Clone Sequence Records
BO10072.3prime Sequence
883 bp (769 high quality bases) assembled on 2006-04-19
> BO10072.3prime
ATGGTCTAGAAAGCTTGCACTGTTCAGTTTGGCTACGATAACGCCAGTTA
CGATTAAACCTATTATCACAGCGATCACCAGGAGTATCAAGATCTTGCGC
CGGTAGCTCTGGCGACTCCTGGCCGCCTTGGCCAGTTCCGAGGTGCCATC
CTCAACGTTGGCGGCCGTCTGCTCAATACTGTTCTCGATGAAATCCATCT
GCTGCCCCTGATCGTGCACCAGTCCACTCAGCTGGGTCATGATCTGGTTG
ACATCGATGATGTCCGACTCTATTTGCTCGACCTGCCGCCGCCGATCGTC
GAGCATGTCGTGCTCCTGCTGGAGATGGGCCTGCTCCAAGCGCTGTTGCT
GCAGCAGCTCAGCACGGGCGTTGGTCTCCACCACCTGATCGGCAAATTGC
TGCGCCTGCTGCAGGGTCTGCCGCATGGCCGATGAGATGCGTCGCTGCAG
ATTGGAGTACTTCTCCACCACGCCATGGAACTCCCGGGTGAGCTTCTCCA
GCTGCAGCTTCTGCTGGCGATCTCCGTGCCGCACAACGGCCTGTAGCCTC
TGCAAGTCCTGACTGGTGGTCTGCACCCGGGCATTGCACTTGGTGTTGAT
GGTGTGCACCTTCTCCCGCAGATTTGGCTGCTCCTTGGATGTGCCAATCA
GTTTCAGCTGCTTCTCCAACTGCTTGGTGCTGCTGTGGATGGCAGTGATG
TTGTGGCCAATGTCCTCACTAAGAGACATGAATTCCGTCGGACTGAAGCC
GGACGAACCGCCGGCTGCCGCAAAGCTCACTTCGGGCGTTGAATCGGCCA
TCGCACCATAGTCCCGATGGGGGCCACCGCCTCCTCCGTTGCCACCGGGA
TTGTTCAGGGCCTGGACATGTCGACTGATAACT
BO10072.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11278-PA | 855 | Syx13-RA | 8..852 | 863..19 | 4175 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx13-RB | 1568 | CG11278-RB | 215..1066 | 869..19 | 4205 | 99.6 | Minus |
Syx13-RA | 1488 | CG11278-RA | 135..986 | 869..19 | 4205 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13044927..13045595 | 863..195 | 3330 | 99.9 | Minus |
3L | 28110227 | 3L | 13046216..13046392 | 195..19 | 870 | 99.4 | Minus |
Blast to na_te.dros performed 2015-02-03 15:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6898 | 424..268 | 134 | 56.2 | Minus |
BO10072.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:27 Download gff for
BO10072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx13-PA | 1..855 | 15..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:39:45 Download gff for
BO10072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11278-PA | 1..855 | 15..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:18:07 Download gff for
BO10072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx13-RA | 135..991 | 11..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:46:00 Download gff for
BO10072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx13-RA | 135..991 | 11..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:46:00 Download gff for
BO10072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13044917..13045595 | 195..872 | 99 | -> | Minus |
3L | 13046217..13046397 | 11..194 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:18:07 Download gff for
BO10072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13038017..13038695 | 195..872 | 99 | -> | Minus |
arm_3L | 13039317..13039497 | 11..194 | 97 | | Minus |
BO10072.5prime Sequence
884 bp (851 high quality bases) assembled on 2006-04-19
> BO10072.5prime
GAAGTTATCAGTCGACATGTCCAAGGCCTTGAACAATCCCGGTGGCAACG
GAGGAGGCGGTGGCCCCCATCGGGACTATGGTGCGATGGCCGATTCAACG
CCCGAAGTGAGCTTTGCGGCAGCCGGCGGTTCGTCCGGCTTCAGTCCGAC
GGAATTCATGTCTCTTAGTGAGGACATTGGCCACAACATCACTGCCATCC
ACAGCAGCACCAAGCAGTTGGAGAAGCAGCTGAAACTGATTGGCACATCC
AAGGAGCAGCCAAATCTGCGGGAGAAGGTGCACACCATCAACACCAAGTG
CAATGCCCGGGTGCAGACCACCAGTCAGGACTTGCAGAGGCTACAGGCCG
TTGTGCGGCACGGAGATCGCCAGCAGAAGCTGCAGCTGGAGAAGCTCACC
CGGGAGTTCCATGGCGTGGTGGAGAAGTACTCCAATCTGCAGCGACGCAT
CTCATCGGCCATGCGGCAGACCCTGCAGCAGGCGCAGCAATTTGCCGATC
AGGTGGTGGAGACCAACGCCCGTGCTGAGCTGCTGCAGCAACAGCGCTTG
GAGCAGGCCCATCTCCAGCAGGAGCACGACATGCTCGACGATCGGCGGCG
GCAGGTCGAGCAAATAGAGTCGGACATCATCGATGTCAACCAGATCATGA
CCCAGCTGAGTGGACTGGTGCACGATCAGGGGCAGCAGATGGATTTCATC
GAGAACAGTATTGAGCAGACGGCCGCCAACGTTGAGGATGGCACCTCGGA
ACTGGCCAAGGCGGCCAGGAGTCGCCAGAGCTACCGGCGCAAGATCTTGA
TACTCCTGGTGATCGCTGTGATAATAGGTTTAATCGTAACTGGCGTTATC
GTAGCCAAACTGAACAGTGCAAGCTTTCTAGACC
BO10072.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11278-PA | 855 | Syx13-RA | 1..852 | 17..868 | 4235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx13-RB | 1568 | CG11278-RB | 215..1066 | 17..868 | 4245 | 99.9 | Plus |
Syx13-RA | 1488 | CG11278-RA | 135..986 | 17..868 | 4245 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13044920..13045595 | 17..692 | 3380 | 100 | Plus |
3L | 28110227 | 3L | 13046216..13046392 | 692..868 | 870 | 99.4 | Plus |
Blast to na_te.dros performed 2015-02-13 00:16:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6898 | 463..619 | 134 | 56.2 | Plus |
BO10072.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:28 Download gff for
BO10072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx13-PA | 1..855 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:39:46 Download gff for
BO10072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11278-PA | 1..855 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:57:12 Download gff for
BO10072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx13-RA | 135..991 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:07 Download gff for
BO10072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx13-RA | 135..991 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:07 Download gff for
BO10072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13044915..13045595 | 9..692 | 99 | -> | Plus |
3L | 13046217..13046397 | 693..876 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:57:12 Download gff for
BO10072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13038015..13038695 | 9..692 | 99 | -> | Plus |
arm_3L | 13039317..13039497 | 693..876 | 97 | | Plus |
BO10072.complete Sequence
886 bp assembled on 2008-08-15
GenBank Submission: FJ631642
> BO10072.complete
GAAGTTATCAGTCGACATGTCCAAGGCCTTGAACAATCCCGGTGGCAACG
GAGGAGGCGGTGGCCCCCATCGGGACTATGGTGCGATGGCCGATTCAACG
CCCGAAGTGAGCTTTGCGGCAGCCGGCGGTTCGTCCGGCTTCAGTCCGAC
GGAATTCATGTCTCTTAGTGAGGACATTGGCCACAACATCACTGCCATCC
ACAGCAGCACCAAGCAGTTGGAGAAGCAGCTGAAACTGATTGGCACATCC
AAGGAGCAGCCAAATCTGCGGGAGAAGGTGCACACCATCAACACCAAGTG
CAATGCCCGGGTGCAGACCACCAGTCAGGACTTGCAGAGGCTACAGGCCG
TTGTGCGGCACGGAGATCGCCAGCAGAAGCTGCAGCTGGAGAAGCTCACC
CGGGAGTTCCATGGCGTGGTGGAGAAGTACTCCAATCTGCAGCGACGCAT
CTCATCGGCCATGCGGCAGACCCTGCAGCAGGCGCAGCAATTTGCCGATC
AGGTGGTGGAGACCAACGCCCGTGCTGAGCTGCTGCAGCAACAGCGCTTG
GAGCAGGCCCATCTCCAGCAGGAGCACGACATGCTCGACGATCGGCGGCG
GCAGGTCGAGCAAATAGAGTCGGACATCATCGATGTCAACCAGATCATGA
CCCAGCTGAGTGGACTGGTGCACGATCAGGGGCAGCAGATGGATTTCATC
GAGAACAGTATTGAGCAGACGGCCGCCAACGTTGAGGATGGCACCTCGGA
ACTGGCCAAGGCGGCCAGGAGTCGCCAGAGCTACCGGCGCAAGATCTTGA
TACTCCTGGTGATCGCTGTGATAATAGGTTTAATCGTAACTGGCGTTATC
GTAGCCAAACTGAACAGTGCAAGCTTTCTAGACCAT
BO10072.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx13-RB | 855 | CG11278-PB | 1..852 | 17..868 | 4245 | 99.9 | Plus |
Syx13-RA | 855 | CG11278-PA | 1..852 | 17..868 | 4245 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx13-RB | 1568 | CG11278-RB | 215..1066 | 17..868 | 4245 | 99.9 | Plus |
Syx13-RA | 1488 | CG11278-RA | 135..986 | 17..868 | 4245 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13044920..13045595 | 17..692 | 3380 | 100 | Plus |
3L | 28110227 | 3L | 13046216..13046392 | 692..868 | 870 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-27 17:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6898 | 463..619 | 134 | 56.2 | Plus |
BO10072.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:17 Download gff for
BO10072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx13-RA | 133..989 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:58 Download gff for
BO10072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx13-RA | 135..986 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:42 Download gff for
BO10072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx13-RA | 133..984 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:12 Download gff for
BO10072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx13-RA | 135..986 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:12 Download gff for
BO10072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13044920..13045595 | 17..692 | 100 | -> | Plus |
3L | 13046217..13046392 | 693..870 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:58 Download gff for
BO10072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13039317..13039492 | 693..870 | 98 | | Plus |
arm_3L | 13038020..13038695 | 17..692 | 100 | -> | Plus |
BO10072.pep Sequence
Translation from 16 to 886
> BO10072.pep
MSKALNNPGGNGGGGGPHRDYGAMADSTPEVSFAAAGGSSGFSPTEFMSL
SEDIGHNITAIHSSTKQLEKQLKLIGTSKEQPNLREKVHTINTKCNARVQ
TTSQDLQRLQAVVRHGDRQQKLQLEKLTREFHGVVEKYSNLQRRISSAMR
QTLQQAQQFADQVVETNARAELLQQQRLEQAHLQQEHDMLDDRRRQVEQI
ESDIIDVNQIMTQLSGLVHDQGQQMDFIENSIEQTAANVEDGTSELAKAA
RSRQSYRRKILILLVIAVIIGLIVTGVIVAKLNSASFLDH
BO10072.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx13-PB | 284 | CG11278-PB | 1..284 | 1..284 | 1413 | 100 | Plus |
Syx13-PA | 284 | CG11278-PA | 1..284 | 1..284 | 1413 | 100 | Plus |
Syx7-PB | 282 | CG5081-PB | 11..274 | 35..274 | 271 | 25.8 | Plus |
Syx7-PA | 282 | CG5081-PA | 11..274 | 35..274 | 271 | 25.8 | Plus |