Clone Sequence Records
BO10092.3prime Sequence
892 bp (864 high quality bases) assembled on 2006-04-19
> BO10092.3prime
ATGGTCTAGAAAGCTTGCCGATAGTATGGCCACGCTGCGTCGCGGCCCGC
CCTGACTGATGTTGTCCATGGAGGACCACTTCTTGATCCCATTCTTCAGT
GCCTCGGCAGTGACCTTGTCCTGCATCACACGCGACATGGCCTCCAGCTT
CTGGGCCCGCTCCTTGGACAGCGGCTCCGTGGGGAAGTTGAGCTCGTTGG
CCTCGGCGAGCGTGCGCAGGTCGAAGTAGTATTTGGCGTACACCGAGGAC
GGTACATTGATGTTGAACTGCAGCAGCTCGAGGAACTGGCGCTCCAGCTC
GTTCATGTCCTCCACGGTGATGTCTTTGAGTATTTGGCAGTAATCTACAT
TCCAAACGGCCTGGTCATCCCACACCTTTGAGGCGAGGAGAATGGCACCC
AACACCATGCGCTTCCAGTTGCAGGGTCCCACATCCAGCTCGGCGTAGGT
GAGTAGCCGCTCCAGGTAGACTAGCGTGATGATCGCACACTCGGCCGTCA
GCTGGGCGGCGTTAAAGAGCGTGCGCACGAACTTGTAGATCTGCCGGTGT
TCCGGATTGTGCGTGTCATAGTTATCCGGCACCTGGTCGTGGGTCAGCGG
ATGAAGCTTCTCGTCGAAGATGTCCAGCCGGCGATCCGATTGCCGATTCT
TGATGTGATAGTAAATGGCCAGTGAGACGCATTTGACCGTATTCTTAAGA
TTCGGCTGCGACACAGTGCTGTCGTCCAGATAGATCGTCGAGCAGGAGGA
GCTCTTCTTCATGCCGCCACCACCGCCGCAACTATTGCCACCGGGAGTAC
TGCCGCCGCCACCGCCGCCGCCTCCTCCGCCGCCGCTGCCCGCCTGCTGG
GCAATCTGCTGTTGCGAACGCTTGCGCGTCATGCCGCCGTTC
BO10092.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14939-PA | 1221 | CG14939-RA | 345..1218 | 892..19 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycY-RB | 2553 | CG14939-RB | 652..1525 | 892..19 | 4370 | 100 | Minus |
CycY-RA | 2148 | CG14939-RA | 652..1525 | 892..19 | 4370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11811591..11812087 | 396..892 | 2485 | 100 | Plus |
2L | 23513712 | 2L | 11811120..11811500 | 19..399 | 1905 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
diver2 | 4917 | diver2 DIVER2 4917bp | 1701..1750 | 74..124 | 108 | 70.6 | Plus |
BO10092.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:58 Download gff for
BO10092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14939-PA | 345..1221 | 16..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:27 Download gff for
BO10092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14939-PA | 345..1221 | 16..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:45:15 Download gff for
BO10092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycY-RA | 652..1525 | 19..892 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:04:44 Download gff for
BO10092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycY-RA | 652..1525 | 19..892 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:04:44 Download gff for
BO10092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11811120..11811499 | 19..398 | 100 | <- | Plus |
2L | 11811594..11812087 | 399..892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:45:15 Download gff for
BO10092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11811120..11811499 | 19..398 | 100 | <- | Plus |
arm_2L | 11811594..11812087 | 399..892 | 100 | | Plus |
BO10092.5prime Sequence
894 bp (824 high quality bases) assembled on 2006-04-19
> BO10092.5prime
GAAGTTATCAGTCGACATGGGCAACAAGAACTCGTGCTGCGCGTACTCCA
GTCCGCAGTCGGACCGCAAGTCTAAGGACATGCCGCCCGTCTTCGAGGAG
CGGATTATCCAGCTGGGTCATCCGCCGCACACGTCACAGCACCAGTTGGA
CGGCCACCATGGATCCGCGTCGGCGGTGCACCTGCATCACCATCATCACG
GCCACAATCAGCAACAGAATCAGCAGGGTGGCGGCGGTGACAACTATGAG
AACCAGCAGAATCTGCAGCACATCTCCGAGCGAGAGGCGCTGGAGGGCGA
GGAGGATCCGTCGGTCGATCCCACTGCAGCCACCATGTTCCTGGAACGAT
CAAAGGTGGAGAACGGCGGCATGACGCGCAAGCGTTCGCAACAGCAGATT
GCCCAGCAGGCGGGCAGCGGCGGCGGAGGAGGCGGCGGCGGTGGCGGCGG
CAGTACTCCCGGTGGCAATAGTTGCGGCGGTGGTGGCGGCATGAAGAAGA
GCTCCTCCTGCTCGACGATCTATCTGGACGACAGCACTGTGTCGCAGCCG
AATCTTAAGAATACGGTCAAATGCGTCTCACTGGCCATTTACTATCACAT
CAAGAATCGGCAATCGGATCGCCGGCTGGACATCTTCGACGAGAAGCTTC
ATCCGCTGACCCACGACCAGGTGCCGGATAACTATGACACGCACAATCCG
GAACACCGGCAGATCTACAAGTTCGTGCGCACGCTCTTTAACGCCGCCCA
GCTGACGGCCGAGTGTGCGATCATCACGCTAGTCTACCTGGAGCGGCTAC
TCACCTACGCCGAGCTGGATGTGGGACCCTGCAACTGGAAGCGCATGGTG
TTGGGTGCCATTCTCCTCGCCTCAAAGGTGTGGGATGACCAGGG
BO10092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14939-PA | 1221 | CG14939-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycY-RB | 2553 | CG14939-RB | 308..1184 | 17..893 | 4385 | 100 | Plus |
CycY-RA | 2148 | CG14939-RA | 308..1184 | 17..893 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11811591..11812431 | 857..17 | 4205 | 100 | Minus |
2L | 23513712 | 2L | 11811461..11811500 | 893..854 | 200 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 12:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6898 | 119..226 | 116 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2392 | 179..225 | 109 | 70.2 | Plus |
rover | 7318 | rover ROVER 7318bp | 6872..6918 | 177..223 | 109 | 70.2 | Plus |
BO10092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:59 Download gff for
BO10092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14939-PA | 1..877 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:28 Download gff for
BO10092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14939-PA | 1..877 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:59:12 Download gff for
BO10092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycY-RA | 308..1184 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:40:23 Download gff for
BO10092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycY-RA | 308..1184 | 17..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:40:23 Download gff for
BO10092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11811460..11811499 | 855..894 | 97 | <- | Minus |
2L | 11811594..11812431 | 17..854 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:59:12 Download gff for
BO10092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11811460..11811499 | 855..894 | 97 | <- | Minus |
arm_2L | 11811594..11812431 | 17..854 | 100 | | Minus |
BO10092.complete Sequence
1252 bp assembled on 2007-10-17
GenBank Submission: FJ631645
> BO10092.complete
GAAGTTATCAGTCGACATGGGCAACAAGAACTCGTGCTGCGCGTACTCCA
GTCCGCAGTCGGACCGCAAGTCTAAGGACATGCCGCCCGTCTTCGAGGAG
CGGATTATCCAGCTGGGTCATCCGCCGCACACGTCACAGCACCAGTTGGA
CGGCCACCATGGATCCGCGTCGGCGGTGCACCTGCATCACCATCATCACG
GCCACAATCAGCAACAGAATCAGCAGGGTGGCGGCGGTGACAACTATGAG
AACCAGCAGAATCTGCAGCACATCTCCGAGCGAGAGGCGCTGGAGGGCGA
GGAGGATCCGTCGGTCGATCCCACTGCAGCCACCATGTTCCTGGAACGAT
CAAAGGTGGAGAACGGCGGCATGACGCGCAAGCGTTCGCAACAGCAGATT
GCCCAGCAGGCGGGCAGCGGCGGCGGAGGAGGCGGCGGCGGTGGCGGCGG
CAGTACTCCCGGTGGCAATAGTTGCGGCGGTGGTGGCGGCATGAAGAAGA
GCTCCTCCTGCTCGACGATCTATCTGGACGACAGCACTGTGTCGCAGCCG
AATCTTAAGAATACGGTCAAATGCGTCTCACTGGCCATTTACTATCACAT
CAAGAATCGGCAATCGGATCGCCGGCTGGACATCTTCGACGAGAAGCTTC
ATCCGCTGACCCACGACCAGGTGCCGGATAACTATGACACGCACAATCCG
GAACACCGGCAGATCTACAAGTTCGTGCGCACGCTCTTTAACGCCGCCCA
GCTGACGGCCGAGTGTGCGATCATCACGCTAGTCTACCTGGAGCGGCTAC
TCACCTACGCCGAGCTGGATGTGGGACCCTGCAACTGGAAGCGCATGGTG
TTGGGTGCCATTCTCCTCGCCTCAAAGGTGTGGGATGACCAGGCCGTTTG
GAATGTAGATTACTGCCAAATACTCAAAGACATCACCGTGGAGGACATGA
ACGAGCTGGAGCGCCAGTTCCTCGAGCTGCTGCAGTTCAACATCAATGTA
CCGTCCTCGGTGTACGCCAAATACTACTTCGACCTGCGCACGCTCGCCGA
GGCCAACGAGCTCAACTTCCCCACGGAGCCGCTGTCCAAGGAGCGGGCCC
AGAAGCTGGAGGCCATGTCGCGTGTGATGCAGGACAAGGTCACTGCCGAG
GCACTGAAGAATGGGATCAAGAAGTGGTCCTCCATGGACAACATCAGTCA
GGGCGGGCCGCGACGCAGCGTGGCCATACTATCGGCAAGCTTTCTAGACC
AT
BO10092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycY-RB | 1221 | CG14939-PB | 1..1218 | 17..1234 | 6090 | 100 | Plus |
CycY-RA | 1221 | CG14939-PA | 1..1218 | 17..1234 | 6090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycY-RB | 2553 | CG14939-RB | 308..1525 | 17..1234 | 6090 | 100 | Plus |
CycY-RA | 2148 | CG14939-RA | 308..1525 | 17..1234 | 6090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11811591..11812431 | 857..17 | 4205 | 100 | Minus |
2L | 23513712 | 2L | 11811120..11811500 | 1234..854 | 1905 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:01:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6898 | 119..226 | 116 | 60 | Plus |
BO10092.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:59 Download gff for
BO10092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14939-RA | 1..1221 | 17..1237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:22 Download gff for
BO10092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14939-RA | 328..1545 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:51 Download gff for
BO10092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycY-RA | 308..1525 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:49 Download gff for
BO10092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14939-RA | 328..1545 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:13 Download gff for
BO10092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycY-RA | 308..1525 | 17..1236 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:13 Download gff for
BO10092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11811117..11811499 | 855..1236 | 99 | <- | Minus |
2L | 11811594..11812431 | 17..854 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:51 Download gff for
BO10092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11811117..11811499 | 855..1236 | 99 | <- | Minus |
arm_2L | 11811594..11812431 | 17..854 | 100 | | Minus |
BO10092.pep Sequence
Translation from 16 to 1252
> BO10092.pep
MGNKNSCCAYSSPQSDRKSKDMPPVFEERIIQLGHPPHTSQHQLDGHHGS
ASAVHLHHHHHGHNQQQNQQGGGGDNYENQQNLQHISEREALEGEEDPSV
DPTAATMFLERSKVENGGMTRKRSQQQIAQQAGSGGGGGGGGGGGSTPGG
NSCGGGGGMKKSSSCSTIYLDDSTVSQPNLKNTVKCVSLAIYYHIKNRQS
DRRLDIFDEKLHPLTHDQVPDNYDTHNPEHRQIYKFVRTLFNAAQLTAEC
AIITLVYLERLLTYAELDVGPCNWKRMVLGAILLASKVWDDQAVWNVDYC
QILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRTLAEANELN
FPTEPLSKERAQKLEAMSRVMQDKVTAEALKNGIKKWSSMDNISQGGPRR
SVAILSASFLDH
BO10092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycY-PB | 406 | CG14939-PB | 1..406 | 1..406 | 2161 | 100 | Plus |
CycY-PA | 406 | CG14939-PA | 1..406 | 1..406 | 2161 | 100 | Plus |