Clone Sequence Records
BO10086.3prime Sequence
925 bp (785 high quality bases) assembled on 2006-04-19
> BO10086.3prime
ATGGTCTAGAAAGCTTGCGGACCAGCCGCCGGTAAGTTTGTGGAAAAGCT
CCTCGTTCAGGGTCTGGTTGGTGTCCTTGGATCGCATGGACATGAAAATG
TAACCACCGATGAACTCGTGCACCACTTTACAGTCGGCTGAGTGGCAGGA
GAAGACCACATTCTCGTCTTCAAACTGAATCATCATGCACTTTATGTTCC
AGTTGACGTTCCACGCCTTCATGGTGTTATATCGCCAGGTCTTGATGTGA
TCTCCCGAACTCAGATCCATGCGCATAATGCGGTTGTGGGCCACGCCGAG
CAGCTCCTCCTTCCGATGCCCGTCGAACTTAATGATGAACAGGCTTACTC
CAAAGTCAGGTAACGAACGCCATGCCTGGATGTACTTCAGTTTTGAATCT
AAAGCATTCAGCTCCCGAACGTTGGCATGTGCTTCGAGGATCCGCTGGAC
TGCCTTGTTCGACAACTTGCGGATGATCTTGGGCGACAGATAATCAACTG
CTTCCACAGAGCGAGGATCGATGTTTACATGAACTCCGTGTGCGGGTCGC
TGCATCTGCAGTAGCGAGAGTATGCTGTCCACTTCACTCTCGTACGAGCT
ATCCGCCAGGGATCTTCCCTTGGCCGCCAAACGACAAGCAGCCATCCACT
TGGCGTACTGCTGCTCGTTCTCGCAGCGCACCCACACCTCACTGTTGATA
CCGTGGCCACCATCAGGAGAGACCTCCAGCCGGATAGCATACTTTCCCTG
GGACAGGTTTACATCCGGAGTTACTTCGCAGCCCTTCAGGTTAATGCTTA
TGGCAGGCGCAACACGTCGCGAATCTTCGGCGTTCTTGAACAGATGCAAA
TGCAGATCCCGATAGGTGAAGTAGTAGCGCTTATAGCCGCGCAGCGTGAA
TCTTTGCGGCTTCAAGTAACGCAAA
BO10086.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7729-PA | 2148 | Fit2-RA | 1239..2145 | 925..19 | 4535 | 100 | Minus |
| CG14991-PA | 2127 | Fit1-RA | 2005..2123 | 138..20 | 295 | 89.9 | Minus |
| CG14991-PB | 2127 | Fit1-RB | 2005..2123 | 138..20 | 295 | 89.9 | Minus |
| CG14991-PA | 2127 | Fit1-RA | 1447..1526 | 696..617 | 150 | 87.5 | Minus |
| CG14991-PB | 2127 | Fit1-RB | 1447..1526 | 696..617 | 150 | 87.5 | Minus |
| CG14991-PA | 2127 | Fit1-RA | 1891..1968 | 252..175 | 140 | 87.1 | Minus |
| CG14991-PB | 2127 | Fit1-RB | 1891..1968 | 252..175 | 140 | 87.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit2-RA | 2790 | CG7729-RA | 1569..2475 | 925..19 | 4535 | 100 | Minus |
| Fit1-RB | 3469 | CG14991-RB | 1843..2735 | 912..20 | 1365 | 77.4 | Minus |
| Fit1-RA | 3119 | CG14991-RA | 1927..2819 | 912..20 | 1365 | 77.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17025896..17026802 | 925..19 | 4535 | 100 | Minus |
| 3L | 28110227 | 3L | 4105490..4106382 | 912..20 | 1315 | 76.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:34:11 has no hits.
BO10086.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:48 Download gff for
BO10086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-PA | 1242..2148 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:13 Download gff for
BO10086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7729-PA | 1242..2148 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:13:03 Download gff for
BO10086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 1572..2475 | 19..922 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:45:55 Download gff for
BO10086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 1572..2475 | 19..922 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:45:55 Download gff for
BO10086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17025899..17026802 | 19..922 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:13:03 Download gff for
BO10086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17018999..17019902 | 19..922 | 100 | | Minus |
BO10086.5prime Sequence
866 bp (742 high quality bases) assembled on 2006-04-19
> BO10086.5prime
GAAGTTATCAGTCGACATGATCCACGTCGGCGAGAACTCGTGGAATCTGC
GGATCTTCATCACGGATCTGGCGCTGGAGAAGACGATGCGCGTGCGCGGT
GACCAGCACATTGGGGGCATTATGCTGCAACTGGTGGATCCGGAGAATCC
CAAGGACTGGTCGGATCATGCTCTGTGGTGGCCAGCGCGGAATGTTTGGC
TCAGCCGAACCAAACTTACCCTGGATCAGTGCGGTGTCCAGGCGGATAGC
CTTCTGCACTTCACGCCCATGCACAAGATACTGCGGGTGCAGCTGCCGGA
TTTGAGGTACCTGGACTCCCGGGTGGATTACTCCGTAAAGACGTTCTCGG
CGGTGGTTAATCTATGCAAGCAGTTGGATATCCGCTATCCGGAGGAGTTG
TCCCTGTGCAAACCACTGGAAGCGGAGCACCTGAAGCGTAACTTCGCCCA
GGTGCCGCATCAGAAGCGAGTGCCAATCGCTGAACCAGATGGCACCACTT
ACCTGCAGCCTGCTGCGGACACCAACTCATTTGTGCCCATCAGCACGTCG
TTTCATGGAGAAGGCGGAAGCACGGGCAGTCTGGACAAGCCCTCTGCACC
GGGATCCTTCTTCTGTGCTCCTCTGTCGCCGCACAATCACCGAGCGCGCT
CGCCAGTGCGCACCGTATCACCTTTTCCAGGCACCTGGAAACAGAGCCAG
CTTGGCTATGCCACGTACGATTCGAGCTCCTCAAGTCTTGGCGATTTCCA
GGAGAATTTGGCCAGCTCTCCGCCCACCCCATGCGCGGATGTGCGAGCTC
TTCAGCTGCGCCCCAAGTCGCTGGTGGAGAAGGCTCGTCTGAATGTGGGC
TGGCTAGATTCCTCGC
BO10086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7729-PA | 2148 | Fit2-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
| CG14991-PA | 2127 | Fit1-RA | 236..276 | 252..292 | 155 | 95.1 | Plus |
| CG14991-PB | 2127 | Fit1-RB | 236..276 | 252..292 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:19:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit2-RA | 2790 | CG7729-RA | 330..1180 | 16..866 | 4255 | 100 | Plus |
| Fit1-RB | 3469 | CG14991-RB | 613..1135 | 17..542 | 620 | 75.4 | Plus |
| Fit1-RA | 3119 | CG14991-RA | 697..1219 | 17..542 | 620 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17024657..17025507 | 16..866 | 4255 | 100 | Plus |
| 3L | 28110227 | 3L | 4104260..4104702 | 17..459 | 610 | 75.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:19:08 has no hits.
BO10086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:49 Download gff for
BO10086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:14 Download gff for
BO10086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7729-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:29:06 Download gff for
BO10086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 324..1180 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:41:15 Download gff for
BO10086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 324..1180 | 9..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:41:15 Download gff for
BO10086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17024651..17025507 | 9..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:29:06 Download gff for
BO10086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17017751..17018607 | 9..866 | 99 | | Plus |
BO10086.complete Sequence
2179 bp (2179 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631643
> BO10086.complete
GAAGTTATCAGTCGACATGATCCACGTCGGCGAGAACTCGTGGAATCTGC
GGATCTTCATCACGGATCTGGCGCTGGAGAAGACGATGCGCGTGCGCGGT
GACCAGCACATTGGGGGCATTATGCTGCAACTGGTGGATCCGGAGAATCC
CAAGGACTGGTCGGATCATGCTCTGTGGTGGCCAGCGCGGAATGTTTGGC
TCAGCCGAACCAAACTTACCCTGGATCAGTGCGGTGTCCAGGCGGATAGC
CTTCTGCACTTCACGCCCATGCACAAGATACTGCGGGTGCAGCTGCCGGA
TTTGAGGTACCTGGACTCCCGGGTGGATTACTCCGTAAAGACGTTCTCGG
CGGTGGTTAATCTATGCAAGCAGTTGGATATCCGCTATCCGGAGGAGTTG
TCCCTGTGCAAACCACTGGAAGCGGAGCACCTGAAGCGTAACTTCGCCCA
GGTGCCGCATCAGAAGCGAGTGCCAATCGCTGAACCAGATGGCACCACTT
ACCTGCAGCCTGCTGCGGACACCAACTCATTTGTGCCCATCAGCACGTCG
TTTCATGGAGAAGGCGGAAGCACGGGCAGTCTGGACAAGCCCTCTGCACC
GGGATCCTTCTTCTGTGCTCCTCTGTCGCCGCACAATCACCGAGCGCGCT
CGCCAGTGCGCACCGTATCACCTTTTCCAGGCACCTGGAAACAGAGCCAG
CTTGGCTATGCCACGTACGATTCGAGCTCCTCAAGTCTTGGCGATTTCCA
GGAGAATTTGGCCAGCTCTCCGCCCACCCCATGCGCGGATGTGCGAGCTC
TTCAGCTGCGCCCCAAGTCGCTGGTGGAGAAGGCTCGTCTGAATGTGGGC
TGGCTAGATTCCTCGCTGTCCATCATGGAACAGGGCATACGCGAGTACGA
CACGCTGTGCCTGCGCTTCAAGTATTTCACTTTTTTCGATCTAAATCCCA
AGTGCGACCAGGTGCGCATCAATCAGCTGTACGAGCAGGCCAAGTGGAGT
GTTCTGAACGAGGAGTTGGATTGCACAGAGGAGGAGAGCCTTATGTTTGC
CGCCCTCCAGTTCCAGGTGAACCATCACGTAGATCATACACCCCAGGGTG
CAGCAGTGGACTCGGGCATTGAAACTTCCAGTCAGGAGAATGACAACGAA
GACGAGATTGATTCGGCACTGAAAGAGCTACAGATTACGCTGGAGGGACC
GGACTACGGCGGAGACTCGCGGAATATTACACGCATACCAGAGCTCTCTG
ACTATTTGCGTTACTTGAAGCCGCAAAGATTCACGCTGCGCGGCTATAAG
CGCTACTACTTCACCTATCGGGATCTGCATTTGCATCTGTTCAAGAACGC
CGAAGATTCGCGACGTGTTGCGCCTGCCATAAGCATTAACCTGAAGGGCT
GCGAAGTAACTCCGGATGTAAACCTGTCCCAGGGAAAGTATGCTATCCGG
CTGGAGGTCTCTCCTGATGGTGGCCACGGTATCAACAGTGAGGTGTGGGT
GCGCTGCGAGAACGAGCAGCAGTACGCCAAGTGGATGGCTGCTTGTCGTT
TGGCGGCCAAGGGAAGATCCCTGGCGGATAGCTCGTACGAGAGTGAAGTG
GACAGCATACTCTCGCTACTGCAGATGCAGCGACCCGCACACGGAGTTCA
TGTAAACATCGATCCTCGCTCTGTGGAAGCAGTTGATTATCTGTCGCCCA
AGATCATCCGCAAGTTGTCGAACAAGGCAGTCCAGCGGATCCTCGAAGCA
CATGCCAACGTTCGGGAGCTGAATGCTTTAGATTCAAAACTGAAGTACAT
CCAGGCATGGCGTTCGTTACCTGACTTTGGAGTAAGCCTGTTCATCATTA
AGTTCGACGGGCATCGGAAGGAGGAGCTGCTCGGCGTGGCCCACAACCGC
ATTATGCGCATGGATCTGAGTTCGGGAGATCACATCAAGACCTGGCGATA
TAACACCATGAAGGCGTGGAACGTCAACTGGAACATAAAGTGCATGATGA
TTCAGTTTGAAGACGAGAATGTGGTCTTCTCCTGCCACTCAGCCGACTGT
AAAGTGGTGCACGAGTTCATCGGTGGTTACATTTTCATGTCCATGCGATC
CAAGGACACCAACCAGACCCTGAACGAGGAGCTTTTCCACAAACTTACCG
GCGGCTGGTCCGCAAGCTTTCTAGACCAT
BO10086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit2-RA | 2148 | CG7729-PA | 1..2145 | 17..2161 | 10725 | 100 | Plus |
| Fit1-RB | 2127 | CG14991-PB | 781..2123 | 812..2160 | 1850 | 76 | Plus |
| Fit1-RA | 2127 | CG14991-PA | 781..2123 | 812..2160 | 1850 | 76 | Plus |
| Fit1-RB | 2127 | CG14991-PB | 1..443 | 17..459 | 610 | 75.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit2-RA | 2790 | CG7729-RA | 330..2475 | 16..2161 | 10730 | 100 | Plus |
| Fit1-RB | 3469 | CG14991-RB | 1393..2735 | 812..2160 | 1850 | 76 | Plus |
| Fit1-RA | 3119 | CG14991-RA | 1477..2819 | 812..2160 | 1850 | 76 | Plus |
| Fit1-RB | 3469 | CG14991-RB | 613..1055 | 17..459 | 610 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17024657..17026802 | 16..2161 | 10730 | 100 | Plus |
| 3L | 28110227 | 3L | 4105040..4106382 | 812..2160 | 1850 | 76 | Plus |
| 3L | 28110227 | 3L | 4104260..4104702 | 17..459 | 610 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:33:55 has no hits.
BO10086.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:33 Download gff for
BO10086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 1..2148 | 17..2162 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:10 Download gff for
BO10086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 322..2473 | 9..2161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:07 Download gff for
BO10086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 331..2475 | 17..2163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:33 Download gff for
BO10086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 322..2473 | 9..2161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:54 Download gff for
BO10086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 331..2475 | 17..2163 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:54 Download gff for
BO10086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17024658..17026802 | 17..2163 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:07 Download gff for
BO10086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17017758..17019902 | 17..2163 | 99 | | Plus |
BO10086.pep Sequence
Translation from 16 to 2179
> BO10086.pep
MIHVGENSWNLRIFITDLALEKTMRVRGDQHIGGIMLQLVDPENPKDWSD
HALWWPARNVWLSRTKLTLDQCGVQADSLLHFTPMHKILRVQLPDLRYLD
SRVDYSVKTFSAVVNLCKQLDIRYPEELSLCKPLEAEHLKRNFAQVPHQK
RVPIAEPDGTTYLQPAADTNSFVPISTSFHGEGGSTGSLDKPSAPGSFFC
APLSPHNHRARSPVRTVSPFPGTWKQSQLGYATYDSSSSSLGDFQENLAS
SPPTPCADVRALQLRPKSLVEKARLNVGWLDSSLSIMEQGIREYDTLCLR
FKYFTFFDLNPKCDQVRINQLYEQAKWSVLNEELDCTEEESLMFAALQFQ
VNHHVDHTPQGAAVDSGIETSSQENDNEDEIDSALKELQITLEGPDYGGD
SRNITRIPELSDYLRYLKPQRFTLRGYKRYYFTYRDLHLHLFKNAEDSRR
VAPAISINLKGCEVTPDVNLSQGKYAIRLEVSPDGGHGINSEVWVRCENE
QQYAKWMAACRLAAKGRSLADSSYESEVDSILSLLQMQRPAHGVHVNIDP
RSVEAVDYLSPKIIRKLSNKAVQRILEAHANVRELNALDSKLKYIQAWRS
LPDFGVSLFIIKFDGHRKEELLGVAHNRIMRMDLSSGDHIKTWRYNTMKA
WNVNWNIKCMMIQFEDENVVFSCHSADCKVVHEFIGGYIFMSMRSKDTNQ
TLNEELFHKLTGGWSASFLDH
BO10086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit2-PA | 715 | CG7729-PA | 1..715 | 1..715 | 3799 | 100 | Plus |
| Fit1-PB | 708 | CG14991-PB | 1..708 | 1..715 | 2873 | 75.6 | Plus |
| Fit1-PA | 708 | CG14991-PA | 1..708 | 1..715 | 2873 | 75.6 | Plus |
