGTATCC
CAGGCTCTTCGATTCGGCCAAACGCAGCACCATGAACCAGAAGCCCGTCC
AAACATCATTTGAGACCTACCTGAAGCCCCTGATGAAGGCTAAGCTGGCA
AGCTTACTAGACCAT
BO10035.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acox57D-d-RA | 2034 | CG9709-PA | 1..2031 | 17..2047 | 10155 | 100 | Plus |
Acox57D-p-RB | 2034 | CG9707-PB | 952..1064 | 968..1080 | 220 | 79.6 | Plus |
Acox57D-p-RA | 2034 | CG9707-PA | 952..1064 | 968..1080 | 220 | 79.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acox57D-d-RA | 2252 | CG9709-RA | 95..2125 | 17..2047 | 10155 | 100 | Plus |
Acox57D-p-RB | 2235 | CG9707-RB | 1008..1120 | 968..1080 | 220 | 79.6 | Plus |
Acox57D-p-RA | 2552 | CG9707-RA | 1325..1437 | 968..1080 | 220 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21391098..21391604 | 1021..1527 | 2535 | 100 | Plus |
2R | 25286936 | 2R | 21390638..21391043 | 615..1020 | 2030 | 100 | Plus |
2R | 25286936 | 2R | 21390283..21390575 | 322..614 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 21392055..21392312 | 1790..2047 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 21390058..21390221 | 158..321 | 820 | 100 | Plus |
2R | 25286936 | 2R | 21391838..21391995 | 1632..1789 | 790 | 100 | Plus |
2R | 25286936 | 2R | 21389499..21389640 | 17..158 | 710 | 100 | Plus |
2R | 25286936 | 2R | 21391661..21391766 | 1528..1633 | 530 | 100 | Plus |
2R | 25286936 | 2R | 17763111..17763222 | 974..1085 | 185 | 77.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:03:13 has no hits.
BO10035.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:01 Download gff for
BO10035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 101..2150 | 9..2057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:51 Download gff for
BO10035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 95..2125 | 17..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:58 Download gff for
BO10035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 110..2140 | 17..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:23 Download gff for
BO10035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 95..2125 | 17..2049 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:23 Download gff for
BO10035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21389499..21389640 | 17..158 | 100 | -> | Plus |
2R | 21390059..21390221 | 159..321 | 100 | -> | Plus |
2R | 21390283..21390575 | 322..614 | 100 | -> | Plus |
2R | 21390638..21391043 | 615..1020 | 100 | -> | Plus |
2R | 21391098..21391604 | 1021..1527 | 100 | -> | Plus |
2R | 21391661..21391766 | 1528..1633 | 100 | -> | Plus |
2R | 21391840..21391995 | 1634..1789 | 100 | -> | Plus |
2R | 21392055..21392312 | 1790..2049 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:51 Download gff for
BO10035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17277004..17277145 | 17..158 | 100 | -> | Plus |
arm_2R | 17277564..17277726 | 159..321 | 100 | -> | Plus |
arm_2R | 17277788..17278080 | 322..614 | 100 | -> | Plus |
arm_2R | 17278143..17278548 | 615..1020 | 100 | -> | Plus |
arm_2R | 17278603..17279109 | 1021..1527 | 100 | -> | Plus |
arm_2R | 17279166..17279271 | 1528..1633 | 100 | -> | Plus |
arm_2R | 17279345..17279500 | 1634..1789 | 100 | -> | Plus |
arm_2R | 17279560..17279817 | 1790..2049 | 99 | | Plus |
BO10035.pep Sequence
Translation from 16 to 2065
> BO10035.pep
MSHIKNLIPSTVNPDLQKERAAAEFHVEEFSAWWHGGQDKLKKKREIEKA
IFSDLEDGYGLNHEYMSHEEVYNSTVKKVAEAAVKLKALQNKLNPGGTDI
WPGGLFNAQSFGLFPANHPIATHITMFVDVIKGQGTAEQVEKWGKAAENC
NIIGTYAQTELAHGTNVRGLATRADFDPKTDEFVLNTPNLEAYKWWPGGL
GHTANHAMVVAQLYIADVHHGVQMFIVPLRDSETHMPLPGVDIGEIGKKL
GMASVNQGFLGLNHVRIPRTNMLMKFAKVERDGTFKASPASRINYLTMVY
TRCLIVSQNSTLLLAAATIATRYSAVRRQSPIEPNQPEPQIIDHVTQRLK
LFPEIATGIAYHLATEYMWEMYAQTVQEANNGKFERLPDMHILSCALKVL
CTTDGCAGIEKLRLSTGGHGYLIAANLSNIYGNAVAAYTYEGENTVLLLQ
IGRALVKAWASFVDKKPLSASYSYFASSMQLKEFPKWDDSWQCIIKALQY
TAAHKTRIAFENLANRMASGQSQGVAANNTGIELTRAAELHGRQFVCQTF
LEQITGAKAQKRSPALNKILENVLELFLVQTVLNNLNDILRFIKLSDADL
RSLQKRLEDSLAQFRPNAVAICDGFEFHDRVLNSVLGSYDGNVYPRLFDS
AKRSTMNQKPVQTSFETYLKPLMKAKLASLLDH
BO10035.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acox57D-d-PA | 677 | CG9709-PA | 1..677 | 1..677 | 3526 | 100 | Plus |
Acox57D-p-PB | 677 | CG9707-PB | 1..677 | 1..677 | 1910 | 53.4 | Plus |
Acox57D-p-PA | 677 | CG9707-PA | 1..677 | 1..677 | 1910 | 53.4 | Plus |
CG5009-PA | 669 | CG5009-PA | 6..669 | 12..677 | 1683 | 49.7 | Plus |
CG4586-PA | 677 | CG4586-PA | 2..677 | 11..677 | 1379 | 43 | Plus |