Clone BO10088 Report

Search the DGRC for BO10088

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:100
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG32756-RA
Protein status:BO10088.pep: validated full length
Sequenced Size:1411

Clone Sequence Records

BO10088.3prime Sequence

903 bp (805 high quality bases) assembled on 2006-04-19

> BO10088.3prime
ATGGTCTAGAAAGCTTGCTTTTTTCTCTAGATTATTGATCGCTTCTGCGA
CGCGACCAGTTGAGTAAATCAGTGCGGCTTTGATCTCTTCCAGCTCAATT
TGATGAATTACATCCAAATTCCCCTCGGATATTCCGACTTCGGGTTCTTG
AGTGAATGCCGGGGGGTAATCGTAAAAATCATTAATAGAATCCAAAGCGT
TCGATGCCTCCCTAGTGACCTCCTCATCATCAGAAGAAGAATTCTCATCA
TTAAAAGAAGCATCCTCATATTTAGAGGCATCATCATCTTTAGAAGAAGC
ATCCTCATCTTTAGAAGAAGCATCCTCATATTTAGAAGAAGTATACGCAT
CTTTAGAAGAAGCATCCTCATCTTCAGAAGAAGCATACTGTTCCTGAGAT
GCAAGTTCATATACACCATTTCCGACGGTTGGATTAAATTTGGTTAGTTG
TCGGCCAGACCATCCTTGGGAAAGCCCCGAAGATGTGGATGACTCTTCGT
CATCATCAGTGAGATCATTCTTGGTGTCCATTGGCGCTAGCTCTACTTTT
AAGATTACATTTACGTTTGTCTCTTGGGAACTCTGCGAGCTTTTGTACTC
GACAAGCGGATTGGAGCGGCGCTGCATTACCTTGCGCTCCATATGATTGG
TATTGATTTCAAGAGCCTTGCGCTTCCTAATGCGAGGAGCTTCTTTTGGG
CTTGATGCCTTCGAAGAAGCAAAGTAGCCGTTTGACGAAGAATAGGGCGC
GACATCCCGTGCCCATGGCGAAGAAAGCGATGTCCAATTAGGCGATGGCT
TATCAGCAAAAAAAGTACTCTGCGCCTTCTGGTAGGCAGCGGAACAGTCC
AGCAATTGCTTGTGCTCATTCATAAAAGCCTCGAGATCAAAGGGCTGGGT
TTC

BO10088.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG32756-PA 1380 CG32756-RA 493..1377 903..19 4425 100 Minus
CG12728-PA 1434 CG12728-RA 493..938 903..458 2155 99.3 Minus
CG12728-PA 1434 CG12728-RA 944..1109 449..284 705 96.9 Minus
CG12728-PA 1434 CG12728-RA 1070..1178 386..278 320 91.7 Minus
CG12728-PA 1434 CG12728-RA 1052..1151 383..284 225 89 Minus
CG12728-PA 1434 CG12728-RA 1028..1136 386..278 220 88 Minus
CG12728-PA 1434 CG12728-RA 1007..1094 365..278 215 89.7 Minus
CG12728-PA 1434 CG12728-RA 1115..1185 383..313 205 91.5 Minus
CG12728-PA 1434 CG12728-RA 1141..1223 276..194 190 89.1 Minus
CG12728-PA 1434 CG12728-RA 1141..1185 336..292 175 95.5 Minus
CG12728-PA 1434 CG12728-RA 1344..1381 94..57 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG32756-RB 2397 CG32756-RB 572..1456 903..19 4425 100 Minus
CG32756-RA 1895 CG32756-RA 572..1456 903..19 4425 100 Minus
CG12728-RB 2374 CG12728-RB 570..1478 903..37 3010 89.5 Minus
CG32756-RB 2397 CG32756-RB 1087..1191 346..245 295 86.7 Minus
CG32756-RB 2397 CG32756-RB 1089..1191 323..224 295 86.4 Minus
CG32756-RB 2397 CG32756-RB 1129..1230 388..284 295 86.7 Minus
CG32756-RB 2397 CG32756-RB 1152..1251 386..284 295 86.4 Minus
CG32756-RA 1895 CG32756-RA 1087..1191 346..245 295 86.7 Minus
CG32756-RA 1895 CG32756-RA 1089..1191 323..224 295 86.4 Minus
CG32756-RA 1895 CG32756-RA 1129..1230 388..284 295 86.7 Minus
CG32756-RA 1895 CG32756-RA 1152..1251 386..284 295 86.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5946753..5947412 678..19 3300 100 Minus
X 23542271 X 5943671..5944128 678..221 1815 93.9 Minus
X 23542271 X 5946467..5946694 903..676 1140 100 Minus
X 23542271 X 5943385..5943612 903..676 1110 99.1 Minus
X 23542271 X 5944023..5944135 386..274 415 91.2 Minus
X 23542271 X 5944005..5944354 383..37 390 75 Minus
X 23542271 X 5943958..5944086 346..221 325 85.3 Minus
X 23542271 X 5944044..5944146 386..284 320 87.4 Minus
X 23542271 X 5944068..5944146 383..305 275 89.9 Minus
X 23542271 X 5947085..5947186 388..284 265 85.7 Minus
X 23542271 X 5947043..5947147 346..245 265 85.7 Minus
X 23542271 X 5944086..5944146 386..326 185 86.9 Minus
Blast to na_te.dros performed 2015-02-11 11:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
invader1 4032 invader1 INVADER 4032bp 409..437 488..516 109 86.2 Plus

BO10088.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:52 Download gff for BO10088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32756-PA 493..1380 15..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:19 Download gff for BO10088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32756-PA 493..1380 15..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:18:38 Download gff for BO10088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 572..1462 10..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:04:50 Download gff for BO10088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 572..1462 10..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:04:50 Download gff for BO10088.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5946467..5946693 677..903 100 -> Minus
X 5946755..5947418 10..676 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:18:38 Download gff for BO10088.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5840500..5840726 677..903 100 -> Minus
arm_X 5840788..5841451 10..676 99   Minus

BO10088.5prime Sequence

834 bp (778 high quality bases) assembled on 2006-04-19

> BO10088.5prime
GAAGTTATCAGTCGACATGCTATTGAAAGTAGTGAATATAAATGGCTTGC
AGCACCTGTTCGCCTGCACTGAGGGGCAGCATGATGAAACCCTAACTATT
CACGTTTTCCGTCCTCGCGAGAAGTGGACTTACTCCGAGACTTTGATGAA
ACGCGATTACCAGCAGCGTTTGAAAACGCTCAACGCGCGTGTGAAGTTTC
CCGAGGAATTGGTGCGCCAGGTCCTGCTCAACAAGGATCCATTGCATGTC
GAACAGGATTACCAGCACCCATTGAACGTCCTGAAACTGAAGTATGCCAT
GGCGAATTTCAAAGTTTTCCTCAAGTGGGAATGGCACCTGAGACCCATGG
ATGCCGCACAGTTGTATAGCCAAATGTTCTTGAACACAATGTCCACGGCT
TTGGGACTACGGGCTCAGATACCCCTTCTGCTAGGGATTATCCATGCCAA
GGACAAGGAGCTGAACCAGTATCGCACCGAGGGATGCCAGCTGCGCAGAG
TGACCGTGGAAACCCAGCCCTTTGATCTCGAGGCTTTTATGAATGAGCAC
AAGCAATTGCTGGACTGTTCCGCTGCCTACCAGAAGGCGCAGAGTACTTT
TTTTGCTGATAAGCCATCGCCTAATTGGACATCGCTTTCTTCGCCATGGG
CACGGGATGTCGCGCCCTATTCTTCGTCAAACGGCTACTTTGCTTCTTCG
AAGGCATCAAGCCCAAAAGAAGCTCCTCGCATTAGGAAGCGCAAGGCTCT
TGAAATCAATACCAATCATATGGAGCGCAAGGTAATGCAGCGCCGCTCCA
ATCCGCTTGTCGAGTACAAAAGCTCGCAGAGTTC

BO10088.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG32756-PA 1380 CG32756-RA 1..818 17..834 4090 100 Plus
CG12728-PA 1434 CG12728-RA 1..818 17..834 3965 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32756-RB 2397 CG32756-RB 80..897 17..834 4090 100 Plus
CG32756-RA 1895 CG32756-RA 80..897 17..834 4090 100 Plus
CG12728-RB 2374 CG12728-RB 78..895 17..834 4015 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5946457..5946694 499..736 1190 100 Plus
X 23542271 X 5943375..5943612 499..736 1145 98.7 Plus
X 23542271 X 5942903..5943088 176..361 930 100 Plus
X 23542271 X 5945981..5946166 176..361 930 100 Plus
X 23542271 X 5942683..5942841 17..175 795 100 Plus
X 23542271 X 5945761..5945919 17..175 795 100 Plus
X 23542271 X 5946231..5946371 360..500 705 100 Plus
X 23542271 X 5943153..5943290 360..497 675 99.3 Plus
X 23542271 X 5943671..5943771 734..834 505 100 Plus
X 23542271 X 5946753..5946853 734..834 505 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:37:32 has no hits.

BO10088.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:53 Download gff for BO10088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32756-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:20 Download gff for BO10088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32756-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:40:55 Download gff for BO10088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 75..897 12..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:30:27 Download gff for BO10088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 75..897 12..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:30:27 Download gff for BO10088.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5945756..5945919 12..175 98 -> Plus
X 5945981..5946166 176..361 100 -> Plus
X 5946233..5946371 362..500 100 -> Plus
X 5946459..5946693 501..735 100 -> Plus
X 5946755..5946853 736..834 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:40:55 Download gff for BO10088.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5839789..5839952 12..175 98 -> Plus
arm_X 5840014..5840199 176..361 100 -> Plus
arm_X 5840266..5840404 362..500 100 -> Plus
arm_X 5840492..5840726 501..735 100 -> Plus
arm_X 5840788..5840886 736..834 100   Plus

BO10088.complete Sequence

1411 bp (1411 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631644

> BO10088.complete
GAAGTTATCAGTCGACATGCTATTGAAAGTAGTGAATATAAATGGCTTGC
AGCACCTGTTCGCCTGCACTGAGGGGCAGCATGATGAAACCCTAACTATT
CACGTTTTCCGTCCTCGCGAGAAGTGGACTTACTCCGAGACTTTGATGAA
ACGCGATTACCAGCAGCGTTTGAAAACGCTCAACGCGCGTGTGAAGTTTC
CCGAGGAATTGGTGCGCCAGGTCCTGCTCAACAAGGATCCATTGCATGTC
GAACAGGATTACCAGCACCCATTGAACGTCCTGAAACTGAAGTATGCCAT
GGCGAATTTCAAAGTTTTCCTCAAGTGGGAATGGCACCTGAGACCCATGG
ATGCCGCACAGTTGTATAGCCAAATGTTCTTGAACACAATGTCCACGGCT
TTGGGACTACGGGCTCAGATACCCCTTCTGCTAGGGATTATCCATGCCAA
GGACAAGGAGCTGAACCAGTATCGCACCGAGGGATGCCAGCTGCGCAGAG
TGACCGTGGAAACCCAGCCCTTTGATCTCGAGGCTTTTATGAATGAGCAC
AAGCAATTGCTGGACTGTTCCGCTGCCTACCAGAAGGCGCAGAGTACTTT
TTTTGCTGATAAGCCATCGCCTAATTGGACATCGCTTTCTTCGCCATGGG
CACGGGATGTCGCGCCCTATTCTTCGTCAAACGGCTACTTTGCTTCTTCG
AAGGCATCAAGCCCAAAAGAAGCTCCTCGCATTAGGAAGCGCAAGGCTCT
TGAAATCAATACCAATCATATGGAGCGCAAGGTAATGCAGCGCCGCTCCA
ATCCGCTTGTCGAGTACAAAAGCTCGCAGAGTTCCCAAGAGACAAACGTA
AATGTAATCTTAAAAGTAGAGCTAGCGCCAATGGACACCAAGAATGATCT
CACTGATGATGACGAAGAGTCATCCACATCTTCGGGGCTTTCCCAAGGAT
GGTCTGGCCGACAACTAACCAAATTTAATCCAACCGTCGGAAATGGTGTA
TATGAACTTGCATCTCAGGAACAGTATGCTTCTTCTGAAGATGAGGATGC
TTCTTCTAAAGATGCGTATACTTCTTCTAAATATGAGGATGCTTCTTCTA
AAGATGAGGATGCTTCTTCTAAAGATGATGATGCCTCTAAATATGAGGAT
GCTTCTTTTAATGATGAGAATTCTTCTTCTGATGATGAGGAGGTCACTAG
GGAGGCATCGAACGCTTTGGATTCTATTAATGATTTTTACGATTACCCCC
CGGCATTCACTCAAGAACCCGAAGTCGGAATATCCGAGGGGAATTTGGAT
GTAATTCATCAAATTGAGCTGGAAGAGATCAAAGCCGCACTGATTTACTC
AACTGGTCGCGTCGCAGAAGCGATCAATAATCTAGAGAAAAAAGCAAGCT
TTCTAGACCAT

BO10088.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG32756-RB 1380 CG32756-PB 1..1377 17..1393 6885 100 Plus
CG32756-RA 1380 CG32756-PA 1..1377 17..1393 6885 100 Plus
CG12728-RB 1434 CG12728-PB 1..1175 17..1191 5325 97.2 Plus
CG32756-RB 1380 CG32756-PB 1010..1112 1089..1188 270 86.4 Plus
CG32756-RB 1380 CG32756-PB 1073..1172 1026..1128 270 86.4 Plus
CG32756-RA 1380 CG32756-PA 1010..1112 1089..1188 270 86.4 Plus
CG32756-RA 1380 CG32756-PA 1073..1172 1026..1128 270 86.4 Plus
CG32756-RB 1380 CG32756-PB 1008..1112 1066..1167 265 85.7 Plus
CG32756-RB 1380 CG32756-PB 1050..1151 1024..1128 265 85.7 Plus
CG32756-RA 1380 CG32756-PA 1008..1112 1066..1167 265 85.7 Plus
CG32756-RA 1380 CG32756-PA 1050..1151 1024..1128 265 85.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG32756-RB 2397 CG32756-RB 80..1456 17..1393 6885 100 Plus
CG32756-RA 1895 CG32756-RA 80..1456 17..1393 6885 100 Plus
CG12728-RB 2374 CG12728-RB 78..1252 17..1191 5325 97.2 Plus
CG32756-RB 2397 CG32756-RB 1087..1191 1066..1167 265 85.7 Plus
CG32756-RB 2397 CG32756-RB 1129..1230 1024..1128 265 85.7 Plus
CG32756-RA 1895 CG32756-RA 1087..1191 1066..1167 265 85.7 Plus
CG32756-RA 1895 CG32756-RA 1129..1230 1024..1128 265 85.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5946753..5947412 734..1393 3300 100 Plus
X 23542271 X 5943671..5944128 734..1191 1815 93.9 Plus
X 23542271 X 5946457..5946694 499..736 1190 100 Plus
X 23542271 X 5943375..5943612 499..736 1145 98.7 Plus
X 23542271 X 5942903..5943088 176..361 930 100 Plus
X 23542271 X 5945981..5946166 176..361 930 100 Plus
X 23542271 X 5945761..5945919 17..175 795 100 Plus
X 23542271 X 5942683..5942841 17..175 795 100 Plus
X 23542271 X 5946231..5946371 360..500 705 100 Plus
X 23542271 X 5943153..5943290 360..497 675 99.3 Plus
X 23542271 X 5944023..5944135 1026..1138 415 91.2 Plus
X 23542271 X 5944005..5944354 1029..1375 390 75 Plus
X 23542271 X 5943958..5944086 1066..1191 325 85.3 Plus
X 23542271 X 5944044..5944146 1026..1128 320 87.4 Plus
X 23542271 X 5944068..5944146 1029..1107 275 89.9 Plus
X 23542271 X 5947043..5947147 1066..1167 265 85.7 Plus
X 23542271 X 5947085..5947186 1024..1128 265 85.7 Plus
X 23542271 X 5944086..5944146 1026..1086 185 86.9 Plus
Blast to na_te.dros performed on 2014-11-27 14:34:17 has no hits.

BO10088.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:51 Download gff for BO10088.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 1..1380 17..1397 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:42 Download gff for BO10088.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 47..1434 12..1402 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:43 Download gff for BO10088.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 80..1450 17..1387 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:51 Download gff for BO10088.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 47..1434 12..1402 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:27 Download gff for BO10088.complete
Subject Subject Range Query Range Percent Splice Strand
CG32756-RA 80..1450 17..1387 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:27 Download gff for BO10088.complete
Subject Subject Range Query Range Percent Splice Strand
X 5945761..5945919 17..175 100 -> Plus
X 5945981..5946166 176..361 100 -> Plus
X 5946233..5946371 362..500 100 -> Plus
X 5946459..5946693 501..735 100 -> Plus
X 5946755..5947406 736..1387 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:43 Download gff for BO10088.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5839794..5839952 17..175 100 -> Plus
arm_X 5840014..5840199 176..361 100 -> Plus
arm_X 5840266..5840404 362..500 100 -> Plus
arm_X 5840492..5840726 501..735 100 -> Plus
arm_X 5840788..5841439 736..1387 100   Plus

BO10088.pep Sequence

Translation from 16 to 1411

> BO10088.pep
MLLKVVNINGLQHLFACTEGQHDETLTIHVFRPREKWTYSETLMKRDYQQ
RLKTLNARVKFPEELVRQVLLNKDPLHVEQDYQHPLNVLKLKYAMANFKV
FLKWEWHLRPMDAAQLYSQMFLNTMSTALGLRAQIPLLLGIIHAKDKELN
QYRTEGCQLRRVTVETQPFDLEAFMNEHKQLLDCSAAYQKAQSTFFADKP
SPNWTSLSSPWARDVAPYSSSNGYFASSKASSPKEAPRIRKRKALEINTN
HMERKVMQRRSNPLVEYKSSQSSQETNVNVILKVELAPMDTKNDLTDDDE
ESSTSSGLSQGWSGRQLTKFNPTVGNGVYELASQEQYASSEDEDASSKDA
YTSSKYEDASSKDEDASSKDDDASKYEDASFNDENSSSDDEEVTREASNA
LDSINDFYDYPPAFTQEPEVGISEGNLDVIHQIELEEIKAALIYSTGRVA
EAINNLEKKASFLDH

BO10088.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG32756-PB 459 CG32756-PB 1..459 1..459 2370 100 Plus
CG32756-PA 459 CG32756-PA 1..459 1..459 2370 100 Plus
CG12728-PB 477 CG12728-PB 1..473 1..459 2037 85.7 Plus
CG12728-PA 477 CG12728-PA 1..473 1..459 2037 85.7 Plus