Clone BO10070 Report

Search the DGRC for BO10070

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:100
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG2678-RA
Protein status:BO10070.pep: full length peptide match
Sequenced Size:1336

Clone Sequence Records

BO10070.3prime Sequence

923 bp (823 high quality bases) assembled on 2006-04-19

> BO10070.3prime
ATGGTCTAGAAAGCTTGCCATCGCTATTACGTTGTTGCTGTGAATGCGTT
TTTTGTGCTTTCGCAAGTAGTTAACATCTACAAATACCAATGAGCAAAAT
TCGCAACGAAACAGATCTCCCATGTGACCACGCTCGTGCCTTTTGAGATG
TTTTTCTGTTTTGAACTCCTCGGAACAATAGGTACATTTTTTAAGATGAT
GTTGGCGATTGTGAGTAAGCATATGCCGCTTCAAGGCGTAGACACTACTG
AACTTCTTTTGGCAAATATCGCATATCGGTTTCGGCTTTAGCATAGGTGG
AATGCTGCACGTGCCATTGAAGGTGTTCTTAGTCCACTTTGGTTTTAGAT
CCTGCGCTTGATCGCTGTCGTCCGAGTCAGGATCCTTCGTGGACTCCGAT
TTTGAAGAGCCCGGCCTTTGTTTGTGCTCTCTGCGATGGATTTCCAGCTG
AACGTGTTCGATAAATACCGCTGAGCACTGGCTGCAGGAGAGCGGACCGT
CACTGTCGTGGGTGCGCAGGTGCCTTTTAAGGTGATCTTTACGCATGAAA
GCCTTCGAGCAGTGGAAACACTTGTGCGCTGGCTTGCTTAGGTGGTTTCG
CAAATGCCGCTTGAGGTTCGATTTTTGCATATAAGTGCGTGGGCAGTAGG
GACACCTGTTGCACAGATCGGTGATGTGGGTCCTTAACTGGGTCTGGGAA
CAAAATCGCTTAGAACAGTGCGGGCAGTTGTAGTAGCCATCGGCATCGCA
GATCATTTTGGTACTTCTTGTAGCTTCCTTTGGGATCATGTCTGCCTGTT
CTTCTGTGCGACAAGTCCGCTTACGAGGATGCAGGGTGAAGGACTCCGGT
GGGCCATCAATATTTCCCTCTTGGAGCTTCGCTTGAAGTGTTTGTTTTTG
ACTAAGATCATCATCTGGGTTCT

BO10070.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2678-PA 1305 CG2678-RA 403..1302 918..19 4475 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2678-RA 1811 CG2678-RA 631..1535 923..19 4495 99.8 Minus
CG2678-RB 2003 CG2678-RB 631..1271 923..283 3175 99.7 Minus
CG2678-RB 2003 CG2678-RB 1366..1630 283..19 1325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7914790..7915275 768..283 2430 100 Minus
3R 32079331 3R 7915913..7916177 283..19 1325 100 Minus
3R 32079331 3R 7914481..7914637 923..767 755 98.7 Minus
Blast to na_te.dros performed on 2015-02-12 03:55:22 has no hits.

BO10070.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:22 Download gff for BO10070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2678-PA 398..1305 18..923 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:39:39 Download gff for BO10070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2678-PA 398..1305 18..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:17:24 Download gff for BO10070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 631..1535 19..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:52 Download gff for BO10070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 631..1535 19..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:52 Download gff for BO10070.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7914481..7914637 767..923 98 -> Minus
3R 7914792..7915274 284..766 100 -> Minus
3R 7915913..7916177 19..283 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:17:24 Download gff for BO10070.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3740203..3740359 767..923 98 -> Minus
arm_3R 3740514..3740996 284..766 100 -> Minus
arm_3R 3741635..3741899 19..283 100   Minus

BO10070.5prime Sequence

929 bp (802 high quality bases) assembled on 2006-04-19

> BO10070.5prime
GAAGTTATCAGTCGACATGATGCACAGCGCGAAGAACGTGTGCCGGACTT
GTATGGACGAGACCGGCACCCTGGTAGATATATTCGCCAATGTAAGGGAT
CCTGTGCTCGACGAACCGGAGATGAGCCTCTCGCACATCCTGGCCAGGTG
TACCGAACGTCCAGTGAAACGCGGCGACCTGCTGCCGCAGTTCATATGCG
TTTCCTGCGTCCTGGCCGTGCAGAATGCTTTCCGGTTCAAGTGGCAAAGC
GAGCAGAGCTACCAGCACTTCTTCCGCGTCCTAAACCAGTCGGGTGCTCC
GGAAAACCAAGTGCACTTAGCTGCATGTAATGGGGATAAGAACCAGATAA
TAAACCAGAAAATGCAGCTCAAAAGCGATCGTCAACAGGATACGCAGCAA
ATGACAAAAACGCAGAAACCAGATGATGATCTTAGTCAAAAACAAACACT
CCAAGCGAAGCTCCAAGAGGGAAATATTGATGGCCCACCGGAGTCCTTCA
CCCTGCATCCTCGTAAGCGGACTTGTCGCACAGAAGAACAGGCAGACATG
ATCCCAAAGGAAGCTACAAGAAGTACCAAAATGATCTGCGATGCCGATGG
CTACTACAACTGCCCGCACTGTTCTAAGCGATTTTGTTCCCAGACCCAGT
TAAGGACCCACATCACCGATCTGTGCAACAGGTGTCCCTACTGCCCACGC
ACTTATATGCAAAAATCGAACCTCAAGCGGCATTTGCGAAACCACCTAAG
CAAGCCAGCGCACAAGTGTTTCCACTGCTCGAAGGCTTTCATGCGTAAAG
ATCACCCTTAAAGGCACCTGCGCACCCACGACAGTGACGGTCCGCTCTCC
TGCAGCCAGTGCTCAGCGGTATTATCGAACACGTTCAGCTGGGAATCCAT
CGCAGAGAGCACAAACAAAGGCCGGGCTC

BO10070.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2678-PA 1305 CG2678-RA 1..857 17..873 4235 99.7 Plus
CG2678-PA 1305 CG2678-RA 857..914 872..929 265 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2678-RB 2003 CG2678-RB 234..1147 17..929 4500 99.6 Plus
CG2678-RA 1811 CG2678-RA 234..1147 17..929 4500 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7914084..7914637 17..570 2770 100 Plus
3R 32079331 3R 7914790..7915151 569..929 1715 98.9 Plus
Blast to na_te.dros performed 2015-02-04 03:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 7063..7127 384..448 109 63.1 Plus

BO10070.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:24 Download gff for BO10070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2678-PA 1..914 17..929 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:39:41 Download gff for BO10070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2678-PA 1..914 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:57:06 Download gff for BO10070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 234..1147 17..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:32:52 Download gff for BO10070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 234..1147 17..929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:32:52 Download gff for BO10070.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7914084..7914637 17..570 100 -> Plus
3R 7914792..7915151 571..929 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:57:06 Download gff for BO10070.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3739806..3740359 17..570 100 -> Plus
arm_3R 3740514..3740873 571..929 98   Plus

BO10070.complete Sequence

1336 bp (1336 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631640

> BO10070.complete
GAAGTTATCAGTCGACATGATGCACAGCGCGAAGAACGTGTGCCGGACTT
GTATGGACGAGACCGGCACCCTGGTAGATATATTCGCCAATGTAAGGGAT
CCTGTGCTCGACGAACCGGAGATGAGCCTCTCGCACATCCTGGCCAGGTG
TACCGAACGTCCAGTGAAACGCGGCGACCTGCTGCCGCAGTTCATATGCG
TTTCCTGCGTCCTGGCCGTGCAGAATGCTTTCCGGTTCAAGTGGCAAAGC
GAGCAGAGCTACCAGCACTTCTTCCGCGTCCTAAACCAGTCGGGTGCTCC
GGAAAACCAAGTGCACTTAGCTGCATGTAATGGGGATAAGAACCAGATAA
TAAACCAGAAAATGCAGCTCAAAAGCGATCGTCAACAGGATACGCAGCAA
ATGACAAAAACGCAGAAACCAGATGATGATCTTAGTCAAAAACAAACACT
CCAAGCGAAGCTCCAAGAGGGAAATATTGATGGCCCACCGGAGTCCTTCA
CCCTGCATCCTCGTAAGCGGACTTGTCGCACAGAAGAACAGGCAGACATG
ATCCCAAAGGAAGCTACAAGAAGTACCAAAATGATCTGCGATGCCGATGG
CTACTACAACTGCCCGCACTGTTCTAAGCGATTTTGTTCCCAGACCCAGT
TAAGGACCCACATCACCGATCTGTGCAACAGGTGTCCCTACTGCCCACGC
ACTTATATGCAAAAATCGAACCTCAAGCGGCATTTGCGAAACCACCTAAG
CAAGCCAGCGCACAAGTGTTTCCACTGCTCGAAGGCTTTCATGCGTAAAG
ATCACCTTAAAAGGCACCTGCGCACCCACGACAGTGACGGTCCGCTCTCC
TGCAGCCAGTGCTCAGCGGTATTTATCGAACACGTTCAGCTGGAAATCCA
TCGCAGAGAGCACAAACAAAGGCCGGGCTCTTCAAAATCGGAGTCCACGA
AGGATCCTGACTCGGACGACAGCGATCAAGCGCAGGATCTAAAACCAAAG
TGGACTAAGAACACCTTCAATGGCACGTGCAGCATTCCACCTATGCTAAA
GCCGAAACCGATATGCGATATTTGCCAAAAGAAGTTCAGTAGTGTCTACG
CCTTGAAGCGGCATATGCTTACTCACAATCGCCAACATCATCTTAAAAAA
TGTACCTATTGTTCCGAGGAGTTCAAAACAGAAAAACATCTCAAAAGGCA
CGAGCGTGGTCACATGGGAGATCTGTTTCGTTGCGAATTTTGCTCATTGG
TATTTGTAGATGTTAACTACTTGCGAAAGCACAAAAAACGCATTCACAGC
AACAACGTAATAGCGATGGCAAGCTTTCTAGACCAT

BO10070.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2678-RA 1305 CG2678-PA 1..1302 17..1318 6510 100 Plus
CG2678-RB 1041 CG2678-PB 1..1038 17..1054 5190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2678-RA 1811 CG2678-RA 234..1535 17..1318 6510 100 Plus
CG2678-RB 2003 CG2678-RB 234..1271 17..1054 5190 100 Plus
CG2678-RB 2003 CG2678-RB 1366..1630 1054..1318 1325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7914084..7914637 17..570 2770 100 Plus
3R 32079331 3R 7914790..7915275 569..1054 2430 100 Plus
3R 32079331 3R 7915913..7916177 1054..1318 1325 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:46:23 has no hits.

BO10070.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:49 Download gff for BO10070.complete
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 1..1305 17..1319 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:38 Download gff for BO10070.complete
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 228..1529 17..1318 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:57 Download gff for BO10070.complete
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 234..1535 17..1320 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:49 Download gff for BO10070.complete
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 228..1529 17..1318 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:03 Download gff for BO10070.complete
Subject Subject Range Query Range Percent Splice Strand
CG2678-RA 234..1535 17..1320 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:03 Download gff for BO10070.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7914084..7914637 17..570 100 -> Plus
3R 7914792..7915274 571..1053 100 -> Plus
3R 7915913..7916177 1054..1320 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:57 Download gff for BO10070.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3739806..3740359 17..570 100 -> Plus
arm_3R 3740514..3740996 571..1053 100 -> Plus
arm_3R 3741635..3741899 1054..1320 99   Plus

BO10070.pep Sequence

Translation from 16 to 1336

> BO10070.pep
MMHSAKNVCRTCMDETGTLVDIFANVRDPVLDEPEMSLSHILARCTERPV
KRGDLLPQFICVSCVLAVQNAFRFKWQSEQSYQHFFRVLNQSGAPENQVH
LAACNGDKNQIINQKMQLKSDRQQDTQQMTKTQKPDDDLSQKQTLQAKLQ
EGNIDGPPESFTLHPRKRTCRTEEQADMIPKEATRSTKMICDADGYYNCP
HCSKRFCSQTQLRTHITDLCNRCPYCPRTYMQKSNLKRHLRNHLSKPAHK
CFHCSKAFMRKDHLKRHLRTHDSDGPLSCSQCSAVFIEHVQLEIHRREHK
QRPGSSKSESTKDPDSDDSDQAQDLKPKWTKNTFNGTCSIPPMLKPKPIC
DICQKKFSSVYALKRHMLTHNRQHHLKKCTYCSEEFKTEKHLKRHERGHM
GDLFRCEFCSLVFVDVNYLRKHKKRIHSNNVIAMASFLDH

BO10070.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2678-PA 434 CG2678-PA 1..434 1..434 2381 100 Plus
CG2678-PB 346 CG2678-PB 1..346 1..346 1891 100 Plus
CG15436-PA 346 CG15436-PA 4..340 8..395 366 26.6 Plus
Meics-PB 571 CG8474-PB 21..451 9..428 343 24.2 Plus
crol-PD 878 CG14938-PD 346..641 159..427 308 28.7 Plus
CG15436-PA 346 CG15436-PA 126..313 197..423 276 27.9 Plus
Meics-PB 571 CG8474-PB 372..567 197..399 249 30.9 Plus
CG15436-PA 346 CG15436-PA 128..288 223..427 221 26.1 Plus