Clone BO10092 Report

Search the DGRC for BO10092

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:100
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCycY-RA
Protein status:BO10092.pep: validated full length
Sequenced Size:1252

Clone Sequence Records

BO10092.3prime Sequence

892 bp (864 high quality bases) assembled on 2006-04-19

> BO10092.3prime
ATGGTCTAGAAAGCTTGCCGATAGTATGGCCACGCTGCGTCGCGGCCCGC
CCTGACTGATGTTGTCCATGGAGGACCACTTCTTGATCCCATTCTTCAGT
GCCTCGGCAGTGACCTTGTCCTGCATCACACGCGACATGGCCTCCAGCTT
CTGGGCCCGCTCCTTGGACAGCGGCTCCGTGGGGAAGTTGAGCTCGTTGG
CCTCGGCGAGCGTGCGCAGGTCGAAGTAGTATTTGGCGTACACCGAGGAC
GGTACATTGATGTTGAACTGCAGCAGCTCGAGGAACTGGCGCTCCAGCTC
GTTCATGTCCTCCACGGTGATGTCTTTGAGTATTTGGCAGTAATCTACAT
TCCAAACGGCCTGGTCATCCCACACCTTTGAGGCGAGGAGAATGGCACCC
AACACCATGCGCTTCCAGTTGCAGGGTCCCACATCCAGCTCGGCGTAGGT
GAGTAGCCGCTCCAGGTAGACTAGCGTGATGATCGCACACTCGGCCGTCA
GCTGGGCGGCGTTAAAGAGCGTGCGCACGAACTTGTAGATCTGCCGGTGT
TCCGGATTGTGCGTGTCATAGTTATCCGGCACCTGGTCGTGGGTCAGCGG
ATGAAGCTTCTCGTCGAAGATGTCCAGCCGGCGATCCGATTGCCGATTCT
TGATGTGATAGTAAATGGCCAGTGAGACGCATTTGACCGTATTCTTAAGA
TTCGGCTGCGACACAGTGCTGTCGTCCAGATAGATCGTCGAGCAGGAGGA
GCTCTTCTTCATGCCGCCACCACCGCCGCAACTATTGCCACCGGGAGTAC
TGCCGCCGCCACCGCCGCCGCCTCCTCCGCCGCCGCTGCCCGCCTGCTGG
GCAATCTGCTGTTGCGAACGCTTGCGCGTCATGCCGCCGTTC

BO10092.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14939-PA 1221 CG14939-RA 345..1218 892..19 4370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
CycY-RB 2553 CG14939-RB 652..1525 892..19 4370 100 Minus
CycY-RA 2148 CG14939-RA 652..1525 892..19 4370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11811591..11812087 396..892 2485 100 Plus
2L 23513712 2L 11811120..11811500 19..399 1905 100 Plus
Blast to na_te.dros performed 2015-02-10 23:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 1701..1750 74..124 108 70.6 Plus

BO10092.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:58 Download gff for BO10092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14939-PA 345..1221 16..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:27 Download gff for BO10092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14939-PA 345..1221 16..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:45:15 Download gff for BO10092.3prime
Subject Subject Range Query Range Percent Splice Strand
CycY-RA 652..1525 19..892 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:04:44 Download gff for BO10092.3prime
Subject Subject Range Query Range Percent Splice Strand
CycY-RA 652..1525 19..892 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:04:44 Download gff for BO10092.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11811120..11811499 19..398 100 <- Plus
2L 11811594..11812087 399..892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:45:15 Download gff for BO10092.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11811120..11811499 19..398 100 <- Plus
arm_2L 11811594..11812087 399..892 100   Plus

BO10092.5prime Sequence

894 bp (824 high quality bases) assembled on 2006-04-19

> BO10092.5prime
GAAGTTATCAGTCGACATGGGCAACAAGAACTCGTGCTGCGCGTACTCCA
GTCCGCAGTCGGACCGCAAGTCTAAGGACATGCCGCCCGTCTTCGAGGAG
CGGATTATCCAGCTGGGTCATCCGCCGCACACGTCACAGCACCAGTTGGA
CGGCCACCATGGATCCGCGTCGGCGGTGCACCTGCATCACCATCATCACG
GCCACAATCAGCAACAGAATCAGCAGGGTGGCGGCGGTGACAACTATGAG
AACCAGCAGAATCTGCAGCACATCTCCGAGCGAGAGGCGCTGGAGGGCGA
GGAGGATCCGTCGGTCGATCCCACTGCAGCCACCATGTTCCTGGAACGAT
CAAAGGTGGAGAACGGCGGCATGACGCGCAAGCGTTCGCAACAGCAGATT
GCCCAGCAGGCGGGCAGCGGCGGCGGAGGAGGCGGCGGCGGTGGCGGCGG
CAGTACTCCCGGTGGCAATAGTTGCGGCGGTGGTGGCGGCATGAAGAAGA
GCTCCTCCTGCTCGACGATCTATCTGGACGACAGCACTGTGTCGCAGCCG
AATCTTAAGAATACGGTCAAATGCGTCTCACTGGCCATTTACTATCACAT
CAAGAATCGGCAATCGGATCGCCGGCTGGACATCTTCGACGAGAAGCTTC
ATCCGCTGACCCACGACCAGGTGCCGGATAACTATGACACGCACAATCCG
GAACACCGGCAGATCTACAAGTTCGTGCGCACGCTCTTTAACGCCGCCCA
GCTGACGGCCGAGTGTGCGATCATCACGCTAGTCTACCTGGAGCGGCTAC
TCACCTACGCCGAGCTGGATGTGGGACCCTGCAACTGGAAGCGCATGGTG
TTGGGTGCCATTCTCCTCGCCTCAAAGGTGTGGGATGACCAGGG

BO10092.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14939-PA 1221 CG14939-RA 1..877 17..893 4385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
CycY-RB 2553 CG14939-RB 308..1184 17..893 4385 100 Plus
CycY-RA 2148 CG14939-RA 308..1184 17..893 4385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11811591..11812431 857..17 4205 100 Minus
2L 23513712 2L 11811461..11811500 893..854 200 100 Minus
Blast to na_te.dros performed 2015-02-02 12:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6898 119..226 116 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2392 179..225 109 70.2 Plus
rover 7318 rover ROVER 7318bp 6872..6918 177..223 109 70.2 Plus

BO10092.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:29:59 Download gff for BO10092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14939-PA 1..877 17..894 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:28 Download gff for BO10092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14939-PA 1..877 17..894 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:59:12 Download gff for BO10092.5prime
Subject Subject Range Query Range Percent Splice Strand
CycY-RA 308..1184 17..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:40:23 Download gff for BO10092.5prime
Subject Subject Range Query Range Percent Splice Strand
CycY-RA 308..1184 17..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:40:23 Download gff for BO10092.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11811460..11811499 855..894 97 <- Minus
2L 11811594..11812431 17..854 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:59:12 Download gff for BO10092.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11811460..11811499 855..894 97 <- Minus
arm_2L 11811594..11812431 17..854 100   Minus

BO10092.complete Sequence

1252 bp assembled on 2007-10-17

GenBank Submission: FJ631645

> BO10092.complete
GAAGTTATCAGTCGACATGGGCAACAAGAACTCGTGCTGCGCGTACTCCA
GTCCGCAGTCGGACCGCAAGTCTAAGGACATGCCGCCCGTCTTCGAGGAG
CGGATTATCCAGCTGGGTCATCCGCCGCACACGTCACAGCACCAGTTGGA
CGGCCACCATGGATCCGCGTCGGCGGTGCACCTGCATCACCATCATCACG
GCCACAATCAGCAACAGAATCAGCAGGGTGGCGGCGGTGACAACTATGAG
AACCAGCAGAATCTGCAGCACATCTCCGAGCGAGAGGCGCTGGAGGGCGA
GGAGGATCCGTCGGTCGATCCCACTGCAGCCACCATGTTCCTGGAACGAT
CAAAGGTGGAGAACGGCGGCATGACGCGCAAGCGTTCGCAACAGCAGATT
GCCCAGCAGGCGGGCAGCGGCGGCGGAGGAGGCGGCGGCGGTGGCGGCGG
CAGTACTCCCGGTGGCAATAGTTGCGGCGGTGGTGGCGGCATGAAGAAGA
GCTCCTCCTGCTCGACGATCTATCTGGACGACAGCACTGTGTCGCAGCCG
AATCTTAAGAATACGGTCAAATGCGTCTCACTGGCCATTTACTATCACAT
CAAGAATCGGCAATCGGATCGCCGGCTGGACATCTTCGACGAGAAGCTTC
ATCCGCTGACCCACGACCAGGTGCCGGATAACTATGACACGCACAATCCG
GAACACCGGCAGATCTACAAGTTCGTGCGCACGCTCTTTAACGCCGCCCA
GCTGACGGCCGAGTGTGCGATCATCACGCTAGTCTACCTGGAGCGGCTAC
TCACCTACGCCGAGCTGGATGTGGGACCCTGCAACTGGAAGCGCATGGTG
TTGGGTGCCATTCTCCTCGCCTCAAAGGTGTGGGATGACCAGGCCGTTTG
GAATGTAGATTACTGCCAAATACTCAAAGACATCACCGTGGAGGACATGA
ACGAGCTGGAGCGCCAGTTCCTCGAGCTGCTGCAGTTCAACATCAATGTA
CCGTCCTCGGTGTACGCCAAATACTACTTCGACCTGCGCACGCTCGCCGA
GGCCAACGAGCTCAACTTCCCCACGGAGCCGCTGTCCAAGGAGCGGGCCC
AGAAGCTGGAGGCCATGTCGCGTGTGATGCAGGACAAGGTCACTGCCGAG
GCACTGAAGAATGGGATCAAGAAGTGGTCCTCCATGGACAACATCAGTCA
GGGCGGGCCGCGACGCAGCGTGGCCATACTATCGGCAAGCTTTCTAGACC
AT

BO10092.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
CycY-RB 1221 CG14939-PB 1..1218 17..1234 6090 100 Plus
CycY-RA 1221 CG14939-PA 1..1218 17..1234 6090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
CycY-RB 2553 CG14939-RB 308..1525 17..1234 6090 100 Plus
CycY-RA 2148 CG14939-RA 308..1525 17..1234 6090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11811591..11812431 857..17 4205 100 Minus
2L 23513712 2L 11811120..11811500 1234..854 1905 100 Minus
Blast to na_te.dros performed 2014-11-28 01:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6898 119..226 116 60 Plus

BO10092.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:59 Download gff for BO10092.complete
Subject Subject Range Query Range Percent Splice Strand
CG14939-RA 1..1221 17..1237 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:22 Download gff for BO10092.complete
Subject Subject Range Query Range Percent Splice Strand
CG14939-RA 328..1545 17..1234 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:51 Download gff for BO10092.complete
Subject Subject Range Query Range Percent Splice Strand
CycY-RA 308..1525 17..1236 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:49 Download gff for BO10092.complete
Subject Subject Range Query Range Percent Splice Strand
CG14939-RA 328..1545 17..1236 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:13 Download gff for BO10092.complete
Subject Subject Range Query Range Percent Splice Strand
CycY-RA 308..1525 17..1236 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:13 Download gff for BO10092.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11811117..11811499 855..1236 99 <- Minus
2L 11811594..11812431 17..854 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:51 Download gff for BO10092.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11811117..11811499 855..1236 99 <- Minus
arm_2L 11811594..11812431 17..854 100   Minus

BO10092.pep Sequence

Translation from 16 to 1252

> BO10092.pep
MGNKNSCCAYSSPQSDRKSKDMPPVFEERIIQLGHPPHTSQHQLDGHHGS
ASAVHLHHHHHGHNQQQNQQGGGGDNYENQQNLQHISEREALEGEEDPSV
DPTAATMFLERSKVENGGMTRKRSQQQIAQQAGSGGGGGGGGGGGSTPGG
NSCGGGGGMKKSSSCSTIYLDDSTVSQPNLKNTVKCVSLAIYYHIKNRQS
DRRLDIFDEKLHPLTHDQVPDNYDTHNPEHRQIYKFVRTLFNAAQLTAEC
AIITLVYLERLLTYAELDVGPCNWKRMVLGAILLASKVWDDQAVWNVDYC
QILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRTLAEANELN
FPTEPLSKERAQKLEAMSRVMQDKVTAEALKNGIKKWSSMDNISQGGPRR
SVAILSASFLDH

BO10092.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
CycY-PB 406 CG14939-PB 1..406 1..406 2161 100 Plus
CycY-PA 406 CG14939-PA 1..406 1..406 2161 100 Plus