Clone BO10065 Report

Search the DGRC for BO10065

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:100
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG10171-RA
Protein status:BO10065.pep: Imported from assembly
Sequenced Size:1024

Clone Sequence Records

BO10065.3prime Sequence

884 bp (825 high quality bases) assembled on 2006-04-19

> BO10065.3prime
ATGGTCTAGAAAGCTTGCGCGCACGGGCCAGAATCTCTGGGCCAGGAGAG
GAATGGTGACGCCGGTGACGATGCTGGAAATCAGGTTGACACTATGGTTG
TCCAGGATGCGCAGTCCGCTTACGTGGCGCACTCCCTTTCCAGGTGTATC
CACAATCTTGCCTTCCTCATTGATGCCCGAGAACTGCAGCAGACCACCTA
GGACAGAGTCCAAAAGGGACCCAAAAAGTCCAGCGATGCCACCGAAGGCG
ATGATTGGCCATTGTGGTGGGCTAATCAGAAGCATTTTGGCCTCAACCGT
GTAACGAACGGTGACGAAATAGCCAAAGCCGACGAGCAGACCGCCGAGCA
GACTCACCGCGACGCCGAGCAACGAAACCCCACCATTGGTACCGCGCGGC
ACTCTGCGCCAGGTGATGATAGAAACTGGATCGCGTTGCGACAGCACGGA
TCCTAGTTCACTGGACCAGGTGTCGCCATTGCAACAGGCAAACGCACTCA
TAACGGCCACACCCAGCCAGCTGGATCGGTATTCTCGTGCGAAGTCCACC
GCCCGCTCGCCACTACCGCAGTCCAGCAGATAAAGCAATGCAAGCTGGGC
GGCCATGCCTCCGTTGCAGAGTACCTGTATCCAGTTTCGTTGGCCTTCGC
CCTCGCGAAAATCGCTCTCGAAACGGCGTTTCATGTGCGCGCGGAACTTG
GTGGCCCGCGATGAGCTGAAGAAGAACACCACCAAGCTGGCGAAGAACGG
ATGGCTGGCGATGGAGAGAATGAAGGCCACCAGAATGCCCAGCGCAGCTC
CAGATCGGTTGACGCTCCTCCGGCGCAGAGCCACAGTCATCAGGGGCAAG
GGCGCCAGTGTGGAGAAGAGCCAGCGCACCGGCG

BO10065.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10171-PA 993 CG10171-RA 125..990 884..19 4305 99.8 Minus
CG10171-PB 1005 CG10171-RB 137..1002 884..19 4305 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10171-RB 1845 CG10171-RB 270..1135 884..19 4315 99.9 Minus
CG10171-RA 1611 CG10171-RA 184..1049 884..19 4315 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13386718..13387583 19..884 4315 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 20:59:52 has no hits.

BO10065.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:12 Download gff for BO10065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10171-PA 125..993 15..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:39:29 Download gff for BO10065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10171-PB 137..1005 15..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:39:18 Download gff for BO10065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 184..1056 12..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:26 Download gff for BO10065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 184..1056 12..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:26 Download gff for BO10065.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13386711..13387583 12..884 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:39:18 Download gff for BO10065.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13379811..13380683 12..884 99   Plus

BO10065.5prime Sequence

918 bp (851 high quality bases) assembled on 2006-04-19

> BO10065.5prime
GAAGTTATCAGTCGTCATGCGTGACTGGATGCCAGTGCTCTTCTGCGGAC
TGTCCGTGCCGATCTCGCTGTTCATGTGGCTGGGCAATGTGGCGCTGTCC
AAGTTCTGGAGCAGTGACTTTGAGGAGTCCCGGGTGATTCCGCCGGTGCG
CTGGCTCTTCTCCACACTGGCGCCCTTGGCCCTGATGACTGTGGCTCTGC
GCCGGAGGAGCGTCAACCGATCTGGAGCTGCGCTGGGCATTCTGGTGGCC
TTCATTCTCTCCATCGCCAGCCATCCGTTCTTCGCCAGCTTGGTGGTGTT
CTTCTTCAGCTCATCGCGGGCCACCAAGTTCCGCGCGCACATGAAACGCC
GTTTCGAGAGCGATTTTCGCGAGGGCGAAGGCCAACGAAACTGGATACAG
GTACTCTGCAACGGAGGCATGGCCGCCCAGCTTGCATTGCTTTATCTGCT
GGACTGCGGTAGTGGCGAGCGGGCGGTGGACTTCGCACGAGAATACCGAT
CCAGCTGGCTGGGTGTGGCCGTTATGAGTGCGTTTGCCTGTTGCAATGGC
GACACCTGGTCCAGTGAACTAGGATCCGTGCTGTCGCAACGCGATCCAGT
TTCTATCATCACCTGGCGCAGAGTGCCGCGCGGTACCAATGGTGGGGTTT
CGTTGCTCGGCGTCGCGGTGAGTCTGCTCGGCGGTCTGCTCGTCGGCTTT
GGCTATTTCGTCACCGTTCGTTACACGGTTGAGGCCAAAATGCTTCTGAT
TAGCCCACCACAATGGCCAATCATCGCCTTCGGTGGCATCGCTGGACTTT
TTGGGTCCCTTTTGGACTCTGTCCTANGTGGTCTGCTGCAGTTCTCGGGC
ATCAATGAGGAAAGGCAGATTGTGGATACACCCTGGAAGGGAGTGCGCCA
CGTAAGCGGACTGCGCAT

BO10065.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10171-PA 993 CG10171-RA 1..846 17..862 4211 99.8 Plus
CG10171-PB 1005 CG10171-RB 121..858 125..862 3671 99.8 Plus
CG10171-PB 1005 CG10171-RB 1..109 17..125 545 100 Plus
CG10171-PB 1005 CG10171-RB 883..914 887..918 160 100 Plus
CG10171-PA 993 CG10171-RA 871..902 887..918 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10171-RA 1611 CG10171-RA 60..961 17..918 4409 99.4 Plus
CG10171-RB 1845 CG10171-RB 134..1047 17..918 4279 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13386806..13387599 918..125 3869 99.1 Minus
3L 28110227 3L 13387666..13387774 125..17 545 100 Minus
Blast to na_te.dros performed on 2015-02-10 04:11:11 has no hits.

BO10065.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:13 Download gff for BO10065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10171-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:39:30 Download gff for BO10065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10171-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:50:39 Download gff for BO10065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 54..961 11..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:22:06 Download gff for BO10065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 54..961 11..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:22:06 Download gff for BO10065.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13387666..13387780 11..125 97   Minus
3L 13386806..13387598 126..918 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:50:39 Download gff for BO10065.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13379906..13380698 126..918 99 <- Minus
arm_3L 13380766..13380880 11..125 97   Minus

BO10065.complete Sequence

1024 bp assembled on 2008-08-15

GenBank Submission: FJ631639

> BO10065.complete
GAAGTTATCAGTCGTCATGCGTGACTGGATGCCAGTGCTCTTCTGCGGAC
TGTCCGTGCCGATCTCGCTGTTCATGTGGCTGGGCAATGTGGCGCTGTCC
AAGTTCTGGAGCAGTGACTTTGAGGAGTCCCGGGTGATTCCGCCGGTGCG
CTGGCTCTTCTCCACACTGGCGCCCTTGGCCCTGATGACTGTGGCTCTGC
GCCGGAGGAGCGTCAACCGATCTGGAGCTGCGCTGGGCATTCTGGTGGCC
TTCATTCTCTCCATCGCCAGCCATCCGTTCTTCGCCAGCTTGGTGGTGTT
CTTCTTCAGCTCATCGCGGGCCACCAAGTTCCGCGCGCACATGAAACGCC
GTTTCGAGAGCGATTTTCGCGAGGGCGAAGGCCAACGAAACTGGATACAG
GTACTCTGCAACGGAGGCATGGCCGCCCAGCTTGCATTGCTTTATCTGCT
GGACTGCGGTAGTGGCGAGCGGGCGGTGGACTTCGCACGAGAATACCGAT
CCAGCTGGCTGGGTGTGGCCGTTATGAGTGCGTTTGCCTGTTGCAATGGC
GACACCTGGTCCAGTGAACTAGGATCCGTGCTGTCGCAACGCGATCCAGT
TTCTATCATCACCTGGCGCAGAGTGCCGCGCGGTACCAATGGTGGGGTTT
CGTTGCTCGGCGTCGCGGTGAGTCTGCTCGGCGGTCTGCTCGTCGGCTTT
GGCTATTTCGTCACCGTTCGTTACACGGTTGAGGCCAAAATGCTTCTGAT
TAGCCCACCACAATGGCCAATCATCGCCTTCGGTGGCATCGCTGGACTTT
TTGGGTCCCTTTTGGACTCTGTCCTAGGTGGTCTGCTGCAGTTCTCGGGC
ATCAATGAGGAAGGCAAGATTGTGGATACACCTGGAAAGGGAGTGCGCCA
CGTAAGCGGACTGCGCATCCTGGACAACCATAGTGTCAACCTGATTTCCA
GCATCGTCACCGGCGTCACCATTCCTCTCCTGGCCCAGAGATTCTGGCCC
GTGCGCGCAAGCTTTCTAGACCAT

BO10065.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10171-RA 993 CG10171-PA 1..990 17..1006 4950 100 Plus
CG10171-RB 1005 CG10171-PB 1..1002 17..1006 4795 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10171-RA 1611 CG10171-RA 60..1049 17..1006 4950 100 Plus
CG10171-RB 1845 CG10171-RB 134..1135 17..1006 4795 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13386718..13387599 1006..125 4410 100 Minus
3L 28110227 3L 13387666..13387774 125..17 545 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:19:09 has no hits.

BO10065.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:07 Download gff for BO10065.complete
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 90..1092 11..1013 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:24 Download gff for BO10065.complete
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 60..1049 17..1008 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:13 Download gff for BO10065.complete
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 96..1085 17..1008 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:44 Download gff for BO10065.complete
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 60..1049 17..1008 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:44 Download gff for BO10065.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13386716..13387598 126..1008 99 <- Minus
3L 13387666..13387774 17..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:24 Download gff for BO10065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13379816..13380698 126..1008 99 <- Minus
arm_3L 13380766..13380874 17..125 100   Minus

BO10065.pep Sequence

Translation from 16 to 1024

> BO10065.pep
MRDWMPVLFCGLSVPISLFMWLGNVALSKFWSSDFEESRVIPPVRWLFST
LAPLALMTVALRRRSVNRSGAALGILVAFILSIASHPFFASLVVFFFSSS
RATKFRAHMKRRFESDFREGEGQRNWIQVLCNGGMAAQLALLYLLDCGSG
ERAVDFAREYRSSWLGVAVMSAFACCNGDTWSSELGSVLSQRDPVSIITW
RRVPRGTNGGVSLLGVAVSLLGGLLVGFGYFVTVRYTVEAKMLLISPPQW
PIIAFGGIAGLFGSLLDSVLGGLLQFSGINEEGKIVDTPGKGVRHVSGLR
ILDNHSVNLISSIVTGVTIPLLAQRFWPVRASFLDH

BO10065.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10171-PA 330 CG10171-PA 1..330 1..330 1701 100 Plus
CG10171-PB 334 CG10171-PB 1..334 1..330 1686 98.8 Plus