Clone Sequence Records
BO10071.3prime Sequence
902 bp (859 high quality bases) assembled on 2006-04-19
> BO10071.3prime
ATGGTCTAGAAAGCTTGCCTTGCTGGTGTCCACAAGTATCTTGGGATTGG
CCACGTGAAAAACGCTGGGAACCATTCCCGCCAGAGTGGTGAACAAACTT
TCCGATATGTCATCAGGCAGTAGCAGTTGCAAGGTGCTTAACTCAGCTCC
GCCCCAAGATGCAGATTCTATCATAAACCCCTTGGCGCACTTAAACACCA
GCTCTGCTCTTCTGATGCACCACTGGACGGTCATGTCCTCGCTCATCTCG
TGACGCAGCAGAGCCGGAATGGTCAGCGTGGTGATGTCGTGCCTGCTGGC
TGTCTTTAGGATGTTTCGCAAACCCAAGATCACTGGATGCCGCGAGTTGA
TCTCACTGGGACTGTTGATGGGTTCGTCCGAAATCAGGTGAAAAATAACA
TGCGTTTGCGAGAGATTCGAGTGCTTGGTGATGAAGAAGTCGCCTGTTTT
CAGTCTGGGCACGCTCTTCTTGGTCGGCGAGGGTGTGCCACTGCCCTCGG
CACTGCTGTTGCTAGTACTACTGCCACTGGAATCTTCAGTGGTCAAATTC
TTAATCTGCTTCTCGATCTTTTCCATCTGAACGTCTATTTGCTCAAAATG
AAACTCGGTGGACTTGTTGGCATTTTTAATGATATTCTTGTTGGCCTGGG
CCTGAATCGATGGGGTCAGCACGACGACGCCGCAGAGGGAACTGGAGTAC
AATCCCAGAGCCATGTTAAGGCCATTAAGACTCTCCTCGGCGTGCAGCGG
ACTGCAGAGCTCCGTGACATTGGCACTCAGGATGCGTATGTTGTGCATGT
GCTTCAGCTGGGAGCCCAGGTGAATGGTGAAGCTCTCCTCCATGGAGGGC
TGTTGCGAGACGAACATGGAGGAGCGGTTACCCAGCGGCGTGGCCACCGG
CG
BO10071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9986-PA | 1608 | CG9986-RA | 722..1605 | 902..19 | 4420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9986-RA | 2179 | CG9986-RA | 811..1694 | 902..19 | 4420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28606945..28607710 | 902..137 | 3830 | 100 | Minus |
| 3R | 32079331 | 3R | 28607768..28607887 | 138..19 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:39:10 has no hits.
BO10071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:25 Download gff for
BO10071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-PA | 722..1608 | 18..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:39:42 Download gff for
BO10071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-PA | 722..1608 | 18..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:45:47 Download gff for
BO10071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 811..1699 | 13..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:23:47 Download gff for
BO10071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 811..1699 | 13..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:23:47 Download gff for
BO10071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28606945..28607710 | 137..902 | 100 | -> | Minus |
| 3R | 28607770..28607892 | 13..136 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:45:47 Download gff for
BO10071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24432667..24433432 | 137..902 | 100 | -> | Minus |
| arm_3R | 24433492..24433614 | 13..136 | 97 | | Minus |
BO10071.5prime Sequence
906 bp (800 high quality bases) assembled on 2006-04-19
> BO10071.5prime
GAAGTTATCAGTCGACATGGACTCTACTGCCACTCGCACGCTGCCCTTTG
TGTACAAGTATAAAAATCATAAAGGCCAAGACTGCGAATCCCGGCTGGAC
ATCACTTTTCCCTTTGACCAGGAAAATCTGGAGGAGTGTATCACCCAGCT
GATGGCTCCCAACCAGATGGACCCTATGATGCGGTACCTGGACGAGAATA
TCAAACTCGAACGGGAGCTGCAGAAATTCGTGGATACGGAGCAGCAAAAT
TTCCTGGACGACCAAGCCGAAAAGCTACTCAAACAGGCGGCCAACGAGGA
GATGGACATCGAGGCCATTGTGCGGGACACAGAGAGGCTGTACAAGGAGG
AACTACTGCAATTTGCCGATCGTGTGGGTCCCAGCGATGCTGACATATTC
GCCCAGAGCTTCCATCGCCTGGTGCACTCTTCGTCCCTGGAGGACATACT
CAAGCGAGAGCGTGCATATGCCAAGGTGGTGTCCGACATGACCGATCTTA
TGGACAGCGAGGTGGAGACGTTGAACAACTCTCAGCAGCAGGAAATGGAT
AGCCAGATAAATCAGTTGGACATCACCACCACCTCGGAGGATATCAACAA
TCTGCTGGCGCAGCAGTACACCACGCAGAATTATGTGCGGAAGCGATACG
AATCCGAACTAGAAGCAATGATGGGTCATCAGAAGAATGAGTATCGAAAT
TGGATCACCAGTCAGGTCAGTCAGATGTTTCAAGTGTCGCCGGTGGCCAC
GCCGCTGGGTAACCGCTCCTCCATGTTCGTCTCGCAACAGCCCTCCATGG
AGGAGAGCTTCACCATTCACCTGGGCTCCCAGCTGAAGCACATGCACAAC
ATACGCATCCTGAGTGCCNATGTCACGGAGCTCTGCAGTCCGCTGCACGC
GAAGGA
BO10071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9986-PA | 1608 | CG9986-RA | 1..884 | 17..900 | 4401 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9986-RA | 2179 | CG9986-RA | 90..973 | 17..900 | 4409 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28606411..28607107 | 204..900 | 3474 | 99.9 | Plus |
| 3R | 32079331 | 3R | 28606168..28606354 | 17..203 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:16:29 has no hits.
BO10071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:26 Download gff for
BO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:39:44 Download gff for
BO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:57:15 Download gff for
BO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 84..978 | 8..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:08 Download gff for
BO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 84..978 | 8..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:08 Download gff for
BO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28606162..28606354 | 8..203 | 97 | -> | Plus |
| 3R | 28606411..28607112 | 204..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:57:15 Download gff for
BO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24431884..24432076 | 8..203 | 97 | -> | Plus |
| arm_3R | 24432133..24432834 | 204..905 | 99 | | Plus |
BO10071.complete Sequence
1639 bp (1639 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631641
> BO10071.complete
GAAGTTATCAGTCGACATGGACTCTACTGCCACTCGCACGCTGCCCTTTG
TGTACAAGTATAAAAATCATAAAGGCCAAGACTGCGAATCCCGGCTGGAC
ATCACTTTTCCCTTTGACCAGGAAAATCTGGAGGAGTGTATCACCCAGCT
GATGGCTCCCAACCAGATGGACCCTATGATGCGGTACCTGGACGAGAATA
TCAAACTCGAACGGGAGCTGCAGAAATTCGTGGATACGGAGCAGCAAAAT
TTCCTGGACGACCAAGCCGAAAAGCTACTCAAACAGGCGGCCAACGAGGA
GATGGACATCGAGGCCATTGTGCGGGACACAGAGAGGCTGTACAAGGAGG
AACTACTGCAATTTGCCGATCGTGTGGGTCCCAGCGATGCTGACATATTC
GCCCAGAGCTTCCATCGCCTGGTGCACTCTTCGTCCCTGGAGGACATACT
CAAGCGAGAGCGTGCATATGCCAAGGTGGTGTCCGACATGACCGATCTTA
TGGACAGCGAGGTGGAGACGTTGAACAACTCTCAGCAGCAGGAAATGGAT
AGCCAGATAAATCAGTTGGACATCACCACCACCTCGGAGGATATCAACAA
TCTGCTGGCGCAGCAGTACACCACGCAGAATTATGTGCGGAAGCGATACG
AATCCGAACTAGAAGCAATGATGGGTCATCAGAAGAATGAGTATCGAAAT
TGGATCACCAGTCAGGTCAGTCAGATGTTTCAAGTGTCGCCGGTGGCCAC
GCCGCTGGGTAACCGCTCCTCCATGTTCGTCTCGCAACAGCCCTCCATGG
AGGAGAGCTTCACCATTCACCTGGGCTCCCAGCTGAAGCACATGCACAAC
ATACGCATCCTGAGTGCCAATGTCACGGAGCTCTGCAGTCCGCTGCACGC
CGAGGAGAGTCTTAATGGCCTTAACATGGCTCTGGGATTGTACTCCAGTT
CCCTCTGCGGCGTCGTCGTGCTGACCCCATCGATTCAGGCCCAGGCCAAC
AAGAATATCATTAAAAATGCCAACAAGTCCACCGAGTTTCATTTTGAGCA
AATAGACGTTCAGATGGAAAAGATCGAGAAGCAGATTAAGAATTTGACCA
CTGAAGATTCCAGTGGCAGTAGTACTAGCAACAGCAGTGCCGAGGGCAGT
GGCACACCCTCGCCGACCAAGAAGAGCGTGCCCAGACTGAAAACAGGCGA
CTTCTTCATCACCAAGCACTCGAATCTCTCGCAAACGCATGTTATTTTTC
ACCTGATTTCGGACGAACCCATCAACAGTCCCAGTGAGATCAACTCGCGG
CATCCAGTGATCTTGGGTTTGCGAAACATCCTAAAGACAGCCAGCAGGCA
CGACATCACCACGCTGACCATTCCGGCTCTGCTGCGTCACGAGATGAGCG
AGGACATGACCGTCCAGTGGTGCATCAGAAGAGCAGAGCTGGTGTTTAAG
TGCGCCAAGGGGTTTATGATAGAATCTGCATCTTGGGGCGGAGCTGAGTT
AAGCACCTTGCAACTGCTACTGCCTGATGACATATCGGAAAGTTTGTTCA
CCACTCTGGCGGGAATGGTTCCCAGCGTTTTTCACGTGGCCAATCCCAAG
ATACTTGTGGACACCAGCAAGGCAAGCTTTCTAGACCAT
BO10071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9986-RA | 1608 | CG9986-PA | 1..1605 | 17..1621 | 8025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9986-RA | 2179 | CG9986-RA | 90..1694 | 17..1621 | 8025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28606411..28607710 | 204..1503 | 6500 | 100 | Plus |
| 3R | 32079331 | 3R | 28606168..28606354 | 17..203 | 935 | 100 | Plus |
| 3R | 32079331 | 3R | 28607768..28607887 | 1502..1621 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:31:39 has no hits.
BO10071.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:50 Download gff for
BO10071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 1..1608 | 17..1622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:40 Download gff for
BO10071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 26..1641 | 8..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:58 Download gff for
BO10071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 90..1694 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:50 Download gff for
BO10071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 26..1641 | 8..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:01 Download gff for
BO10071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 90..1694 | 17..1623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:01 Download gff for
BO10071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28606168..28606354 | 17..203 | 100 | -> | Plus |
| 3R | 28606411..28607710 | 204..1503 | 100 | -> | Plus |
| 3R | 28607770..28607887 | 1504..1623 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:58 Download gff for
BO10071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24431890..24432076 | 17..203 | 100 | -> | Plus |
| arm_3R | 24432133..24433432 | 204..1503 | 100 | -> | Plus |
| arm_3R | 24433492..24433609 | 1504..1623 | 98 | | Plus |
BO10071.pep Sequence
Translation from 16 to 1639
> BO10071.pep
MDSTATRTLPFVYKYKNHKGQDCESRLDITFPFDQENLEECITQLMAPNQ
MDPMMRYLDENIKLERELQKFVDTEQQNFLDDQAEKLLKQAANEEMDIEA
IVRDTERLYKEELLQFADRVGPSDADIFAQSFHRLVHSSSLEDILKRERA
YAKVVSDMTDLMDSEVETLNNSQQQEMDSQINQLDITTTSEDINNLLAQQ
YTTQNYVRKRYESELEAMMGHQKNEYRNWITSQVSQMFQVSPVATPLGNR
SSMFVSQQPSMEESFTIHLGSQLKHMHNIRILSANVTELCSPLHAEESLN
GLNMALGLYSSSLCGVVVLTPSIQAQANKNIIKNANKSTEFHFEQIDVQM
EKIEKQIKNLTTEDSSGSSTSNSSAEGSGTPSPTKKSVPRLKTGDFFITK
HSNLSQTHVIFHLISDEPINSPSEINSRHPVILGLRNILKTASRHDITTL
TIPALLRHEMSEDMTVQWCIRRAELVFKCAKGFMIESASWGGAELSTLQL
LLPDDISESLFTTLAGMVPSVFHVANPKILVDTSKASFLDH
BO10071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9986-PA | 535 | CG9986-PA | 1..535 | 1..535 | 2725 | 100 | Plus |
