Clone Sequence Records
BO10070.3prime Sequence
923 bp (823 high quality bases) assembled on 2006-04-19
> BO10070.3prime
ATGGTCTAGAAAGCTTGCCATCGCTATTACGTTGTTGCTGTGAATGCGTT
TTTTGTGCTTTCGCAAGTAGTTAACATCTACAAATACCAATGAGCAAAAT
TCGCAACGAAACAGATCTCCCATGTGACCACGCTCGTGCCTTTTGAGATG
TTTTTCTGTTTTGAACTCCTCGGAACAATAGGTACATTTTTTAAGATGAT
GTTGGCGATTGTGAGTAAGCATATGCCGCTTCAAGGCGTAGACACTACTG
AACTTCTTTTGGCAAATATCGCATATCGGTTTCGGCTTTAGCATAGGTGG
AATGCTGCACGTGCCATTGAAGGTGTTCTTAGTCCACTTTGGTTTTAGAT
CCTGCGCTTGATCGCTGTCGTCCGAGTCAGGATCCTTCGTGGACTCCGAT
TTTGAAGAGCCCGGCCTTTGTTTGTGCTCTCTGCGATGGATTTCCAGCTG
AACGTGTTCGATAAATACCGCTGAGCACTGGCTGCAGGAGAGCGGACCGT
CACTGTCGTGGGTGCGCAGGTGCCTTTTAAGGTGATCTTTACGCATGAAA
GCCTTCGAGCAGTGGAAACACTTGTGCGCTGGCTTGCTTAGGTGGTTTCG
CAAATGCCGCTTGAGGTTCGATTTTTGCATATAAGTGCGTGGGCAGTAGG
GACACCTGTTGCACAGATCGGTGATGTGGGTCCTTAACTGGGTCTGGGAA
CAAAATCGCTTAGAACAGTGCGGGCAGTTGTAGTAGCCATCGGCATCGCA
GATCATTTTGGTACTTCTTGTAGCTTCCTTTGGGATCATGTCTGCCTGTT
CTTCTGTGCGACAAGTCCGCTTACGAGGATGCAGGGTGAAGGACTCCGGT
GGGCCATCAATATTTCCCTCTTGGAGCTTCGCTTGAAGTGTTTGTTTTTG
ACTAAGATCATCATCTGGGTTCT
BO10070.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2678-PA | 1305 | CG2678-RA | 403..1302 | 918..19 | 4475 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2678-RA | 1811 | CG2678-RA | 631..1535 | 923..19 | 4495 | 99.8 | Minus |
CG2678-RB | 2003 | CG2678-RB | 631..1271 | 923..283 | 3175 | 99.7 | Minus |
CG2678-RB | 2003 | CG2678-RB | 1366..1630 | 283..19 | 1325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7914790..7915275 | 768..283 | 2430 | 100 | Minus |
3R | 32079331 | 3R | 7915913..7916177 | 283..19 | 1325 | 100 | Minus |
3R | 32079331 | 3R | 7914481..7914637 | 923..767 | 755 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:55:22 has no hits.
BO10070.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:22 Download gff for
BO10070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-PA | 398..1305 | 18..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:39:39 Download gff for
BO10070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-PA | 398..1305 | 18..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:17:24 Download gff for
BO10070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 631..1535 | 19..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:52 Download gff for
BO10070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 631..1535 | 19..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:52 Download gff for
BO10070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7914481..7914637 | 767..923 | 98 | -> | Minus |
3R | 7914792..7915274 | 284..766 | 100 | -> | Minus |
3R | 7915913..7916177 | 19..283 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:17:24 Download gff for
BO10070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3740203..3740359 | 767..923 | 98 | -> | Minus |
arm_3R | 3740514..3740996 | 284..766 | 100 | -> | Minus |
arm_3R | 3741635..3741899 | 19..283 | 100 | | Minus |
BO10070.5prime Sequence
929 bp (802 high quality bases) assembled on 2006-04-19
> BO10070.5prime
GAAGTTATCAGTCGACATGATGCACAGCGCGAAGAACGTGTGCCGGACTT
GTATGGACGAGACCGGCACCCTGGTAGATATATTCGCCAATGTAAGGGAT
CCTGTGCTCGACGAACCGGAGATGAGCCTCTCGCACATCCTGGCCAGGTG
TACCGAACGTCCAGTGAAACGCGGCGACCTGCTGCCGCAGTTCATATGCG
TTTCCTGCGTCCTGGCCGTGCAGAATGCTTTCCGGTTCAAGTGGCAAAGC
GAGCAGAGCTACCAGCACTTCTTCCGCGTCCTAAACCAGTCGGGTGCTCC
GGAAAACCAAGTGCACTTAGCTGCATGTAATGGGGATAAGAACCAGATAA
TAAACCAGAAAATGCAGCTCAAAAGCGATCGTCAACAGGATACGCAGCAA
ATGACAAAAACGCAGAAACCAGATGATGATCTTAGTCAAAAACAAACACT
CCAAGCGAAGCTCCAAGAGGGAAATATTGATGGCCCACCGGAGTCCTTCA
CCCTGCATCCTCGTAAGCGGACTTGTCGCACAGAAGAACAGGCAGACATG
ATCCCAAAGGAAGCTACAAGAAGTACCAAAATGATCTGCGATGCCGATGG
CTACTACAACTGCCCGCACTGTTCTAAGCGATTTTGTTCCCAGACCCAGT
TAAGGACCCACATCACCGATCTGTGCAACAGGTGTCCCTACTGCCCACGC
ACTTATATGCAAAAATCGAACCTCAAGCGGCATTTGCGAAACCACCTAAG
CAAGCCAGCGCACAAGTGTTTCCACTGCTCGAAGGCTTTCATGCGTAAAG
ATCACCCTTAAAGGCACCTGCGCACCCACGACAGTGACGGTCCGCTCTCC
TGCAGCCAGTGCTCAGCGGTATTATCGAACACGTTCAGCTGGGAATCCAT
CGCAGAGAGCACAAACAAAGGCCGGGCTC
BO10070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2678-PA | 1305 | CG2678-RA | 1..857 | 17..873 | 4235 | 99.7 | Plus |
CG2678-PA | 1305 | CG2678-RA | 857..914 | 872..929 | 265 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2678-RB | 2003 | CG2678-RB | 234..1147 | 17..929 | 4500 | 99.6 | Plus |
CG2678-RA | 1811 | CG2678-RA | 234..1147 | 17..929 | 4500 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7914084..7914637 | 17..570 | 2770 | 100 | Plus |
3R | 32079331 | 3R | 7914790..7915151 | 569..929 | 1715 | 98.9 | Plus |
Blast to na_te.dros performed 2015-02-04 03:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 7063..7127 | 384..448 | 109 | 63.1 | Plus |
BO10070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:24 Download gff for
BO10070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-PA | 1..914 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:39:41 Download gff for
BO10070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-PA | 1..914 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:57:06 Download gff for
BO10070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 234..1147 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:32:52 Download gff for
BO10070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 234..1147 | 17..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:32:52 Download gff for
BO10070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7914084..7914637 | 17..570 | 100 | -> | Plus |
3R | 7914792..7915151 | 571..929 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:57:06 Download gff for
BO10070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3739806..3740359 | 17..570 | 100 | -> | Plus |
arm_3R | 3740514..3740873 | 571..929 | 98 | | Plus |
BO10070.complete Sequence
1336 bp (1336 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631640
> BO10070.complete
GAAGTTATCAGTCGACATGATGCACAGCGCGAAGAACGTGTGCCGGACTT
GTATGGACGAGACCGGCACCCTGGTAGATATATTCGCCAATGTAAGGGAT
CCTGTGCTCGACGAACCGGAGATGAGCCTCTCGCACATCCTGGCCAGGTG
TACCGAACGTCCAGTGAAACGCGGCGACCTGCTGCCGCAGTTCATATGCG
TTTCCTGCGTCCTGGCCGTGCAGAATGCTTTCCGGTTCAAGTGGCAAAGC
GAGCAGAGCTACCAGCACTTCTTCCGCGTCCTAAACCAGTCGGGTGCTCC
GGAAAACCAAGTGCACTTAGCTGCATGTAATGGGGATAAGAACCAGATAA
TAAACCAGAAAATGCAGCTCAAAAGCGATCGTCAACAGGATACGCAGCAA
ATGACAAAAACGCAGAAACCAGATGATGATCTTAGTCAAAAACAAACACT
CCAAGCGAAGCTCCAAGAGGGAAATATTGATGGCCCACCGGAGTCCTTCA
CCCTGCATCCTCGTAAGCGGACTTGTCGCACAGAAGAACAGGCAGACATG
ATCCCAAAGGAAGCTACAAGAAGTACCAAAATGATCTGCGATGCCGATGG
CTACTACAACTGCCCGCACTGTTCTAAGCGATTTTGTTCCCAGACCCAGT
TAAGGACCCACATCACCGATCTGTGCAACAGGTGTCCCTACTGCCCACGC
ACTTATATGCAAAAATCGAACCTCAAGCGGCATTTGCGAAACCACCTAAG
CAAGCCAGCGCACAAGTGTTTCCACTGCTCGAAGGCTTTCATGCGTAAAG
ATCACCTTAAAAGGCACCTGCGCACCCACGACAGTGACGGTCCGCTCTCC
TGCAGCCAGTGCTCAGCGGTATTTATCGAACACGTTCAGCTGGAAATCCA
TCGCAGAGAGCACAAACAAAGGCCGGGCTCTTCAAAATCGGAGTCCACGA
AGGATCCTGACTCGGACGACAGCGATCAAGCGCAGGATCTAAAACCAAAG
TGGACTAAGAACACCTTCAATGGCACGTGCAGCATTCCACCTATGCTAAA
GCCGAAACCGATATGCGATATTTGCCAAAAGAAGTTCAGTAGTGTCTACG
CCTTGAAGCGGCATATGCTTACTCACAATCGCCAACATCATCTTAAAAAA
TGTACCTATTGTTCCGAGGAGTTCAAAACAGAAAAACATCTCAAAAGGCA
CGAGCGTGGTCACATGGGAGATCTGTTTCGTTGCGAATTTTGCTCATTGG
TATTTGTAGATGTTAACTACTTGCGAAAGCACAAAAAACGCATTCACAGC
AACAACGTAATAGCGATGGCAAGCTTTCTAGACCAT
BO10070.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2678-RA | 1305 | CG2678-PA | 1..1302 | 17..1318 | 6510 | 100 | Plus |
CG2678-RB | 1041 | CG2678-PB | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2678-RA | 1811 | CG2678-RA | 234..1535 | 17..1318 | 6510 | 100 | Plus |
CG2678-RB | 2003 | CG2678-RB | 234..1271 | 17..1054 | 5190 | 100 | Plus |
CG2678-RB | 2003 | CG2678-RB | 1366..1630 | 1054..1318 | 1325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:46:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7914084..7914637 | 17..570 | 2770 | 100 | Plus |
3R | 32079331 | 3R | 7914790..7915275 | 569..1054 | 2430 | 100 | Plus |
3R | 32079331 | 3R | 7915913..7916177 | 1054..1318 | 1325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:46:23 has no hits.
BO10070.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:49 Download gff for
BO10070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 1..1305 | 17..1319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:38 Download gff for
BO10070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 228..1529 | 17..1318 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:57 Download gff for
BO10070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 234..1535 | 17..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:49 Download gff for
BO10070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 228..1529 | 17..1318 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:03 Download gff for
BO10070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2678-RA | 234..1535 | 17..1320 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:03 Download gff for
BO10070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7914084..7914637 | 17..570 | 100 | -> | Plus |
3R | 7914792..7915274 | 571..1053 | 100 | -> | Plus |
3R | 7915913..7916177 | 1054..1320 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:57 Download gff for
BO10070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3739806..3740359 | 17..570 | 100 | -> | Plus |
arm_3R | 3740514..3740996 | 571..1053 | 100 | -> | Plus |
arm_3R | 3741635..3741899 | 1054..1320 | 99 | | Plus |
BO10070.pep Sequence
Translation from 16 to 1336
> BO10070.pep
MMHSAKNVCRTCMDETGTLVDIFANVRDPVLDEPEMSLSHILARCTERPV
KRGDLLPQFICVSCVLAVQNAFRFKWQSEQSYQHFFRVLNQSGAPENQVH
LAACNGDKNQIINQKMQLKSDRQQDTQQMTKTQKPDDDLSQKQTLQAKLQ
EGNIDGPPESFTLHPRKRTCRTEEQADMIPKEATRSTKMICDADGYYNCP
HCSKRFCSQTQLRTHITDLCNRCPYCPRTYMQKSNLKRHLRNHLSKPAHK
CFHCSKAFMRKDHLKRHLRTHDSDGPLSCSQCSAVFIEHVQLEIHRREHK
QRPGSSKSESTKDPDSDDSDQAQDLKPKWTKNTFNGTCSIPPMLKPKPIC
DICQKKFSSVYALKRHMLTHNRQHHLKKCTYCSEEFKTEKHLKRHERGHM
GDLFRCEFCSLVFVDVNYLRKHKKRIHSNNVIAMASFLDH
BO10070.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2678-PA | 434 | CG2678-PA | 1..434 | 1..434 | 2381 | 100 | Plus |
CG2678-PB | 346 | CG2678-PB | 1..346 | 1..346 | 1891 | 100 | Plus |
CG15436-PA | 346 | CG15436-PA | 4..340 | 8..395 | 366 | 26.6 | Plus |
Meics-PB | 571 | CG8474-PB | 21..451 | 9..428 | 343 | 24.2 | Plus |
crol-PD | 878 | CG14938-PD | 346..641 | 159..427 | 308 | 28.7 | Plus |
CG15436-PA | 346 | CG15436-PA | 126..313 | 197..423 | 276 | 27.9 | Plus |
Meics-PB | 571 | CG8474-PB | 372..567 | 197..399 | 249 | 30.9 | Plus |
CG15436-PA | 346 | CG15436-PA | 128..288 | 223..427 | 221 | 26.1 | Plus |