Clone BO10072 Report

Search the DGRC for BO10072

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:100
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptSyx13-RA
Protein status:BO10072.pep: Imported from assembly
Sequenced Size:886

Clone Sequence Records

BO10072.3prime Sequence

883 bp (769 high quality bases) assembled on 2006-04-19

> BO10072.3prime
ATGGTCTAGAAAGCTTGCACTGTTCAGTTTGGCTACGATAACGCCAGTTA
CGATTAAACCTATTATCACAGCGATCACCAGGAGTATCAAGATCTTGCGC
CGGTAGCTCTGGCGACTCCTGGCCGCCTTGGCCAGTTCCGAGGTGCCATC
CTCAACGTTGGCGGCCGTCTGCTCAATACTGTTCTCGATGAAATCCATCT
GCTGCCCCTGATCGTGCACCAGTCCACTCAGCTGGGTCATGATCTGGTTG
ACATCGATGATGTCCGACTCTATTTGCTCGACCTGCCGCCGCCGATCGTC
GAGCATGTCGTGCTCCTGCTGGAGATGGGCCTGCTCCAAGCGCTGTTGCT
GCAGCAGCTCAGCACGGGCGTTGGTCTCCACCACCTGATCGGCAAATTGC
TGCGCCTGCTGCAGGGTCTGCCGCATGGCCGATGAGATGCGTCGCTGCAG
ATTGGAGTACTTCTCCACCACGCCATGGAACTCCCGGGTGAGCTTCTCCA
GCTGCAGCTTCTGCTGGCGATCTCCGTGCCGCACAACGGCCTGTAGCCTC
TGCAAGTCCTGACTGGTGGTCTGCACCCGGGCATTGCACTTGGTGTTGAT
GGTGTGCACCTTCTCCCGCAGATTTGGCTGCTCCTTGGATGTGCCAATCA
GTTTCAGCTGCTTCTCCAACTGCTTGGTGCTGCTGTGGATGGCAGTGATG
TTGTGGCCAATGTCCTCACTAAGAGACATGAATTCCGTCGGACTGAAGCC
GGACGAACCGCCGGCTGCCGCAAAGCTCACTTCGGGCGTTGAATCGGCCA
TCGCACCATAGTCCCGATGGGGGCCACCGCCTCCTCCGTTGCCACCGGGA
TTGTTCAGGGCCTGGACATGTCGACTGATAACT

BO10072.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11278-PA 855 Syx13-RA 8..852 863..19 4175 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
Syx13-RB 1568 CG11278-RB 215..1066 869..19 4205 99.6 Minus
Syx13-RA 1488 CG11278-RA 135..986 869..19 4205 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13044927..13045595 863..195 3330 99.9 Minus
3L 28110227 3L 13046216..13046392 195..19 870 99.4 Minus
Blast to na_te.dros performed 2015-02-03 15:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..6898 424..268 134 56.2 Minus

BO10072.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:27 Download gff for BO10072.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx13-PA 1..855 15..869 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:39:45 Download gff for BO10072.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11278-PA 1..855 15..869 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:18:07 Download gff for BO10072.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 135..991 11..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:46:00 Download gff for BO10072.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 135..991 11..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:46:00 Download gff for BO10072.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13044917..13045595 195..872 99 -> Minus
3L 13046217..13046397 11..194 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:18:07 Download gff for BO10072.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13038017..13038695 195..872 99 -> Minus
arm_3L 13039317..13039497 11..194 97   Minus

BO10072.5prime Sequence

884 bp (851 high quality bases) assembled on 2006-04-19

> BO10072.5prime
GAAGTTATCAGTCGACATGTCCAAGGCCTTGAACAATCCCGGTGGCAACG
GAGGAGGCGGTGGCCCCCATCGGGACTATGGTGCGATGGCCGATTCAACG
CCCGAAGTGAGCTTTGCGGCAGCCGGCGGTTCGTCCGGCTTCAGTCCGAC
GGAATTCATGTCTCTTAGTGAGGACATTGGCCACAACATCACTGCCATCC
ACAGCAGCACCAAGCAGTTGGAGAAGCAGCTGAAACTGATTGGCACATCC
AAGGAGCAGCCAAATCTGCGGGAGAAGGTGCACACCATCAACACCAAGTG
CAATGCCCGGGTGCAGACCACCAGTCAGGACTTGCAGAGGCTACAGGCCG
TTGTGCGGCACGGAGATCGCCAGCAGAAGCTGCAGCTGGAGAAGCTCACC
CGGGAGTTCCATGGCGTGGTGGAGAAGTACTCCAATCTGCAGCGACGCAT
CTCATCGGCCATGCGGCAGACCCTGCAGCAGGCGCAGCAATTTGCCGATC
AGGTGGTGGAGACCAACGCCCGTGCTGAGCTGCTGCAGCAACAGCGCTTG
GAGCAGGCCCATCTCCAGCAGGAGCACGACATGCTCGACGATCGGCGGCG
GCAGGTCGAGCAAATAGAGTCGGACATCATCGATGTCAACCAGATCATGA
CCCAGCTGAGTGGACTGGTGCACGATCAGGGGCAGCAGATGGATTTCATC
GAGAACAGTATTGAGCAGACGGCCGCCAACGTTGAGGATGGCACCTCGGA
ACTGGCCAAGGCGGCCAGGAGTCGCCAGAGCTACCGGCGCAAGATCTTGA
TACTCCTGGTGATCGCTGTGATAATAGGTTTAATCGTAACTGGCGTTATC
GTAGCCAAACTGAACAGTGCAAGCTTTCTAGACC

BO10072.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11278-PA 855 Syx13-RA 1..852 17..868 4235 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
Syx13-RB 1568 CG11278-RB 215..1066 17..868 4245 99.9 Plus
Syx13-RA 1488 CG11278-RA 135..986 17..868 4245 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13044920..13045595 17..692 3380 100 Plus
3L 28110227 3L 13046216..13046392 692..868 870 99.4 Plus
Blast to na_te.dros performed 2015-02-13 00:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..6898 463..619 134 56.2 Plus

BO10072.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:28 Download gff for BO10072.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx13-PA 1..855 17..872 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:39:46 Download gff for BO10072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11278-PA 1..855 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:57:12 Download gff for BO10072.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 135..991 17..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:07 Download gff for BO10072.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 135..991 17..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:07 Download gff for BO10072.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13044915..13045595 9..692 99 -> Plus
3L 13046217..13046397 693..876 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:57:12 Download gff for BO10072.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13038015..13038695 9..692 99 -> Plus
arm_3L 13039317..13039497 693..876 97   Plus

BO10072.complete Sequence

886 bp assembled on 2008-08-15

GenBank Submission: FJ631642

> BO10072.complete
GAAGTTATCAGTCGACATGTCCAAGGCCTTGAACAATCCCGGTGGCAACG
GAGGAGGCGGTGGCCCCCATCGGGACTATGGTGCGATGGCCGATTCAACG
CCCGAAGTGAGCTTTGCGGCAGCCGGCGGTTCGTCCGGCTTCAGTCCGAC
GGAATTCATGTCTCTTAGTGAGGACATTGGCCACAACATCACTGCCATCC
ACAGCAGCACCAAGCAGTTGGAGAAGCAGCTGAAACTGATTGGCACATCC
AAGGAGCAGCCAAATCTGCGGGAGAAGGTGCACACCATCAACACCAAGTG
CAATGCCCGGGTGCAGACCACCAGTCAGGACTTGCAGAGGCTACAGGCCG
TTGTGCGGCACGGAGATCGCCAGCAGAAGCTGCAGCTGGAGAAGCTCACC
CGGGAGTTCCATGGCGTGGTGGAGAAGTACTCCAATCTGCAGCGACGCAT
CTCATCGGCCATGCGGCAGACCCTGCAGCAGGCGCAGCAATTTGCCGATC
AGGTGGTGGAGACCAACGCCCGTGCTGAGCTGCTGCAGCAACAGCGCTTG
GAGCAGGCCCATCTCCAGCAGGAGCACGACATGCTCGACGATCGGCGGCG
GCAGGTCGAGCAAATAGAGTCGGACATCATCGATGTCAACCAGATCATGA
CCCAGCTGAGTGGACTGGTGCACGATCAGGGGCAGCAGATGGATTTCATC
GAGAACAGTATTGAGCAGACGGCCGCCAACGTTGAGGATGGCACCTCGGA
ACTGGCCAAGGCGGCCAGGAGTCGCCAGAGCTACCGGCGCAAGATCTTGA
TACTCCTGGTGATCGCTGTGATAATAGGTTTAATCGTAACTGGCGTTATC
GTAGCCAAACTGAACAGTGCAAGCTTTCTAGACCAT

BO10072.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Syx13-RB 855 CG11278-PB 1..852 17..868 4245 99.9 Plus
Syx13-RA 855 CG11278-PA 1..852 17..868 4245 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
Syx13-RB 1568 CG11278-RB 215..1066 17..868 4245 99.9 Plus
Syx13-RA 1488 CG11278-RA 135..986 17..868 4245 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13044920..13045595 17..692 3380 100 Plus
3L 28110227 3L 13046216..13046392 692..868 870 99.4 Plus
Blast to na_te.dros performed 2014-11-27 17:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..6898 463..619 134 56.2 Plus

BO10072.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:17 Download gff for BO10072.complete
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 133..989 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:58 Download gff for BO10072.complete
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 135..986 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:42 Download gff for BO10072.complete
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 133..984 17..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:12 Download gff for BO10072.complete
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 135..986 17..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:12 Download gff for BO10072.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13044920..13045595 17..692 100 -> Plus
3L 13046217..13046392 693..870 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:58 Download gff for BO10072.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13039317..13039492 693..870 98   Plus
arm_3L 13038020..13038695 17..692 100 -> Plus

BO10072.pep Sequence

Translation from 16 to 886

> BO10072.pep
MSKALNNPGGNGGGGGPHRDYGAMADSTPEVSFAAAGGSSGFSPTEFMSL
SEDIGHNITAIHSSTKQLEKQLKLIGTSKEQPNLREKVHTINTKCNARVQ
TTSQDLQRLQAVVRHGDRQQKLQLEKLTREFHGVVEKYSNLQRRISSAMR
QTLQQAQQFADQVVETNARAELLQQQRLEQAHLQQEHDMLDDRRRQVEQI
ESDIIDVNQIMTQLSGLVHDQGQQMDFIENSIEQTAANVEDGTSELAKAA
RSRQSYRRKILILLVIAVIIGLIVTGVIVAKLNSASFLDH

BO10072.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
Syx13-PB 284 CG11278-PB 1..284 1..284 1413 100 Plus
Syx13-PA 284 CG11278-PA 1..284 1..284 1413 100 Plus
Syx7-PB 282 CG5081-PB 11..274 35..274 271 25.8 Plus
Syx7-PA 282 CG5081-PA 11..274 35..274 271 25.8 Plus