Clone Sequence Records
BO10065.3prime Sequence
884 bp (825 high quality bases) assembled on 2006-04-19
> BO10065.3prime
ATGGTCTAGAAAGCTTGCGCGCACGGGCCAGAATCTCTGGGCCAGGAGAG
GAATGGTGACGCCGGTGACGATGCTGGAAATCAGGTTGACACTATGGTTG
TCCAGGATGCGCAGTCCGCTTACGTGGCGCACTCCCTTTCCAGGTGTATC
CACAATCTTGCCTTCCTCATTGATGCCCGAGAACTGCAGCAGACCACCTA
GGACAGAGTCCAAAAGGGACCCAAAAAGTCCAGCGATGCCACCGAAGGCG
ATGATTGGCCATTGTGGTGGGCTAATCAGAAGCATTTTGGCCTCAACCGT
GTAACGAACGGTGACGAAATAGCCAAAGCCGACGAGCAGACCGCCGAGCA
GACTCACCGCGACGCCGAGCAACGAAACCCCACCATTGGTACCGCGCGGC
ACTCTGCGCCAGGTGATGATAGAAACTGGATCGCGTTGCGACAGCACGGA
TCCTAGTTCACTGGACCAGGTGTCGCCATTGCAACAGGCAAACGCACTCA
TAACGGCCACACCCAGCCAGCTGGATCGGTATTCTCGTGCGAAGTCCACC
GCCCGCTCGCCACTACCGCAGTCCAGCAGATAAAGCAATGCAAGCTGGGC
GGCCATGCCTCCGTTGCAGAGTACCTGTATCCAGTTTCGTTGGCCTTCGC
CCTCGCGAAAATCGCTCTCGAAACGGCGTTTCATGTGCGCGCGGAACTTG
GTGGCCCGCGATGAGCTGAAGAAGAACACCACCAAGCTGGCGAAGAACGG
ATGGCTGGCGATGGAGAGAATGAAGGCCACCAGAATGCCCAGCGCAGCTC
CAGATCGGTTGACGCTCCTCCGGCGCAGAGCCACAGTCATCAGGGGCAAG
GGCGCCAGTGTGGAGAAGAGCCAGCGCACCGGCG
BO10065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10171-PA | 993 | CG10171-RA | 125..990 | 884..19 | 4305 | 99.8 | Minus |
CG10171-PB | 1005 | CG10171-RB | 137..1002 | 884..19 | 4305 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10171-RB | 1845 | CG10171-RB | 270..1135 | 884..19 | 4315 | 99.9 | Minus |
CG10171-RA | 1611 | CG10171-RA | 184..1049 | 884..19 | 4315 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13386718..13387583 | 19..884 | 4315 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:59:52 has no hits.
BO10065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:12 Download gff for
BO10065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10171-PA | 125..993 | 15..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:39:29 Download gff for
BO10065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10171-PB | 137..1005 | 15..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:39:18 Download gff for
BO10065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10171-RA | 184..1056 | 12..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:26 Download gff for
BO10065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10171-RA | 184..1056 | 12..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:26 Download gff for
BO10065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13386711..13387583 | 12..884 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:39:18 Download gff for
BO10065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13379811..13380683 | 12..884 | 99 | | Plus |
BO10065.5prime Sequence
918 bp (851 high quality bases) assembled on 2006-04-19
> BO10065.5prime
GAAGTTATCAGTCGTCATGCGTGACTGGATGCCAGTGCTCTTCTGCGGAC
TGTCCGTGCCGATCTCGCTGTTCATGTGGCTGGGCAATGTGGCGCTGTCC
AAGTTCTGGAGCAGTGACTTTGAGGAGTCCCGGGTGATTCCGCCGGTGCG
CTGGCTCTTCTCCACACTGGCGCCCTTGGCCCTGATGACTGTGGCTCTGC
GCCGGAGGAGCGTCAACCGATCTGGAGCTGCGCTGGGCATTCTGGTGGCC
TTCATTCTCTCCATCGCCAGCCATCCGTTCTTCGCCAGCTTGGTGGTGTT
CTTCTTCAGCTCATCGCGGGCCACCAAGTTCCGCGCGCACATGAAACGCC
GTTTCGAGAGCGATTTTCGCGAGGGCGAAGGCCAACGAAACTGGATACAG
GTACTCTGCAACGGAGGCATGGCCGCCCAGCTTGCATTGCTTTATCTGCT
GGACTGCGGTAGTGGCGAGCGGGCGGTGGACTTCGCACGAGAATACCGAT
CCAGCTGGCTGGGTGTGGCCGTTATGAGTGCGTTTGCCTGTTGCAATGGC
GACACCTGGTCCAGTGAACTAGGATCCGTGCTGTCGCAACGCGATCCAGT
TTCTATCATCACCTGGCGCAGAGTGCCGCGCGGTACCAATGGTGGGGTTT
CGTTGCTCGGCGTCGCGGTGAGTCTGCTCGGCGGTCTGCTCGTCGGCTTT
GGCTATTTCGTCACCGTTCGTTACACGGTTGAGGCCAAAATGCTTCTGAT
TAGCCCACCACAATGGCCAATCATCGCCTTCGGTGGCATCGCTGGACTTT
TTGGGTCCCTTTTGGACTCTGTCCTANGTGGTCTGCTGCAGTTCTCGGGC
ATCAATGAGGAAAGGCAGATTGTGGATACACCCTGGAAGGGAGTGCGCCA
CGTAAGCGGACTGCGCAT
BO10065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10171-PA | 993 | CG10171-RA | 1..846 | 17..862 | 4211 | 99.8 | Plus |
CG10171-PB | 1005 | CG10171-RB | 121..858 | 125..862 | 3671 | 99.8 | Plus |
CG10171-PB | 1005 | CG10171-RB | 1..109 | 17..125 | 545 | 100 | Plus |
CG10171-PB | 1005 | CG10171-RB | 883..914 | 887..918 | 160 | 100 | Plus |
CG10171-PA | 993 | CG10171-RA | 871..902 | 887..918 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:11:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10171-RA | 1611 | CG10171-RA | 60..961 | 17..918 | 4409 | 99.4 | Plus |
CG10171-RB | 1845 | CG10171-RB | 134..1047 | 17..918 | 4279 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13386806..13387599 | 918..125 | 3869 | 99.1 | Minus |
3L | 28110227 | 3L | 13387666..13387774 | 125..17 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:11:11 has no hits.
BO10065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:13 Download gff for
BO10065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10171-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:39:30 Download gff for
BO10065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10171-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:50:39 Download gff for
BO10065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10171-RA | 54..961 | 11..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:22:06 Download gff for
BO10065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10171-RA | 54..961 | 11..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:22:06 Download gff for
BO10065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13387666..13387780 | 11..125 | 97 | | Minus |
3L | 13386806..13387598 | 126..918 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:50:39 Download gff for
BO10065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13379906..13380698 | 126..918 | 99 | <- | Minus |
arm_3L | 13380766..13380880 | 11..125 | 97 | | Minus |
BO10065.complete Sequence
1024 bp assembled on 2008-08-15
GenBank Submission: FJ631639
> BO10065.complete
GAAGTTATCAGTCGTCATGCGTGACTGGATGCCAGTGCTCTTCTGCGGAC
TGTCCGTGCCGATCTCGCTGTTCATGTGGCTGGGCAATGTGGCGCTGTCC
AAGTTCTGGAGCAGTGACTTTGAGGAGTCCCGGGTGATTCCGCCGGTGCG
CTGGCTCTTCTCCACACTGGCGCCCTTGGCCCTGATGACTGTGGCTCTGC
GCCGGAGGAGCGTCAACCGATCTGGAGCTGCGCTGGGCATTCTGGTGGCC
TTCATTCTCTCCATCGCCAGCCATCCGTTCTTCGCCAGCTTGGTGGTGTT
CTTCTTCAGCTCATCGCGGGCCACCAAGTTCCGCGCGCACATGAAACGCC
GTTTCGAGAGCGATTTTCGCGAGGGCGAAGGCCAACGAAACTGGATACAG
GTACTCTGCAACGGAGGCATGGCCGCCCAGCTTGCATTGCTTTATCTGCT
GGACTGCGGTAGTGGCGAGCGGGCGGTGGACTTCGCACGAGAATACCGAT
CCAGCTGGCTGGGTGTGGCCGTTATGAGTGCGTTTGCCTGTTGCAATGGC
GACACCTGGTCCAGTGAACTAGGATCCGTGCTGTCGCAACGCGATCCAGT
TTCTATCATCACCTGGCGCAGAGTGCCGCGCGGTACCAATGGTGGGGTTT
CGTTGCTCGGCGTCGCGGTGAGTCTGCTCGGCGGTCTGCTCGTCGGCTTT
GGCTATTTCGTCACCGTTCGTTACACGGTTGAGGCCAAAATGCTTCTGAT
TAGCCCACCACAATGGCCAATCATCGCCTTCGGTGGCATCGCTGGACTTT
TTGGGTCCCTTTTGGACTCTGTCCTAGGTGGTCTGCTGCAGTTCTCGGGC
ATCAATGAGGAAGGCAAGATTGTGGATACACCTGGAAAGGGAGTGCGCCA
CGTAAGCGGACTGCGCATCCTGGACAACCATAGTGTCAACCTGATTTCCA
GCATCGTCACCGGCGTCACCATTCCTCTCCTGGCCCAGAGATTCTGGCCC
GTGCGCGCAAGCTTTCTAGACCAT
BO10065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10171-RA | 993 | CG10171-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
CG10171-RB | 1005 | CG10171-PB | 1..1002 | 17..1006 | 4795 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10171-RA | 1611 | CG10171-RA | 60..1049 | 17..1006 | 4950 | 100 | Plus |
CG10171-RB | 1845 | CG10171-RB | 134..1135 | 17..1006 | 4795 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13386718..13387599 | 1006..125 | 4410 | 100 | Minus |
3L | 28110227 | 3L | 13387666..13387774 | 125..17 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:19:09 has no hits.
BO10065.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:07 Download gff for
BO10065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10171-RA | 90..1092 | 11..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:24 Download gff for
BO10065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10171-RA | 60..1049 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:13 Download gff for
BO10065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10171-RA | 96..1085 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:44 Download gff for
BO10065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10171-RA | 60..1049 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:44 Download gff for
BO10065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13386716..13387598 | 126..1008 | 99 | <- | Minus |
3L | 13387666..13387774 | 17..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:24 Download gff for
BO10065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13379816..13380698 | 126..1008 | 99 | <- | Minus |
arm_3L | 13380766..13380874 | 17..125 | 100 | | Minus |
BO10065.pep Sequence
Translation from 16 to 1024
> BO10065.pep
MRDWMPVLFCGLSVPISLFMWLGNVALSKFWSSDFEESRVIPPVRWLFST
LAPLALMTVALRRRSVNRSGAALGILVAFILSIASHPFFASLVVFFFSSS
RATKFRAHMKRRFESDFREGEGQRNWIQVLCNGGMAAQLALLYLLDCGSG
ERAVDFAREYRSSWLGVAVMSAFACCNGDTWSSELGSVLSQRDPVSIITW
RRVPRGTNGGVSLLGVAVSLLGGLLVGFGYFVTVRYTVEAKMLLISPPQW
PIIAFGGIAGLFGSLLDSVLGGLLQFSGINEEGKIVDTPGKGVRHVSGLR
ILDNHSVNLISSIVTGVTIPLLAQRFWPVRASFLDH
BO10065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10171-PA | 330 | CG10171-PA | 1..330 | 1..330 | 1701 | 100 | Plus |
CG10171-PB | 334 | CG10171-PB | 1..334 | 1..330 | 1686 | 98.8 | Plus |