Clone BO10035 Report

Search the DGRC for BO10035

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:100
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptAcox57D-d-RA
Protein status:BO10035.pep: Imported from assembly
Sequenced Size:2065

Clone Sequence Records

BO10035.3prime Sequence

940 bp (847 high quality bases) assembled on 2006-04-19

> BO10035.3prime
ATGGTCTAGTAAGCTTGCCAGCTTAGCCTTCATCAGGGGCTTCAGGTAGG
TCTCAAATGATGTTTGGACGGGCTTCTGGTTCATGGTGCTGCGTTTGGCC
GAATCGAAGAGCCTGGGATACACATTGCCATCGTAGCTGCCCAGCACGGA
GTTTAGCACACGGTCGTGGAACTCGAATCCATCGCATATGGCCACCGCAT
TGGGTCGGAACTGCGCCAGTGAATCCTCCAAGCGTTTTTGCAGCGATCGC
AGATCCGCATCGCTTAGTTTAATGAATCTTAAAATGTCATTAAGGTTATT
AAGCACCGTTTGGACCAGAAATAGTTCCAGCACGTTCTCCAATATCTTGT
TCAGTGCGGGGGATCGCTTCTGGGCCTTGGCACCAGTGATCTGCTCCAGG
AATGTTTGGCACACAAACTGCCGGCCATGCAGCTCAGCTGCACGAGTCAG
TTCGATTCCCGTGTTATTGGCCGCCACACCTTGAGACTGACCGCTGGCCA
TGCGATTCGCTAGATTCTCGAAAGCAATGCGGGTCTTGTGTGCAGCCGTG
TATTGCAAAGCCTTGATGATGCACTGCCAGGAGTCGTCCCATTTGGGGAA
CTCCTTCAGCTGCATGGAGCTGGCAAAGTAGCTGTAGGATGCCGATAATG
GTTTCTTGTCCACGAACGAAGCCCATGCCTTAACTAAAGCTCGTCCAATT
TGCAGAAGCAGCACCGTGTTCTCGCCTTCGTAGGTGTACGCAGCCACAGC
ATTGCCATAGATGTTGCTCAAGTTGGCGGCGATGAGGTAACCATGTCCTC
CAGTGGACAGACGAAGTTTTTCAATGCCAGCACAGCCGTCAGTGGTGCAA
AGGACCTTGAGCGCGCAGGACAGGATGTGCATGTCGGGCAGTCGCTCGAA
CTTGCCGTTGTTGGCTTCCTGCCCGTCTGGGCATACATTT

BO10035.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9709-PA 2034 Acox57D-d-RA 1128..2031 922..19 4520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
Acox57D-d-RA 2252 CG9709-RA 1203..2125 940..19 4590 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21391202..21391604 940..539 1965 99.8 Minus
2R 25286936 2R 21392055..21392312 276..19 1290 100 Minus
2R 25286936 2R 21391838..21391995 434..277 790 100 Minus
2R 25286936 2R 21391661..21391766 538..433 530 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:39:45 has no hits.

BO10035.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:27 Download gff for BO10035.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9709-PA 1109..2034 15..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:38:31 Download gff for BO10035.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9709-PA 1109..2034 15..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:45:57 Download gff for BO10035.3prime
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 1203..2135 9..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:26:09 Download gff for BO10035.3prime
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 1203..2135 9..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:26:09 Download gff for BO10035.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21391202..21391604 539..940 99 -> Minus
2R 21391661..21391766 433..538 100 -> Minus
2R 21391840..21391995 277..432 100 -> Minus
2R 21392055..21392322 9..276 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:45:57 Download gff for BO10035.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17278707..17279109 539..940 99 -> Minus
arm_2R 17279166..17279271 433..538 100 -> Minus
arm_2R 17279345..17279500 277..432 100 -> Minus
arm_2R 17279560..17279827 9..276 98   Minus

BO10035.5prime Sequence

857 bp (757 high quality bases) assembled on 2006-04-19

> BO10035.5prime
GAAGTTATCAGTCGACATGTCGCATATTAAAAACCTAATACCGAGCACAG
TGAATCCAGATCTTCAAAAGGAACGTGCTGCAGCTGAATTCCATGTGGAG
GAATTCTCCGCCTGGTGGCACGGTGGTCAAGACAAACTGAAGAAGAAGCG
CGAAATCGAGAAAGCGATCTTCAGCGATCTTGAGGATGGCTATGGCCTCA
ACCATGAGTACATGTCCCACGAGGAGGTCTACAATTCCACGGTGAAGAAG
GTGGCTGAGGCAGCTGTTAAGCTCAAGGCTCTGCAGAACAAGCTTAATCC
TGGAGGAACTGACATCTGGCCTGGAGGACTATTCAATGCACAGAGCTTTG
GACTTTTTCCGGCTAATCATCCGATTGCCACCCACATCACCATGTTCGTG
GATGTGATCAAAGGTCAGGGCACTGCCGAACAGGTGGAGAAGTGGGGCAA
GGCGGCGGAGAACTGCAACATTATCGGCACCTACGCCCAAACGGAGCTGG
CCCATGGCACCAATGTCCGTGGCTTGGCCACTCGGGCTGACTTTGATCCC
AAAACGGATGAGTTTGTGCTAAATACACCGAACTTGGAGGCCTACAAATG
GTGGCCCGGCGGCTTGGGACACACGGCCAATCATGCAATGGTAGTAGCCC
AACTATATATCGCCGATGTTCATCATGGCGTGCAAATGTTTATTGTGCCG
TTAAGAGATTCCGAAACTCACATGCCACTGCCGGGTGTTGATATCGGTGA
GATTGGCAAGAAGCTCGGCATGGCATCCGTGAACCAGGGCTTCCTGGGAC
TGAACCACGTTCGAATTCCGCGCACCAACATGCTGATGAAGTTCGCCAAG
GTGGAGC

BO10035.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9709-PA 2034 Acox57D-d-RA 1..841 17..857 4205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
Acox57D-d-RA 2252 CG9709-RA 95..935 17..857 4205 100 Plus
Acox57D-p-RB 2235 CG9707-RB 515..673 475..633 180 74.2 Plus
Acox57D-p-RA 2552 CG9707-RA 832..990 475..633 180 74.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21390283..21390575 322..614 1465 100 Plus
2R 25286936 2R 21390638..21390880 615..857 1215 100 Plus
2R 25286936 2R 21390058..21390221 158..321 820 100 Plus
2R 25286936 2R 21389499..21389640 17..158 710 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:13:33 has no hits.

BO10035.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:28:28 Download gff for BO10035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9709-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:38:32 Download gff for BO10035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9709-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:38:40 Download gff for BO10035.5prime
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 86..935 9..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:53:18 Download gff for BO10035.5prime
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 86..935 9..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:53:18 Download gff for BO10035.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21389490..21389640 9..158 97 -> Plus
2R 21390059..21390221 159..321 100 -> Plus
2R 21390283..21390575 322..614 100 -> Plus
2R 21390638..21390880 615..857 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:38:40 Download gff for BO10035.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17276995..17277145 9..158 97 -> Plus
arm_2R 17277564..17277726 159..321 100 -> Plus
arm_2R 17277788..17278080 322..614 100 -> Plus
arm_2R 17278143..17278385 615..857 100   Plus

BO10035.complete Sequence

2065 bp assembled on 2008-11-10

> BO10035.complete
GAAGTTATCAGTCGACATGTCGCATATTAAAAACCTAATACCGAGCACAG
TGAATCCAGATCTTCAAAAGGAACGTGCTGCAGCTGAATTCCATGTGGAG
GAATTCTCCGCCTGGTGGCACGGTGGTCAAGACAAACTGAAGAAGAAGCG
CGAAATCGAGAAAGCGATCTTCAGCGATCTTGAGGATGGCTATGGCCTCA
ACCATGAGTACATGTCCCACGAGGAGGTCTACAATTCCACGGTGAAGAAG
GTGGCTGAGGCAGCTGTTAAGCTCAAGGCTCTGCAGAACAAGCTTAATCC
TGGAGGAACTGACATCTGGCCTGGAGGACTATTCAATGCACAGAGCTTTG
GACTTTTTCCGGCTAATCATCCGATTGCCACCCACATCACCATGTTCGTG
GATGTGATCAAAGGTCAGGGCACTGCCGAACAGGTGGAGAAGTGGGGCAA
GGCGGCGGAGAACTGCAACATTATCGGCACCTACGCCCAAACGGAGCTGG
CCCATGGCACCAATGTCCGTGGCTTGGCCACTCGGGCTGACTTTGATCCC
AAAACGGATGAGTTTGTGCTAAATACACCGAACTTGGAGGCCTACAAATG
GTGGCCCGGCGGCTTGGGACACACGGCCAATCATGCAATGGTAGTAGCCC
AACTATATATCGCCGATGTTCATCATGGCGTGCAAATGTTTATTGTGCCG
TTAAGAGATTCCGAAACTCACATGCCACTGCCGGGTGTTGATATCGGTGA
GATTGGCAAGAAGCTCGGCATGGCATCCGTGAACCAGGGCTTCCTGGGAC
TGAACCACGTTCGAATTCCGCGCACCAACATGCTGATGAAGTTCGCCAAG
GTGGAGCGGGATGGCACCTTCAAGGCCAGCCCGGCATCGAGGATTAACTA
CCTGACCATGGTGTACACGCGCTGCTTGATCGTTAGCCAGAACTCCACGT
TGCTCCTGGCGGCGGCAACCATAGCCACGAGATACTCGGCAGTGCGGCGT
CAGAGTCCCATTGAGCCCAATCAACCCGAGCCCCAGATCATAGATCATGT
GACCCAGCGCCTGAAGCTCTTCCCTGAGATCGCTACGGGAATCGCCTACC
ATCTGGCCACCGAGTACATGTGGGAAATGTATGCCCAGACGGTGCAGGAA
GCCAACAACGGCAAGTTCGAGCGACTGCCCGACATGCACATCCTGTCCTG
CGCGCTCAAGGTCCTTTGCACCACTGACGGCTGTGCTGGCATTGAAAAAC
TTCGTCTGTCCACTGGAGGACATGGTTACCTCATCGCCGCCAACTTGAGC
AACATCTATGGCAATGCTGTGGCTGCGTACACCTACGAAGGCGAGAACAC
GGTGCTGCTTCTGCAAATTGGACGAGCTTTAGTTAAGGCATGGGCTTCGT
TCGTGGACAAGAAACCATTATCGGCATCCTACAGCTACTTTGCCAGCTCC
ATGCAGCTGAAGGAGTTCCCCAAATGGGACGACTCCTGGCAGTGCATCAT
CAAGGCTTTGCAATACACGGCTGCACACAAGACCCGCATTGCTTTCGAGA
ATCTAGCGAATCGCATGGCCAGCGGTCAGTCTCAAGGTGTGGCGGCCAAT
AACACGGGAATCGAACTGACTCGTGCAGCTGAGCTGCATGGCCGGCAGTT
TGTGTGCCAAACATTCCTGGAGCAGATCACTGGTGCCAAGGCCCAGAAGC
GATCCCCCGCACTGAACAAGATATTGGAGAACGTGCTGGAACTATTTCTG
GTCCAAACGGTGCTTAATAACCTTAATGACATTTTAAGATTCATTAAACT
AAGCGATGCGGATCTGCGATCGCTGCAAAAACGCTTGGAGGATTCACTGG
CGCAGTTCCGACCCAATGCGGTGGCCATATGCGATGGATTCGAGTTCCAC
GACCGTGTGCTAAACTCCGTGCTGGGCAGCTACGATGGCAATGTGTATCC
CAGGCTCTTCGATTCGGCCAAACGCAGCACCATGAACCAGAAGCCCGTCC
AAACATCATTTGAGACCTACCTGAAGCCCCTGATGAAGGCTAAGCTGGCA
AGCTTACTAGACCAT

BO10035.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Acox57D-d-RA 2034 CG9709-PA 1..2031 17..2047 10155 100 Plus
Acox57D-p-RB 2034 CG9707-PB 952..1064 968..1080 220 79.6 Plus
Acox57D-p-RA 2034 CG9707-PA 952..1064 968..1080 220 79.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Acox57D-d-RA 2252 CG9709-RA 95..2125 17..2047 10155 100 Plus
Acox57D-p-RB 2235 CG9707-RB 1008..1120 968..1080 220 79.6 Plus
Acox57D-p-RA 2552 CG9707-RA 1325..1437 968..1080 220 79.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21391098..21391604 1021..1527 2535 100 Plus
2R 25286936 2R 21390638..21391043 615..1020 2030 100 Plus
2R 25286936 2R 21390283..21390575 322..614 1465 100 Plus
2R 25286936 2R 21392055..21392312 1790..2047 1290 100 Plus
2R 25286936 2R 21390058..21390221 158..321 820 100 Plus
2R 25286936 2R 21391838..21391995 1632..1789 790 100 Plus
2R 25286936 2R 21389499..21389640 17..158 710 100 Plus
2R 25286936 2R 21391661..21391766 1528..1633 530 100 Plus
2R 25286936 2R 17763111..17763222 974..1085 185 77.7 Plus
Blast to na_te.dros performed on 2014-11-28 00:03:13 has no hits.

BO10035.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:01 Download gff for BO10035.complete
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 101..2150 9..2057 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:51 Download gff for BO10035.complete
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 95..2125 17..2049 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:58 Download gff for BO10035.complete
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 110..2140 17..2049 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:23 Download gff for BO10035.complete
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 95..2125 17..2049 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:23 Download gff for BO10035.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21389499..21389640 17..158 100 -> Plus
2R 21390059..21390221 159..321 100 -> Plus
2R 21390283..21390575 322..614 100 -> Plus
2R 21390638..21391043 615..1020 100 -> Plus
2R 21391098..21391604 1021..1527 100 -> Plus
2R 21391661..21391766 1528..1633 100 -> Plus
2R 21391840..21391995 1634..1789 100 -> Plus
2R 21392055..21392312 1790..2049 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:51 Download gff for BO10035.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17277004..17277145 17..158 100 -> Plus
arm_2R 17277564..17277726 159..321 100 -> Plus
arm_2R 17277788..17278080 322..614 100 -> Plus
arm_2R 17278143..17278548 615..1020 100 -> Plus
arm_2R 17278603..17279109 1021..1527 100 -> Plus
arm_2R 17279166..17279271 1528..1633 100 -> Plus
arm_2R 17279345..17279500 1634..1789 100 -> Plus
arm_2R 17279560..17279817 1790..2049 99   Plus

BO10035.pep Sequence

Translation from 16 to 2065

> BO10035.pep
MSHIKNLIPSTVNPDLQKERAAAEFHVEEFSAWWHGGQDKLKKKREIEKA
IFSDLEDGYGLNHEYMSHEEVYNSTVKKVAEAAVKLKALQNKLNPGGTDI
WPGGLFNAQSFGLFPANHPIATHITMFVDVIKGQGTAEQVEKWGKAAENC
NIIGTYAQTELAHGTNVRGLATRADFDPKTDEFVLNTPNLEAYKWWPGGL
GHTANHAMVVAQLYIADVHHGVQMFIVPLRDSETHMPLPGVDIGEIGKKL
GMASVNQGFLGLNHVRIPRTNMLMKFAKVERDGTFKASPASRINYLTMVY
TRCLIVSQNSTLLLAAATIATRYSAVRRQSPIEPNQPEPQIIDHVTQRLK
LFPEIATGIAYHLATEYMWEMYAQTVQEANNGKFERLPDMHILSCALKVL
CTTDGCAGIEKLRLSTGGHGYLIAANLSNIYGNAVAAYTYEGENTVLLLQ
IGRALVKAWASFVDKKPLSASYSYFASSMQLKEFPKWDDSWQCIIKALQY
TAAHKTRIAFENLANRMASGQSQGVAANNTGIELTRAAELHGRQFVCQTF
LEQITGAKAQKRSPALNKILENVLELFLVQTVLNNLNDILRFIKLSDADL
RSLQKRLEDSLAQFRPNAVAICDGFEFHDRVLNSVLGSYDGNVYPRLFDS
AKRSTMNQKPVQTSFETYLKPLMKAKLASLLDH

BO10035.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
Acox57D-d-PA 677 CG9709-PA 1..677 1..677 3526 100 Plus
Acox57D-p-PB 677 CG9707-PB 1..677 1..677 1910 53.4 Plus
Acox57D-p-PA 677 CG9707-PA 1..677 1..677 1910 53.4 Plus
CG5009-PA 669 CG5009-PA 6..669 12..677 1683 49.7 Plus
CG4586-PA 677 CG4586-PA 2..677 11..677 1379 43 Plus